Wall clock time and date at job start Mon Mar 30 2020 07:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47334 * 2 1 4 4 H 1.09006 * 109.46682 * 304.99502 * 3 2 1 5 5 N 1.46896 * 109.47383 * 64.99250 * 3 2 1 6 6 C 1.53003 * 109.47241 * 184.99842 * 3 2 1 7 7 C 1.50694 * 109.47061 * 174.99750 * 6 3 2 8 8 C 1.34309 * 126.47735 * 265.02231 * 7 6 3 9 9 N 1.37003 * 109.93372 * 179.75682 * 8 7 6 10 10 C 1.37205 * 125.08661 * 180.26534 * 9 8 7 11 11 H 1.08007 * 119.99456 * 158.96441 * 10 9 8 12 12 C 1.38850 * 120.00263 * 338.96197 * 10 9 8 13 13 N 1.31439 * 120.00148 * 349.15991 * 12 10 9 14 14 Si 1.86807 * 119.99844 * 169.16290 * 12 10 9 15 15 H 1.48494 * 109.47333 * 59.99799 * 14 12 10 16 16 H 1.48498 * 109.46970 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46968 * 299.99837 * 14 12 10 18 18 C 1.38109 * 109.81740 * 0.24291 * 9 8 7 19 19 C 1.38956 * 133.42117 * 180.02562 * 18 9 8 20 20 C 1.37898 * 119.92397 * 179.97438 * 19 18 9 21 21 C 1.38747 * 120.64457 * 359.95720 * 20 19 18 22 22 C 1.37776 * 120.36873 * 0.03965 * 21 20 19 23 23 C 1.39519 * 119.65424 * 359.97438 * 22 21 20 24 24 H 1.08991 * 109.47357 * 300.00720 * 1 2 3 25 25 H 1.09002 * 109.46850 * 60.00499 * 1 2 3 26 26 H 1.08998 * 109.47385 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47047 * 239.99303 * 2 1 3 28 28 H 1.09002 * 109.46850 * 119.99500 * 2 1 3 29 29 H 1.00904 * 110.99771 * 60.00211 * 5 3 2 30 30 H 1.00897 * 111.00158 * 183.95635 * 5 3 2 31 31 H 1.09004 * 109.46764 * 54.99738 * 6 3 2 32 32 H 1.08996 * 109.46742 * 294.99722 * 6 3 2 33 33 H 1.08001 * 125.03025 * 0.02562 * 8 7 6 34 34 H 0.97000 * 119.99700 * 179.97438 * 13 12 10 35 35 H 1.07998 * 120.03844 * 359.95532 * 19 18 9 36 36 H 1.07999 * 119.67775 * 179.97438 * 20 19 18 37 37 H 1.08004 * 119.81629 * 180.02562 * 21 20 19 38 38 H 1.08003 * 120.17612 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 7 1.6513 2.0993 1.2551 6 6 3.5649 1.4443 -0.1257 7 6 4.0570 2.8632 -0.2493 8 6 4.3179 3.5213 -1.3906 9 7 4.7416 4.7936 -1.1098 10 6 5.0866 5.7347 -2.0467 11 1 5.0803 6.7830 -1.7867 12 6 5.4439 5.3395 -3.3289 13 7 5.6592 4.0693 -3.5891 14 14 5.6188 6.6133 -4.6842 15 1 6.6655 7.5968 -4.3071 16 1 6.0049 5.9395 -5.9499 17 1 4.3243 7.3160 -4.8730 18 6 4.7689 4.9869 0.2574 19 6 5.1120 6.0661 1.0627 20 6 5.0346 5.9525 2.4348 21 6 4.6155 4.7683 3.0239 22 6 4.2707 3.6862 2.2439 23 6 4.3441 3.7857 0.8542 24 1 -0.3633 0.5139 0.8898 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.0421 1.6180 2.0512 30 1 1.9203 3.0718 1.2527 31 1 3.8571 0.8799 -1.0113 32 1 4.0029 0.9836 0.7597 33 1 4.2057 3.1100 -2.3829 34 1 5.9084 3.7932 -4.4850 35 1 5.4391 6.9927 0.6145 36 1 5.3026 6.7937 3.0570 37 1 4.5595 4.6942 4.0999 38 1 3.9453 2.7658 2.7057 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091005236.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:12 Heat of formation + Delta-G solvation = 20.871733 kcal Electronic energy + Delta-G solvation = -19139.876928 eV Core-core repulsion = 16366.875985 eV Total energy + Delta-G solvation = -2773.000943 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.87092 -38.01450 -37.74014 -35.03119 -33.25973 -31.62248 -30.70601 -30.01102 -28.52774 -26.42748 -24.28636 -23.23600 -22.19627 -21.40936 -20.34320 -19.37454 -17.46448 -17.11757 -16.63908 -16.31650 -15.92331 -15.49179 -15.33685 -14.69998 -14.66430 -14.55161 -14.10439 -13.87750 -13.58345 -13.39470 -13.08364 -12.97404 -12.79282 -12.48659 -12.31674 -12.21965 -12.14335 -11.81626 -11.64006 -11.52519 -11.25306 -10.99947 -10.19787 -9.48316 -8.85202 -8.70752 -8.26339 -6.23796 0.51953 1.00624 1.32118 1.39345 1.45517 2.07441 2.19172 2.89361 3.06430 3.33440 3.87630 4.02688 4.14652 4.27303 4.35701 4.40224 4.50518 4.55391 4.67062 4.78798 4.82071 4.92978 4.99304 5.04759 5.12037 5.19585 5.22601 5.30348 5.38662 5.42371 5.44516 5.55391 5.58989 5.79621 5.87172 5.97150 6.34459 6.40949 6.48509 6.57565 6.76157 7.15274 7.55699 8.40597 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.007464 C = 0.005411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.957672 B = 3750.229132 C = 5173.754875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.103 3.897 4 H 0.049 0.951 5 N -0.834 5.834 6 C -0.052 4.052 7 C -0.243 4.243 8 C 0.056 3.944 9 N -0.313 5.313 10 C -0.374 4.374 11 H 0.101 0.899 12 C 0.000 4.000 13 N -0.883 5.883 14 Si 1.009 2.991 15 H -0.262 1.262 16 H -0.270 1.270 17 H -0.263 1.263 18 C 0.016 3.984 19 C -0.138 4.138 20 C -0.123 4.123 21 C -0.164 4.164 22 C -0.083 4.083 23 C -0.125 4.125 24 H 0.058 0.942 25 H 0.039 0.961 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.339 0.661 30 H 0.338 0.662 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.149 0.851 34 H 0.283 0.717 35 H 0.101 0.899 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.579 -3.805 6.684 8.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C -0.009 4.009 4 H 0.068 0.932 5 N -0.363 5.363 6 C -0.092 4.092 7 C -0.249 4.249 8 C -0.077 4.077 9 N 0.024 4.976 10 C -0.501 4.501 11 H 0.119 0.881 12 C -0.204 4.204 13 N -0.516 5.516 14 Si 0.829 3.171 15 H -0.186 1.186 16 H -0.194 1.194 17 H -0.187 1.187 18 C -0.094 4.094 19 C -0.158 4.158 20 C -0.143 4.143 21 C -0.183 4.183 22 C -0.102 4.102 23 C -0.131 4.131 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.151 0.849 30 H 0.151 0.849 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.167 0.833 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.159 0.841 37 H 0.163 0.837 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.178 -3.876 5.996 8.820 hybrid contribution 1.559 0.897 -1.110 2.113 sum -3.619 -2.980 4.886 6.771 Atomic orbital electron populations 1.21611 0.95070 1.01164 1.01702 1.21518 0.96779 0.94325 1.02148 1.21380 0.91408 0.95429 0.92663 0.93243 1.59073 1.66397 1.07127 1.03738 1.20505 0.96874 0.90496 1.01325 1.20160 1.16783 0.97511 0.90493 1.21870 1.01150 0.85603 0.99120 1.40306 1.44058 1.10320 1.02959 1.20075 1.48322 0.89759 0.91956 0.88101 1.26444 0.93611 0.99482 1.00885 1.69994 1.41234 1.17141 1.23219 0.84773 0.79470 0.77052 0.75804 1.18624 1.19403 1.18722 1.18999 1.08239 0.98068 0.84133 1.20133 1.05279 0.96375 0.94044 1.20897 1.01884 0.99112 0.92359 1.20999 1.04104 0.93107 1.00076 1.20537 1.00318 0.98990 0.90322 1.19145 1.07106 0.93119 0.93728 0.92270 0.94150 0.92109 0.91672 0.91187 0.84860 0.84926 0.92486 0.91568 0.83350 0.90726 0.88069 0.84117 0.83710 0.85345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.80 71.98 0.71 -2.47 16 2 C -0.11 -2.69 5.58 30.59 0.17 -2.52 16 3 C 0.10 3.20 2.79 44.92 0.13 3.33 16 4 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 5 N -0.83 -24.59 8.62 -168.68 -1.45 -26.04 16 6 C -0.05 -1.83 5.39 29.85 0.16 -1.67 16 7 C -0.24 -10.83 5.10 -18.56 -0.09 -10.92 16 8 C 0.06 2.95 9.81 82.99 0.81 3.76 16 9 N -0.31 -17.02 2.92 -342.89 -1.00 -18.02 16 10 C -0.37 -20.43 9.93 84.00 0.83 -19.59 16 11 H 0.10 5.30 7.85 -2.91 -0.02 5.28 16 12 C 0.00 0.02 5.35 84.90 0.45 0.48 16 13 N -0.88 -47.33 10.85 21.64 0.23 -47.10 16 14 Si 1.01 39.84 29.57 68.60 2.03 41.87 16 15 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 16 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 17 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 18 C 0.02 0.81 6.75 38.93 0.26 1.07 16 19 C -0.14 -5.99 9.95 22.36 0.22 -5.77 16 20 C -0.12 -4.30 10.02 22.31 0.22 -4.07 16 21 C -0.16 -5.28 10.03 22.28 0.22 -5.05 16 22 C -0.08 -2.96 9.25 22.47 0.21 -2.75 16 23 C -0.13 -5.52 5.44 -20.17 -0.11 -5.63 16 24 H 0.06 1.43 7.75 -2.39 -0.02 1.41 16 25 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.34 8.64 8.68 -89.69 -0.78 7.87 16 30 H 0.34 11.54 6.64 -89.70 -0.60 10.94 16 31 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.15 8.11 6.34 -2.91 -0.02 8.09 16 34 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 35 H 0.10 4.30 8.06 -2.91 -0.02 4.27 16 36 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 37 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 38 H 0.13 3.78 7.74 -2.91 -0.02 3.76 16 Total: -1.00 -59.74 312.94 3.70 -56.05 By element: Atomic # 1 Polarization: 45.38 SS G_CDS: -0.31 Total: 45.07 kcal Atomic # 6 Polarization: -56.02 SS G_CDS: 4.20 Total: -51.82 kcal Atomic # 7 Polarization: -88.94 SS G_CDS: -2.22 Total: -91.16 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -59.74 3.70 -56.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091005236.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.919 kcal (2) G-P(sol) polarization free energy of solvation -59.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds