Wall clock time and date at job start Mon Mar 30 2020 06:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47534 * 2 1 4 4 H 1.08999 * 109.47192 * 305.00427 * 3 2 1 5 5 C 1.50703 * 109.47545 * 184.99952 * 3 2 1 6 6 H 1.07999 * 120.00035 * 240.00154 * 5 3 2 7 7 C 1.37878 * 119.99749 * 59.99956 * 5 3 2 8 8 N 1.31515 * 120.00031 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00196 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47276 * 59.99855 * 9 7 5 11 11 H 1.48493 * 109.47247 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47111 * 300.00471 * 9 7 5 13 13 C 1.50708 * 109.47071 * 65.00288 * 3 2 1 14 14 O 1.21248 * 119.99869 * 94.99967 * 13 3 2 15 15 C 1.47167 * 119.99849 * 275.00273 * 13 3 2 16 16 C 1.39844 * 120.17124 * 179.97438 * 15 13 3 17 17 C 1.37886 * 119.82546 * 179.97438 * 16 15 13 18 18 C 1.38405 * 120.17263 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.82784 * 179.74779 * 18 17 16 20 20 C 1.52999 * 117.49857 * 188.62277 * 19 18 17 21 21 C 1.53005 * 117.49999 * 119.99619 * 19 18 17 22 22 C 1.38402 * 120.34865 * 0.02562 * 18 17 16 23 23 C 1.37886 * 120.17250 * 0.02562 * 22 18 17 24 24 H 1.08999 * 109.46625 * 299.99930 * 1 2 3 25 25 H 1.08997 * 109.46847 * 59.99704 * 1 2 3 26 26 H 1.08993 * 109.47113 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47275 * 239.99783 * 2 1 3 28 28 H 1.09005 * 109.47423 * 120.00447 * 2 1 3 29 29 H 0.96996 * 120.00164 * 180.02562 * 8 7 5 30 30 H 1.07999 * 120.09086 * 359.97438 * 16 15 13 31 31 H 1.07997 * 119.91876 * 180.02562 * 17 16 15 32 32 H 1.09005 * 115.55006 * 334.32981 * 19 18 17 33 33 H 1.08995 * 117.50257 * 359.97438 * 20 19 18 34 34 H 1.09002 * 117.49697 * 145.02648 * 20 19 18 35 35 H 1.08999 * 117.49924 * 214.98133 * 21 19 18 36 36 H 1.09000 * 117.49397 * 359.97438 * 21 19 18 37 37 H 1.08005 * 119.91752 * 179.97438 * 22 18 17 38 38 H 1.08005 * 120.08922 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8799 -1.3812 10 1 6.5968 0.1451 -0.2344 11 1 6.3978 0.2166 -2.6504 12 1 6.5006 2.2798 -1.3808 13 6 1.6415 2.1162 1.2878 14 8 2.4159 2.1482 2.2202 15 6 0.3123 2.7353 1.4136 16 6 -0.0615 3.3610 2.6071 17 6 -1.3085 3.9392 2.7169 18 6 -2.1890 3.9019 1.6498 19 6 -3.5521 4.5313 1.7803 20 6 -4.5542 4.2869 0.6503 21 6 -3.9036 5.6623 0.8117 22 6 -1.8265 3.2845 0.4653 23 6 -0.5836 2.7009 0.3401 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.8292 -0.0610 -2.9499 30 1 0.6246 3.3913 3.4406 31 1 -1.5986 4.4232 3.6378 32 1 -3.9439 4.5979 2.7953 33 1 -4.2276 3.6712 -0.1877 34 1 -5.6056 4.1926 0.9218 35 1 -4.5271 6.4728 1.1893 36 1 -3.1488 5.9514 0.0804 37 1 -2.5193 3.2591 -0.3629 38 1 -0.3019 2.2198 -0.5850 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094522692.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:20 Heat of formation + Delta-G solvation = 3.319625 kcal Electronic energy + Delta-G solvation = -18844.396648 eV Core-core repulsion = 16038.341837 eV Total energy + Delta-G solvation = -2806.054810 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.136 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.84911 -38.30571 -36.32206 -34.48945 -31.97973 -30.55106 -30.32912 -27.80705 -24.97110 -23.28894 -22.83863 -22.21054 -21.31430 -20.19947 -18.55202 -17.01596 -16.16244 -15.83171 -15.01604 -14.87523 -14.42045 -14.26153 -13.99227 -13.47441 -13.20871 -12.77188 -12.61611 -12.40821 -12.22198 -11.73467 -11.68110 -11.29594 -11.23825 -10.95083 -10.82761 -10.68720 -10.67674 -10.43542 -10.16615 -9.90977 -9.74017 -8.96609 -8.68913 -8.50670 -8.31809 -8.20376 -6.03908 -4.08772 1.09685 1.65546 3.10981 3.34614 3.37524 3.42912 3.76551 4.26586 4.42558 4.46462 4.72577 4.85069 4.95386 5.03538 5.18301 5.24727 5.27723 5.46714 5.61908 5.67257 5.73643 5.94011 5.96621 6.04845 6.13816 6.18947 6.25930 6.31929 6.46936 6.67891 6.72476 6.80952 6.88147 6.95007 7.14911 7.17032 7.55670 7.78134 8.00126 8.25965 8.67557 8.96136 9.55739 11.02377 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.032824 B = 0.004884 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.821193 B = 5732.131219 C = 5992.262726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.109 4.109 3 C 0.012 3.988 4 H 0.052 0.948 5 C -0.507 4.507 6 H 0.066 0.934 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.397 3.603 14 O -0.464 6.464 15 C -0.158 4.158 16 C -0.070 4.070 17 C -0.134 4.134 18 C -0.037 4.037 19 C -0.118 4.118 20 C -0.177 4.177 21 C -0.170 4.170 22 C -0.142 4.142 23 C -0.063 4.063 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.037 0.963 27 H 0.105 0.895 28 H 0.037 0.963 29 H 0.262 0.738 30 H 0.129 0.871 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.124 0.876 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.876 6.341 4.165 16.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.147 4.147 3 C -0.007 4.007 4 H 0.070 0.930 5 C -0.545 4.545 6 H 0.085 0.915 7 C -0.139 4.139 8 N -0.532 5.532 9 Si 0.725 3.275 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.276 3.724 14 O -0.340 6.340 15 C -0.159 4.159 16 C -0.088 4.088 17 C -0.152 4.152 18 C -0.037 4.037 19 C -0.136 4.136 20 C -0.214 4.214 21 C -0.207 4.207 22 C -0.159 4.159 23 C -0.081 4.081 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.123 0.877 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.147 0.853 31 H 0.139 0.861 32 H 0.129 0.871 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.141 0.859 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.441 6.264 4.478 16.366 hybrid contribution 0.844 -0.016 -0.137 0.855 sum -13.597 6.248 4.341 15.581 Atomic orbital electron populations 1.22272 0.99102 0.99981 1.00307 1.21493 0.91654 0.98131 1.03451 1.19159 0.97767 0.93377 0.90387 0.93035 1.21073 0.90106 1.37847 1.05515 0.91540 1.24923 0.98437 0.95049 0.95490 1.69839 1.35043 1.38729 1.09545 0.86558 0.85352 0.78358 0.77214 1.20147 1.21278 1.20215 1.23385 0.83444 0.74899 0.90708 1.90347 1.52307 1.50010 1.41310 1.21122 0.97950 1.02007 0.94837 1.21425 0.95657 0.94415 0.97281 1.20803 0.93961 1.01876 0.98569 1.19263 0.93605 0.96844 0.94015 1.21062 0.93423 1.02883 0.96253 1.23078 0.97897 0.99681 1.00742 1.23027 1.03457 0.91867 1.02334 1.20981 0.97105 1.00290 0.97567 1.21898 0.92373 0.94764 0.99042 0.93745 0.93035 0.94352 0.87669 0.94399 0.92826 0.85315 0.86142 0.87082 0.88106 0.88573 0.88608 0.88418 0.85854 0.83736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 8.24 37.16 0.31 -2.68 16 2 C -0.11 -2.53 5.23 -26.73 -0.14 -2.67 16 3 C 0.01 0.29 1.76 -92.92 -0.16 0.13 16 4 H 0.05 1.29 6.74 -51.93 -0.35 0.94 16 5 C -0.51 -14.26 8.33 -34.44 -0.29 -14.55 16 6 H 0.07 1.95 7.03 -52.49 -0.37 1.58 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.71 11.29 55.43 0.63 -24.08 16 9 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.40 9.17 5.88 -30.68 -0.18 8.99 16 14 O -0.46 -11.83 15.80 5.58 0.09 -11.74 16 15 C -0.16 -3.00 4.91 -105.07 -0.52 -3.51 16 16 C -0.07 -1.17 9.60 -39.11 -0.38 -1.54 16 17 C -0.13 -1.86 9.71 -39.65 -0.39 -2.25 16 18 C -0.04 -0.49 5.62 -104.50 -0.59 -1.07 16 19 C -0.12 -1.21 6.04 -91.77 -0.55 -1.76 16 20 C -0.18 -1.56 9.85 -26.73 -0.26 -1.82 16 21 C -0.17 -1.52 10.17 -26.72 -0.27 -1.79 16 22 C -0.14 -1.97 9.28 -39.65 -0.37 -2.34 16 23 C -0.06 -1.05 7.06 -39.10 -0.28 -1.32 16 24 H 0.04 0.80 5.31 -51.93 -0.28 0.53 16 25 H 0.05 0.90 6.47 -51.93 -0.34 0.57 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.11 2.68 5.95 -51.93 -0.31 2.37 16 28 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.13 2.14 7.65 -52.49 -0.40 1.73 16 31 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 32 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.10 0.90 6.16 -51.93 -0.32 0.58 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.12 1.44 5.99 -52.48 -0.31 1.12 16 38 H 0.15 2.45 4.25 -52.48 -0.22 2.23 16 LS Contribution 305.71 15.07 4.61 4.61 Total: -1.00 -29.66 305.71 -8.85 -38.51 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -4.99 Total: 2.72 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: -4.16 Total: -26.59 kcal Atomic # 7 Polarization: -24.71 SS G_CDS: 0.63 Total: -24.08 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.66 -8.85 -38.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094522692.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.833 kcal (2) G-P(sol) polarization free energy of solvation -29.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds