Wall clock time and date at job start Mon Mar 30 2020 06:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47534 * 2 1 4 4 H 1.08999 * 109.47192 * 305.00427 * 3 2 1 5 5 C 1.50703 * 109.47545 * 184.99952 * 3 2 1 6 6 H 1.07999 * 120.00035 * 240.00154 * 5 3 2 7 7 C 1.37878 * 119.99749 * 59.99956 * 5 3 2 8 8 N 1.31515 * 120.00031 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00196 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47276 * 59.99855 * 9 7 5 11 11 H 1.48493 * 109.47247 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47111 * 300.00471 * 9 7 5 13 13 C 1.50708 * 109.47071 * 65.00288 * 3 2 1 14 14 O 1.21248 * 119.99869 * 94.99967 * 13 3 2 15 15 C 1.47167 * 119.99849 * 275.00273 * 13 3 2 16 16 C 1.39844 * 120.17124 * 179.97438 * 15 13 3 17 17 C 1.37886 * 119.82546 * 179.97438 * 16 15 13 18 18 C 1.38405 * 120.17263 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.82784 * 179.74779 * 18 17 16 20 20 C 1.52999 * 117.49857 * 188.62277 * 19 18 17 21 21 C 1.53005 * 117.49999 * 119.99619 * 19 18 17 22 22 C 1.38402 * 120.34865 * 0.02562 * 18 17 16 23 23 C 1.37886 * 120.17250 * 0.02562 * 22 18 17 24 24 H 1.08999 * 109.46625 * 299.99930 * 1 2 3 25 25 H 1.08997 * 109.46847 * 59.99704 * 1 2 3 26 26 H 1.08993 * 109.47113 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47275 * 239.99783 * 2 1 3 28 28 H 1.09005 * 109.47423 * 120.00447 * 2 1 3 29 29 H 0.96996 * 120.00164 * 180.02562 * 8 7 5 30 30 H 1.07999 * 120.09086 * 359.97438 * 16 15 13 31 31 H 1.07997 * 119.91876 * 180.02562 * 17 16 15 32 32 H 1.09005 * 115.55006 * 334.32981 * 19 18 17 33 33 H 1.08995 * 117.50257 * 359.97438 * 20 19 18 34 34 H 1.09002 * 117.49697 * 145.02648 * 20 19 18 35 35 H 1.08999 * 117.49924 * 214.98133 * 21 19 18 36 36 H 1.09000 * 117.49397 * 359.97438 * 21 19 18 37 37 H 1.08005 * 119.91752 * 179.97438 * 22 18 17 38 38 H 1.08005 * 120.08922 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8799 -1.3812 10 1 6.5968 0.1451 -0.2344 11 1 6.3978 0.2166 -2.6504 12 1 6.5006 2.2798 -1.3808 13 6 1.6415 2.1162 1.2878 14 8 2.4159 2.1482 2.2202 15 6 0.3123 2.7353 1.4136 16 6 -0.0615 3.3610 2.6071 17 6 -1.3085 3.9392 2.7169 18 6 -2.1890 3.9019 1.6498 19 6 -3.5521 4.5313 1.7803 20 6 -4.5542 4.2869 0.6503 21 6 -3.9036 5.6623 0.8117 22 6 -1.8265 3.2845 0.4653 23 6 -0.5836 2.7009 0.3401 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.8292 -0.0610 -2.9499 30 1 0.6246 3.3913 3.4406 31 1 -1.5986 4.4232 3.6378 32 1 -3.9439 4.5979 2.7953 33 1 -4.2276 3.6712 -0.1877 34 1 -5.6056 4.1926 0.9218 35 1 -4.5271 6.4728 1.1893 36 1 -3.1488 5.9514 0.0804 37 1 -2.5193 3.2591 -0.3629 38 1 -0.3019 2.2198 -0.5850 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094522692.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:20 Heat of formation + Delta-G solvation = -11.183720 kcal Electronic energy + Delta-G solvation = -18845.025560 eV Core-core repulsion = 16038.341837 eV Total energy + Delta-G solvation = -2806.683723 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.22398 -39.70877 -37.37348 -36.39186 -33.88038 -31.84818 -31.59810 -29.68271 -26.52745 -24.94376 -23.91142 -23.12412 -22.71136 -21.40375 -20.16797 -18.65429 -17.84783 -17.20539 -16.55387 -16.22720 -15.96819 -15.62340 -15.41919 -14.85932 -14.74821 -14.21280 -14.02704 -13.84566 -13.64124 -13.36293 -13.20265 -12.83520 -12.60150 -12.44990 -12.25686 -12.14388 -11.98729 -11.88338 -11.57348 -11.38685 -11.19328 -10.98786 -10.54295 -10.14043 -9.88609 -9.46507 -8.15800 -6.28245 -0.24205 0.45915 1.38906 1.40272 1.48504 1.60731 2.40306 2.75279 3.11185 3.19571 3.38679 3.63513 3.88802 3.99869 4.07187 4.18374 4.30938 4.38283 4.48509 4.53212 4.58746 4.65110 4.80539 4.84535 4.93019 5.00730 5.02215 5.13310 5.19650 5.25452 5.32137 5.32634 5.42849 5.52062 5.58555 5.62251 5.72905 5.96503 5.97908 6.24375 6.74914 6.89237 7.38621 8.88531 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.032824 B = 0.004884 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.821193 B = 5732.131219 C = 5992.262726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 C 0.008 3.992 4 H 0.045 0.955 5 C -0.539 4.539 6 H 0.042 0.958 7 C 0.024 3.976 8 N -0.905 5.905 9 Si 0.952 3.048 10 H -0.278 1.278 11 H -0.272 1.272 12 H -0.274 1.274 13 C 0.398 3.602 14 O -0.505 6.505 15 C -0.190 4.190 16 C -0.077 4.077 17 C -0.130 4.130 18 C -0.021 4.021 19 C -0.133 4.133 20 C -0.170 4.170 21 C -0.164 4.164 22 C -0.139 4.139 23 C -0.065 4.065 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.018 0.982 29 H 0.266 0.734 30 H 0.121 0.879 31 H 0.152 0.848 32 H 0.129 0.871 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.151 0.849 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.699 7.362 4.053 19.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.141 4.141 3 C -0.011 4.011 4 H 0.062 0.938 5 C -0.577 4.577 6 H 0.060 0.940 7 C -0.176 4.176 8 N -0.544 5.544 9 Si 0.778 3.222 10 H -0.204 1.204 11 H -0.197 1.197 12 H -0.199 1.199 13 C 0.279 3.721 14 O -0.384 6.384 15 C -0.191 4.191 16 C -0.095 4.095 17 C -0.147 4.147 18 C -0.022 4.022 19 C -0.151 4.151 20 C -0.207 4.207 21 C -0.201 4.201 22 C -0.156 4.156 23 C -0.083 4.083 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.139 0.861 31 H 0.170 0.830 32 H 0.147 0.853 33 H 0.118 0.882 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.107 0.893 37 H 0.168 0.832 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.284 7.284 4.349 19.253 hybrid contribution 1.613 -0.268 -0.112 1.639 sum -15.671 7.016 4.236 17.684 Atomic orbital electron populations 1.22132 0.95356 1.01565 1.01288 1.21319 0.94978 0.96581 1.01202 1.19127 0.96073 0.94514 0.91394 0.93763 1.21275 0.92106 1.38824 1.05522 0.93974 1.25566 1.02412 0.94513 0.95072 1.69920 1.36392 1.38467 1.09627 0.85702 0.80594 0.78408 0.77507 1.20388 1.19694 1.19950 1.23462 0.85113 0.74195 0.89309 1.90310 1.54019 1.51985 1.42124 1.20723 0.96364 1.04892 0.97083 1.21470 0.96993 0.94762 0.96259 1.21109 0.92540 1.00913 1.00167 1.19672 0.94789 0.94729 0.92968 1.21154 0.91986 1.04055 0.97923 1.23199 0.98546 0.99274 0.99633 1.23107 1.03318 0.92409 1.01292 1.21257 0.96195 0.99269 0.98903 1.21837 0.93203 0.95321 0.97956 0.93071 0.91729 0.92404 0.90033 0.96304 0.92468 0.86100 0.83022 0.85288 0.88232 0.86667 0.86693 0.89262 0.83165 0.84573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.44 8.24 71.98 0.59 -4.85 16 2 C -0.10 -4.94 5.23 30.59 0.16 -4.78 16 3 C 0.01 0.40 1.76 -12.28 -0.02 0.38 16 4 H 0.04 2.33 6.74 -2.39 -0.02 2.31 16 5 C -0.54 -31.82 8.33 25.60 0.21 -31.61 16 6 H 0.04 2.63 7.03 -2.91 -0.02 2.61 16 7 C 0.02 1.36 5.29 84.65 0.45 1.81 16 8 N -0.91 -51.05 11.29 21.45 0.24 -50.80 16 9 Si 0.95 45.15 29.54 68.60 2.03 47.18 16 10 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 13 C 0.40 19.29 5.88 28.04 0.16 19.45 16 14 O -0.51 -27.41 15.80 -2.93 -0.05 -27.45 16 15 C -0.19 -7.30 4.91 -20.15 -0.10 -7.40 16 16 C -0.08 -2.55 9.60 22.58 0.22 -2.33 16 17 C -0.13 -3.27 9.71 22.23 0.22 -3.06 16 18 C -0.02 -0.49 5.62 -19.79 -0.11 -0.60 16 19 C -0.13 -2.13 6.04 -11.54 -0.07 -2.20 16 20 C -0.17 -2.22 9.85 30.60 0.30 -1.91 16 21 C -0.16 -2.25 10.17 30.60 0.31 -1.94 16 22 C -0.14 -3.51 9.28 22.23 0.21 -3.30 16 23 C -0.07 -2.13 7.06 22.58 0.16 -1.97 16 24 H 0.05 1.83 5.31 -2.39 -0.01 1.82 16 25 H 0.06 2.22 6.47 -2.39 -0.02 2.20 16 26 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.08 4.30 5.95 -2.39 -0.01 4.29 16 28 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 30 H 0.12 4.12 7.65 -2.91 -0.02 4.10 16 31 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 32 H 0.13 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.10 1.34 6.16 -2.39 -0.01 1.32 16 34 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.11 1.16 8.14 -2.39 -0.02 1.15 16 36 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.15 2.96 5.99 -2.91 -0.02 2.95 16 38 H 0.14 4.61 4.25 -2.91 -0.01 4.60 16 Total: -1.00 -66.94 305.71 5.98 -60.97 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 1.06 Total: 14.42 kcal Atomic # 6 Polarization: -47.00 SS G_CDS: 2.69 Total: -44.31 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.24 Total: -50.80 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.05 Total: -27.45 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -66.94 5.98 -60.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094522692.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.785 kcal (2) G-P(sol) polarization free energy of solvation -66.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds