Wall clock time and date at job start Mon Mar 30 2020 07:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99739 * 180.02562 * 7 2 1 10 10 N 1.49359 * 108.73035 * 297.52777 * 9 7 2 11 11 O 1.42093 * 108.33627 * 55.06496 * 9 7 2 12 12 C 1.81407 * 108.33007 * 180.02562 * 9 7 2 13 13 C 1.50695 * 109.46977 * 179.97438 * 12 9 7 14 14 C 1.38243 * 119.98870 * 269.72605 * 13 12 9 15 15 C 1.38210 * 120.01217 * 179.73008 * 14 13 12 16 16 C 1.38358 * 119.98921 * 0.54545 * 15 14 13 17 17 Cl 1.73599 * 120.01452 * 179.70754 * 16 15 14 18 18 C 1.38353 * 119.97134 * 359.72363 * 16 15 14 19 19 C 1.38217 * 119.98720 * 0.02562 * 18 16 15 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 0.97001 * 119.99671 * 297.53519 * 10 9 7 22 22 H 1.09000 * 109.46855 * 299.99451 * 12 9 7 23 23 H 1.08999 * 109.46939 * 59.99762 * 12 9 7 24 24 H 1.07998 * 119.98994 * 359.97438 * 14 13 12 25 25 H 1.08003 * 120.00813 * 180.26690 * 15 14 13 26 26 H 1.08001 * 120.00841 * 179.97438 * 18 16 15 27 27 H 1.07998 * 119.99429 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 16 3.7665 -1.1941 0.0001 10 7 4.2466 -0.5395 -1.2536 11 8 4.2131 -0.4224 1.1066 12 6 4.3371 -2.9161 -0.0016 13 6 5.8438 -2.9460 -0.0016 14 6 6.5344 -2.9643 -1.1990 15 6 7.9164 -2.9861 -1.1997 16 6 8.6084 -3.0010 -0.0017 17 17 10.3440 -3.0361 -0.0018 18 6 7.9165 -2.9884 1.1963 19 6 6.5346 -2.9613 1.1958 20 1 -0.4850 0.8401 0.0004 21 1 4.0349 -0.9296 -2.1161 22 1 3.9633 -3.4235 0.8878 23 1 3.9639 -3.4216 -0.8922 24 1 5.9941 -2.9575 -2.1341 25 1 8.4560 -2.9960 -2.1352 26 1 8.4560 -3.0004 2.1318 27 1 5.9944 -2.9518 2.1309 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107931485.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:25 Heat of formation + Delta-G solvation = 10.038200 kcal Electronic energy + Delta-G solvation = -14830.576099 eV Core-core repulsion = 12128.040549 eV Total energy + Delta-G solvation = -2702.535550 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.017 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.26757 -36.50689 -34.87652 -33.14257 -32.54208 -31.07253 -30.68318 -26.91040 -26.36812 -22.78248 -21.52781 -18.49433 -17.34515 -17.02555 -15.85034 -15.58983 -15.35544 -14.82610 -13.89832 -13.67092 -13.47699 -13.27217 -12.94228 -12.70168 -12.24357 -11.70697 -11.40439 -11.36892 -11.16347 -10.94904 -10.80038 -10.67708 -10.24547 -9.73701 -9.30888 -8.97035 -8.54549 -8.11591 -7.62582 -6.86203 -5.49634 0.99271 1.37246 1.63861 2.13426 3.23610 3.33950 3.59077 3.72715 4.17000 4.50427 4.56483 4.75368 4.88882 4.93273 5.10268 5.33775 5.39837 5.52679 5.67758 5.90116 5.95570 6.03574 6.26602 6.28587 6.59377 6.85075 7.34642 8.00753 8.40522 8.63079 10.21408 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.047448 B = 0.005570 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.978031 B = 5025.562625 C = 5157.847956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.153 3.847 3 Si 0.808 3.192 4 H -0.258 1.258 5 H -0.174 1.174 6 H -0.276 1.276 7 C -0.987 4.987 8 H 0.117 0.883 9 S 2.393 3.607 10 N -1.268 6.268 11 O -0.954 6.954 12 C -0.590 4.590 13 C -0.048 4.048 14 C -0.093 4.093 15 C -0.107 4.107 16 C -0.041 4.041 17 Cl -0.081 7.081 18 C -0.107 4.107 19 C -0.102 4.102 20 H 0.283 0.717 21 H 0.367 0.633 22 H 0.122 0.878 23 H 0.127 0.873 24 H 0.136 0.864 25 H 0.133 0.867 26 H 0.133 0.867 27 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.127 -8.031 -1.504 14.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.068 4.068 3 Si 0.628 3.372 4 H -0.183 1.183 5 H -0.095 1.095 6 H -0.202 1.202 7 C -1.126 5.126 8 H 0.135 0.865 9 S 2.574 3.426 10 N -1.078 6.078 11 O -0.942 6.942 12 C -0.715 4.715 13 C -0.050 4.050 14 C -0.112 4.112 15 C -0.126 4.126 16 C -0.068 4.068 17 Cl -0.052 7.052 18 C -0.126 4.126 19 C -0.121 4.121 20 H 0.093 0.907 21 H 0.187 0.813 22 H 0.141 0.859 23 H 0.146 0.854 24 H 0.153 0.847 25 H 0.151 0.849 26 H 0.151 0.849 27 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 12.911 -6.888 -0.752 14.653 hybrid contribution -0.716 -0.495 -0.361 0.942 sum 12.196 -7.383 -1.113 14.300 Atomic orbital electron populations 1.70001 1.06929 1.29604 1.38403 1.24503 0.94701 0.99665 0.87910 0.87809 0.85195 0.81979 0.82191 1.18267 1.09491 1.20212 1.29889 1.12658 1.02053 1.67987 0.86499 1.10087 0.78667 0.73810 0.80060 1.72998 1.75713 1.44561 1.14546 1.93264 1.83513 1.62763 1.54657 1.29756 0.99231 1.32171 1.10352 1.19176 0.93165 0.98939 0.93684 1.21019 0.93306 0.98831 0.98045 1.20979 0.94101 1.00699 0.96811 1.20888 0.83946 1.06586 0.95369 1.98347 1.10810 1.97052 1.98987 1.20974 0.94029 1.00719 0.96891 1.21100 0.93491 0.99190 0.98277 0.90729 0.81336 0.85940 0.85416 0.84652 0.84864 0.84867 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.94 13.96 55.43 0.77 -22.16 15 2 C 0.15 4.20 5.47 -17.82 -0.10 4.10 15 3 Si 0.81 20.61 25.94 -169.99 -4.41 16.20 15 4 H -0.26 -6.79 7.11 56.52 0.40 -6.39 15 5 H -0.17 -4.47 5.24 56.52 0.30 -4.17 15 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 15 7 C -0.99 -25.12 10.33 30.60 0.32 -24.80 15 8 H 0.12 2.95 8.06 -52.49 -0.42 2.53 15 9 S 2.39 52.79 3.61 -107.50 -0.39 52.40 15 10 N -1.27 -27.91 11.50 60.35 0.69 -27.22 15 11 O -0.95 -24.81 16.00 -35.23 -0.56 -25.37 15 12 C -0.59 -9.60 6.25 36.00 0.22 -9.38 15 13 C -0.05 -0.78 5.13 -104.62 -0.54 -1.31 15 14 C -0.09 -1.34 9.70 -39.59 -0.38 -1.73 15 15 C -0.11 -1.44 9.83 -39.55 -0.39 -1.83 15 16 C -0.04 -0.56 6.32 -39.49 -0.25 -0.81 15 17 Cl -0.08 -0.97 28.96 -51.86 -1.50 -2.47 15 18 C -0.11 -1.49 9.83 -39.55 -0.39 -1.88 15 19 C -0.10 -1.55 9.70 -39.59 -0.38 -1.94 15 20 H 0.28 7.25 8.31 -40.82 -0.34 6.91 15 21 H 0.37 6.92 8.92 -21.58 -0.19 6.73 15 22 H 0.12 1.79 8.09 -51.92 -0.42 1.37 15 23 H 0.13 1.72 8.08 -51.92 -0.42 1.31 15 24 H 0.14 1.67 8.06 -52.49 -0.42 1.24 15 25 H 0.13 1.46 8.06 -52.48 -0.42 1.04 15 26 H 0.13 1.53 8.06 -52.49 -0.42 1.11 15 27 H 0.14 1.88 8.06 -52.49 -0.42 1.46 15 LS Contribution 265.66 15.07 4.00 4.00 Total: -1.00 -31.68 265.66 -5.67 -37.35 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -2.39 Total: 6.85 kcal Atomic # 6 Polarization: -37.68 SS G_CDS: -1.89 Total: -39.57 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: 1.47 Total: -49.38 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.56 Total: -25.37 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.41 Total: 16.20 kcal Atomic # 16 Polarization: 52.79 SS G_CDS: -0.39 Total: 52.40 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.68 -5.67 -37.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107931485.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.387 kcal (2) G-P(sol) polarization free energy of solvation -31.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds