Wall clock time and date at job start Mon Mar 30 2020 07:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46632 * 2 1 4 4 C 1.53001 * 109.46886 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46886 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 3 7 7 C 1.37850 * 126.53633 * 90.02950 * 6 5 4 8 8 C 1.40190 * 125.30647 * 359.95886 * 7 6 5 9 9 H 1.08004 * 119.99770 * 0.02562 * 8 7 6 10 10 C 1.40345 * 120.00423 * 179.97438 * 8 7 6 11 11 N 1.30587 * 119.99815 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00348 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.46994 * 60.00204 * 12 10 8 14 14 H 1.48494 * 109.47276 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46851 * 300.00753 * 12 10 8 16 16 N 1.32468 * 109.39444 * 179.97438 * 7 6 5 17 17 C 1.33972 * 109.77694 * 359.97438 * 16 7 6 18 18 C 1.40540 * 133.19506 * 179.97438 * 17 16 7 19 19 C 1.36357 * 119.84760 * 180.02562 * 18 17 16 20 20 C 1.39043 * 120.75990 * 359.97438 * 19 18 17 21 21 C 1.37962 * 120.57274 * 0.02562 * 20 19 18 22 22 C 1.37958 * 126.54257 * 269.71235 * 6 5 4 23 23 H 1.09004 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47420 * 299.99415 * 1 2 3 25 25 H 1.08992 * 109.47457 * 59.99756 * 1 2 3 26 26 H 1.08992 * 109.46876 * 240.00480 * 2 1 3 27 27 H 1.09001 * 109.46735 * 120.00028 * 2 1 3 28 28 H 1.09001 * 109.46741 * 60.00169 * 3 2 1 29 29 H 1.09002 * 109.47398 * 300.00272 * 3 2 1 30 30 H 1.09001 * 109.46652 * 60.00345 * 4 3 2 31 31 H 1.08992 * 109.47514 * 300.00434 * 4 3 2 32 32 H 1.09002 * 109.47398 * 300.00496 * 5 4 3 33 33 H 1.09001 * 109.47194 * 60.00677 * 5 4 3 34 34 H 0.97005 * 119.99754 * 179.97438 * 11 10 8 35 35 H 1.07993 * 120.07700 * 359.97438 * 18 17 16 36 36 H 1.07999 * 119.61660 * 180.02562 * 19 18 17 37 37 H 1.08003 * 119.71010 * 180.02562 * 20 19 18 38 38 H 1.08002 * 120.11421 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0798 2.8852 0.0013 6 7 5.5448 2.8852 0.0013 7 6 6.3655 2.8863 -1.1063 8 6 5.9286 2.8868 -2.4384 9 1 4.8715 2.8866 -2.6600 10 6 6.8647 2.8884 -3.4840 11 7 8.1428 2.8891 -3.2161 12 14 6.2826 2.8897 -5.2590 13 1 5.4623 4.1020 -5.5100 14 1 7.4586 2.8908 -6.1657 15 1 5.4639 1.6770 -5.5123 16 7 7.6313 2.8865 -0.7159 17 6 7.6929 2.8862 0.6224 18 6 8.7606 2.8858 1.5363 19 6 8.5071 2.8850 2.8761 20 6 7.2010 2.8851 3.3527 21 6 6.1346 2.8855 2.4774 22 6 6.3662 2.8903 1.1097 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6765 1.9563 0.8900 29 1 1.6765 1.9564 -0.8900 30 1 3.9336 0.9287 -0.8892 31 1 3.9330 0.9289 0.8907 32 1 3.7168 3.3993 -0.8886 33 1 3.7162 3.3987 0.8913 34 1 8.7899 2.8899 -3.9388 35 1 9.7795 2.8853 1.1782 36 1 9.3305 2.8851 3.5750 37 1 7.0197 2.8848 4.4174 38 1 5.1230 2.8851 2.8558 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110950009.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:22 Heat of formation + Delta-G solvation = 37.852758 kcal Electronic energy + Delta-G solvation = -18800.620434 eV Core-core repulsion = 16028.355844 eV Total energy + Delta-G solvation = -2772.264590 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.36265 -36.44894 -35.73382 -33.63219 -32.96270 -30.46363 -28.98667 -28.48501 -25.85317 -25.52824 -22.11826 -21.31609 -20.88418 -20.60840 -19.34359 -16.94036 -16.22941 -15.85003 -15.47446 -14.82481 -14.21195 -14.03857 -13.73421 -13.69278 -12.87661 -12.83779 -12.78675 -12.65054 -11.90551 -11.72815 -11.54243 -11.38266 -11.14209 -10.99554 -10.91783 -10.73832 -10.59416 -10.42975 -10.40336 -10.25185 -10.14911 -9.32227 -8.96502 -7.88719 -7.21770 -6.83673 -6.66584 -4.61524 2.27203 2.73019 3.00599 3.01876 3.03704 3.78677 4.06012 4.15559 4.87093 4.97793 5.02089 5.14827 5.30241 5.49582 5.59389 5.61777 5.63908 5.75084 5.81399 5.87176 5.94263 6.01765 6.04876 6.08432 6.10498 6.28346 6.40361 6.44984 6.57125 6.62113 6.75181 6.89294 7.00835 7.27763 7.49212 7.63108 7.75716 7.93322 8.00549 8.33771 8.64821 9.04340 9.96903 10.22616 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.010305 B = 0.009333 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.361394 B = 2999.350055 C = 5512.422735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.135 4.135 5 C 0.133 3.867 6 N -0.539 5.539 7 C 0.420 3.580 8 C -0.441 4.441 9 H 0.086 0.914 10 C 0.077 3.923 11 N -0.717 5.717 12 Si 0.916 3.084 13 H -0.264 1.264 14 H -0.275 1.275 15 H -0.264 1.264 16 N -0.537 5.537 17 C 0.108 3.892 18 C -0.129 4.129 19 C -0.124 4.124 20 C -0.183 4.183 21 C -0.103 4.103 22 C -0.004 4.004 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.279 0.721 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.633 -2.303 3.424 10.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.174 4.174 5 C 0.009 3.991 6 N -0.234 5.234 7 C 0.184 3.816 8 C -0.478 4.478 9 H 0.104 0.896 10 C -0.150 4.150 11 N -0.338 5.338 12 Si 0.740 3.260 13 H -0.189 1.189 14 H -0.200 1.200 15 H -0.189 1.189 16 N -0.260 5.260 17 C -0.019 4.019 18 C -0.151 4.151 19 C -0.145 4.145 20 C -0.203 4.203 21 C -0.125 4.125 22 C -0.112 4.112 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.844 -2.293 2.766 9.546 hybrid contribution -0.998 -0.017 -0.177 1.014 sum -9.842 -2.310 2.589 10.436 Atomic orbital electron populations 1.21775 0.96163 1.01280 1.01640 1.21522 0.95435 0.97152 1.02131 1.21536 0.95227 0.96692 1.01854 1.21993 0.94752 0.97604 1.03066 1.21263 0.79065 0.96576 1.02155 1.45532 1.04668 1.67797 1.05431 1.20438 0.83297 0.90445 0.87443 1.18449 0.94603 1.47946 0.86797 0.89577 1.25855 0.94395 0.93505 1.01242 1.69970 1.01486 1.28026 1.34364 0.86242 0.79236 0.79880 0.80646 1.18855 1.19977 1.18851 1.71394 1.16004 1.32619 1.06001 1.19581 0.90983 0.98748 0.92616 1.19772 0.96688 1.07119 0.91502 1.20206 0.95838 1.03861 0.94586 1.20282 0.92311 1.10435 0.97316 1.19586 0.97674 1.05543 0.89662 1.18894 0.92617 1.10849 0.88793 0.93041 0.92929 0.92800 0.91916 0.92178 0.92245 0.91836 0.90968 0.92056 0.90157 0.91657 0.90930 0.87460 0.87870 0.87920 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.08 16 2 C -0.12 -1.42 5.93 -26.73 -0.16 -1.58 16 3 C -0.11 -1.43 5.21 -26.73 -0.14 -1.57 16 4 C -0.14 -2.18 5.54 -26.73 -0.15 -2.33 16 5 C 0.13 2.44 5.90 -4.04 -0.02 2.42 16 6 N -0.54 -12.74 2.86 -113.48 -0.32 -13.07 16 7 C 0.42 11.39 7.41 -155.68 -1.15 10.24 16 8 C -0.44 -11.28 8.99 -38.06 -0.34 -11.62 16 9 H 0.09 1.99 7.10 -52.48 -0.37 1.62 16 10 C 0.08 1.92 5.50 -17.29 -0.10 1.83 16 11 N -0.72 -19.13 11.85 55.57 0.66 -18.48 16 12 Si 0.92 17.96 29.56 -169.99 -5.03 12.94 16 13 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 14 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 15 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 16 N -0.54 -15.61 9.33 -10.31 -0.10 -15.70 16 17 C 0.11 2.88 7.21 -84.89 -0.61 2.27 16 18 C -0.13 -3.03 10.07 -39.39 -0.40 -3.42 16 19 C -0.12 -2.50 9.96 -39.96 -0.40 -2.90 16 20 C -0.18 -3.56 10.04 -39.38 -0.40 -3.96 16 21 C -0.10 -2.16 10.04 -39.50 -0.40 -2.55 16 22 C 0.00 -0.10 6.88 -83.75 -0.58 -0.67 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.08 1.42 7.32 -51.93 -0.38 1.04 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.28 6.74 8.29 -40.82 -0.34 6.40 16 35 H 0.11 2.39 8.06 -52.49 -0.42 1.97 16 36 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 38 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 319.88 15.07 4.82 4.82 Total: -1.00 -30.01 319.88 -10.24 -40.25 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.81 Total: 4.16 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -4.47 Total: -14.93 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.24 Total: -47.24 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.01 -10.24 -40.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110950009.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.106 kcal (2) G-P(sol) polarization free energy of solvation -30.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds