Wall clock time and date at job start Mon Mar 30 2020 07:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46632 * 2 1 4 4 C 1.53001 * 109.46886 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46886 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 3 7 7 C 1.37850 * 126.53633 * 90.02950 * 6 5 4 8 8 C 1.40190 * 125.30647 * 359.95886 * 7 6 5 9 9 H 1.08004 * 119.99770 * 0.02562 * 8 7 6 10 10 C 1.40345 * 120.00423 * 179.97438 * 8 7 6 11 11 N 1.30587 * 119.99815 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00348 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.46994 * 60.00204 * 12 10 8 14 14 H 1.48494 * 109.47276 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46851 * 300.00753 * 12 10 8 16 16 N 1.32468 * 109.39444 * 179.97438 * 7 6 5 17 17 C 1.33972 * 109.77694 * 359.97438 * 16 7 6 18 18 C 1.40540 * 133.19506 * 179.97438 * 17 16 7 19 19 C 1.36357 * 119.84760 * 180.02562 * 18 17 16 20 20 C 1.39043 * 120.75990 * 359.97438 * 19 18 17 21 21 C 1.37962 * 120.57274 * 0.02562 * 20 19 18 22 22 C 1.37958 * 126.54257 * 269.71235 * 6 5 4 23 23 H 1.09004 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47420 * 299.99415 * 1 2 3 25 25 H 1.08992 * 109.47457 * 59.99756 * 1 2 3 26 26 H 1.08992 * 109.46876 * 240.00480 * 2 1 3 27 27 H 1.09001 * 109.46735 * 120.00028 * 2 1 3 28 28 H 1.09001 * 109.46741 * 60.00169 * 3 2 1 29 29 H 1.09002 * 109.47398 * 300.00272 * 3 2 1 30 30 H 1.09001 * 109.46652 * 60.00345 * 4 3 2 31 31 H 1.08992 * 109.47514 * 300.00434 * 4 3 2 32 32 H 1.09002 * 109.47398 * 300.00496 * 5 4 3 33 33 H 1.09001 * 109.47194 * 60.00677 * 5 4 3 34 34 H 0.97005 * 119.99754 * 179.97438 * 11 10 8 35 35 H 1.07993 * 120.07700 * 359.97438 * 18 17 16 36 36 H 1.07999 * 119.61660 * 180.02562 * 19 18 17 37 37 H 1.08003 * 119.71010 * 180.02562 * 20 19 18 38 38 H 1.08002 * 120.11421 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0798 2.8852 0.0013 6 7 5.5448 2.8852 0.0013 7 6 6.3655 2.8863 -1.1063 8 6 5.9286 2.8868 -2.4384 9 1 4.8715 2.8866 -2.6600 10 6 6.8647 2.8884 -3.4840 11 7 8.1428 2.8891 -3.2161 12 14 6.2826 2.8897 -5.2590 13 1 5.4623 4.1020 -5.5100 14 1 7.4586 2.8908 -6.1657 15 1 5.4639 1.6770 -5.5123 16 7 7.6313 2.8865 -0.7159 17 6 7.6929 2.8862 0.6224 18 6 8.7606 2.8858 1.5363 19 6 8.5071 2.8850 2.8761 20 6 7.2010 2.8851 3.3527 21 6 6.1346 2.8855 2.4774 22 6 6.3662 2.8903 1.1097 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6765 1.9563 0.8900 29 1 1.6765 1.9564 -0.8900 30 1 3.9336 0.9287 -0.8892 31 1 3.9330 0.9289 0.8907 32 1 3.7168 3.3993 -0.8886 33 1 3.7162 3.3987 0.8913 34 1 8.7899 2.8899 -3.9388 35 1 9.7795 2.8853 1.1782 36 1 9.3305 2.8851 3.5750 37 1 7.0197 2.8848 4.4174 38 1 5.1230 2.8851 2.8558 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110950009.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:19 Heat of formation + Delta-G solvation = 22.914643 kcal Electronic energy + Delta-G solvation = -18801.268199 eV Core-core repulsion = 16028.355844 eV Total energy + Delta-G solvation = -2772.912356 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.15645 -37.97890 -37.08471 -35.38426 -34.49447 -31.91458 -30.69379 -30.16546 -27.66560 -26.81292 -23.39552 -23.09161 -22.35025 -21.91406 -21.07554 -18.78576 -17.90948 -17.50990 -16.60752 -16.52071 -15.85062 -15.67113 -15.00008 -14.84963 -14.44738 -14.38473 -14.20771 -14.13146 -13.30115 -13.10214 -13.00244 -12.87793 -12.62853 -12.34005 -12.27188 -12.08217 -12.02575 -11.85286 -11.82780 -11.70351 -11.42443 -11.05754 -10.74705 -9.80852 -9.03059 -8.62142 -8.49798 -6.54875 0.51369 1.01293 1.39700 1.46255 1.54402 2.14793 2.34653 2.41929 3.17952 3.61797 3.82580 3.85775 3.97606 4.15974 4.17662 4.31169 4.43530 4.46695 4.48675 4.57502 4.67908 4.81390 4.88005 4.90008 4.96511 5.02353 5.05002 5.17059 5.19068 5.23847 5.33889 5.39667 5.48658 5.58372 5.68926 5.92007 5.98035 6.17138 6.24437 6.54418 6.79032 7.21403 8.08227 8.42883 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.010305 B = 0.009333 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.361394 B = 2999.350055 C = 5512.422735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.106 4.106 4 C -0.122 4.122 5 C 0.127 3.873 6 N -0.539 5.539 7 C 0.391 3.609 8 C -0.468 4.468 9 H 0.101 0.899 10 C 0.030 3.970 11 N -0.770 5.770 12 Si 0.999 3.001 13 H -0.253 1.253 14 H -0.271 1.271 15 H -0.254 1.254 16 N -0.587 5.587 17 C 0.050 3.950 18 C -0.150 4.150 19 C -0.117 4.117 20 C -0.163 4.163 21 C -0.106 4.106 22 C -0.021 4.021 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.283 0.717 35 H 0.102 0.898 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.873 -2.306 4.996 13.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.144 4.144 4 C -0.161 4.161 5 C 0.004 3.996 6 N -0.234 5.234 7 C 0.152 3.848 8 C -0.505 4.505 9 H 0.119 0.881 10 C -0.192 4.192 11 N -0.393 5.393 12 Si 0.817 3.183 13 H -0.177 1.177 14 H -0.195 1.195 15 H -0.178 1.178 16 N -0.312 5.312 17 C -0.075 4.075 18 C -0.171 4.171 19 C -0.137 4.137 20 C -0.184 4.184 21 C -0.128 4.128 22 C -0.129 4.129 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.120 0.880 36 H 0.161 0.839 37 H 0.168 0.832 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.110 -2.299 4.395 12.167 hybrid contribution -0.248 -0.015 -0.398 0.469 sum -11.358 -2.314 3.997 12.261 Atomic orbital electron populations 1.21741 0.94375 1.02092 1.02258 1.21519 0.96963 0.96188 1.01646 1.21493 0.92048 0.97818 1.03013 1.21858 0.97412 0.95623 1.01204 1.21606 0.76375 0.98239 1.03335 1.45726 1.06346 1.66915 1.04443 1.20790 0.83763 0.91418 0.88819 1.18898 0.95638 1.49013 0.86995 0.88071 1.26979 0.94108 0.92072 1.06062 1.70122 1.03150 1.30013 1.36058 0.85027 0.78806 0.80421 0.74025 1.17678 1.19520 1.17805 1.71243 1.17916 1.34173 1.07875 1.20134 0.93354 1.01485 0.92538 1.20058 0.96018 1.08086 0.92919 1.20665 0.97818 1.01657 0.93579 1.20897 0.91351 1.06651 0.99467 1.20042 0.99937 1.04569 0.88218 1.19318 0.91925 1.11408 0.90295 0.92210 0.92058 0.92424 0.92874 0.92340 0.90533 0.91150 0.93652 0.93076 0.89888 0.89398 0.90663 0.87996 0.83851 0.83205 0.85601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.91 71.98 0.71 -1.73 16 2 C -0.13 -2.65 5.93 30.60 0.18 -2.46 16 3 C -0.11 -2.43 5.21 30.59 0.16 -2.27 16 4 C -0.12 -3.90 5.54 30.59 0.17 -3.73 16 5 C 0.13 4.58 5.90 86.38 0.51 5.09 16 6 N -0.54 -26.14 2.86 -512.94 -1.46 -27.61 16 7 C 0.39 22.28 7.41 133.69 0.99 23.27 16 8 C -0.47 -24.98 8.99 23.26 0.21 -24.77 16 9 H 0.10 4.82 7.10 -2.91 -0.02 4.80 16 10 C 0.03 1.55 5.50 85.39 0.47 2.02 16 11 N -0.77 -43.50 11.85 21.89 0.26 -43.24 16 12 Si 1.00 37.58 29.56 68.60 2.03 39.61 16 13 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 14 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 15 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 16 N -0.59 -36.25 9.33 -186.52 -1.74 -37.99 16 17 C 0.05 2.79 7.21 40.14 0.29 3.08 16 18 C -0.15 -7.11 10.07 22.39 0.23 -6.89 16 19 C -0.12 -4.41 9.96 22.02 0.22 -4.19 16 20 C -0.16 -5.72 10.04 22.40 0.22 -5.50 16 21 C -0.11 -4.19 10.04 22.32 0.22 -3.97 16 22 C -0.02 -1.05 6.88 39.06 0.27 -0.78 16 23 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 2.92 7.32 -2.39 -0.02 2.90 16 33 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.28 14.46 8.29 -92.70 -0.77 13.69 16 35 H 0.10 4.76 8.06 -2.91 -0.02 4.73 16 36 H 0.14 4.22 8.06 -2.91 -0.02 4.19 16 37 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 38 H 0.13 4.13 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -70.33 319.88 4.96 -65.37 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: 1.03 Total: 26.69 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 4.86 Total: -22.83 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -2.95 Total: -108.84 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Total: -70.33 4.96 -65.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110950009.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.280 kcal (2) G-P(sol) polarization free energy of solvation -70.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds