Wall clock time and date at job start Mon Mar 30 2020 07:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52988 * 109.47192 * 2 1 4 4 H 1.09006 * 109.47269 * 55.00191 * 3 2 1 5 5 C 1.53003 * 109.47478 * 294.99877 * 3 2 1 6 6 C 1.53000 * 109.47123 * 174.99948 * 3 2 1 7 7 N 1.46500 * 109.47286 * 185.00175 * 6 3 2 8 8 C 1.37851 * 126.53963 * 269.68926 * 7 6 3 9 9 C 1.40191 * 125.30088 * 359.97438 * 8 7 6 10 10 H 1.08001 * 120.00354 * 353.58253 * 9 8 7 11 11 C 1.40351 * 119.99797 * 173.58786 * 9 8 7 12 12 N 1.30586 * 119.99844 * 5.81837 * 11 9 8 13 13 Si 1.86800 * 119.99941 * 185.81582 * 11 9 8 14 14 H 1.48499 * 109.46891 * 94.98737 * 13 11 9 15 15 H 1.48501 * 109.47313 * 214.98589 * 13 11 9 16 16 H 1.48497 * 109.47267 * 334.98836 * 13 11 9 17 17 N 1.32467 * 109.39530 * 179.82108 * 8 7 6 18 18 C 1.33972 * 109.77797 * 0.44734 * 17 8 7 19 19 C 1.40533 * 133.19835 * 179.77218 * 18 17 8 20 20 C 1.36360 * 119.85055 * 179.97438 * 19 18 17 21 21 C 1.39042 * 120.76148 * 359.97438 * 20 19 18 22 22 C 1.37961 * 120.56766 * 359.97438 * 21 20 19 23 23 C 1.37966 * 126.54031 * 89.99662 * 7 6 3 24 24 H 1.09004 * 109.47465 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47423 * 299.99932 * 1 2 3 26 26 H 1.09007 * 109.47174 * 59.99787 * 1 2 3 27 27 H 1.09003 * 109.46770 * 240.00057 * 2 1 3 28 28 H 1.09004 * 109.46685 * 120.00234 * 2 1 3 29 29 H 1.08997 * 109.47102 * 59.99877 * 5 3 2 30 30 H 1.08997 * 109.47036 * 300.00229 * 5 3 2 31 31 H 1.08996 * 109.47397 * 179.97438 * 5 3 2 32 32 H 1.09001 * 109.47228 * 304.99870 * 6 3 2 33 33 H 1.08998 * 109.47455 * 64.99924 * 6 3 2 34 34 H 0.97000 * 119.99304 * 180.02562 * 12 11 9 35 35 H 1.08000 * 120.07956 * 359.94527 * 19 18 17 36 36 H 1.08000 * 119.61964 * 180.02562 * 20 19 18 37 37 H 1.07993 * 119.71511 * 180.02562 * 21 20 19 38 38 H 1.08009 * 120.11573 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4442 0.1257 7 7 4.0433 2.8236 0.2459 8 6 4.4078 3.6589 -0.7884 9 6 4.3816 3.3225 -2.1491 10 1 4.1564 2.3102 -2.4509 11 6 4.6480 4.3011 -3.1192 12 7 5.0311 5.4949 -2.7542 13 14 4.4547 3.8958 -4.9324 14 1 3.1058 4.3137 -5.3919 15 1 5.4898 4.6186 -5.7144 16 1 4.6146 2.4331 -5.1326 17 7 4.7835 4.8300 -0.2965 18 6 4.6939 4.8102 1.0401 19 6 4.9668 5.7625 2.0368 20 6 4.7739 5.4460 3.3490 21 6 4.3082 4.1884 3.7162 22 6 4.0316 3.2353 2.7578 23 6 4.2206 3.5326 1.4161 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.5490 2.1252 -1.3970 30 1 2.0699 1.5875 -2.1491 31 1 1.9982 3.1543 -1.3071 32 1 3.8570 0.8799 1.0113 33 1 4.0030 0.9834 -0.7596 34 1 5.2149 6.1714 -3.4247 35 1 5.3290 6.7428 1.7642 36 1 4.9845 6.1809 4.1119 37 1 4.1611 3.9559 4.7605 38 1 3.6697 2.2608 3.0512 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110950310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:36 Heat of formation + Delta-G solvation = 44.217266 kcal Electronic energy + Delta-G solvation = -19425.724049 eV Core-core repulsion = 16653.735444 eV Total energy + Delta-G solvation = -2771.988604 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.42928 -36.88850 -35.73482 -33.53002 -32.32187 -29.90175 -28.69247 -28.44321 -26.21883 -25.67218 -23.23438 -21.33394 -20.69353 -19.74735 -19.32934 -16.93109 -16.13213 -15.82436 -14.92772 -14.82966 -14.72893 -14.02473 -13.40232 -13.27281 -13.06029 -12.78339 -12.64604 -12.25074 -11.77151 -11.70114 -11.49675 -11.42167 -11.27503 -10.95567 -10.77982 -10.57111 -10.50266 -10.40197 -10.28784 -10.15354 -10.07100 -9.28490 -8.95216 -7.88284 -7.19907 -6.82300 -6.66851 -4.59590 2.27171 2.73063 2.98817 3.02378 3.05324 3.79064 4.07812 4.15331 4.93086 5.07679 5.14432 5.21529 5.42806 5.53658 5.66348 5.76978 5.79566 5.86996 5.89536 5.94363 6.01640 6.08245 6.21149 6.25157 6.31571 6.40912 6.47163 6.57375 6.70503 6.75452 6.88769 6.99980 7.02435 7.28238 7.50018 7.63255 7.76809 7.93404 8.02147 8.34426 8.65739 9.05249 9.97360 10.22837 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.013023 B = 0.010058 C = 0.005980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.473963 B = 2783.178379 C = 4681.454164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.106 4.106 4 H 0.067 0.933 5 C -0.144 4.144 6 C 0.137 3.863 7 N -0.536 5.536 8 C 0.423 3.577 9 C -0.437 4.437 10 H 0.088 0.912 11 C 0.078 3.922 12 N -0.717 5.717 13 Si 0.913 3.087 14 H -0.268 1.268 15 H -0.274 1.274 16 H -0.261 1.261 17 N -0.537 5.537 18 C 0.108 3.892 19 C -0.129 4.129 20 C -0.125 4.125 21 C -0.182 4.182 22 C -0.103 4.103 23 C -0.003 4.003 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.278 0.722 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.059 -7.404 2.298 9.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.125 4.125 4 H 0.086 0.914 5 C -0.201 4.201 6 C 0.013 3.987 7 N -0.231 5.231 8 C 0.187 3.813 9 C -0.475 4.475 10 H 0.106 0.894 11 C -0.150 4.150 12 N -0.339 5.339 13 Si 0.736 3.264 14 H -0.193 1.193 15 H -0.199 1.199 16 H -0.185 1.185 17 N -0.261 5.261 18 C -0.020 4.020 19 C -0.151 4.151 20 C -0.145 4.145 21 C -0.203 4.203 22 C -0.125 4.125 23 C -0.111 4.111 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.751 -6.627 1.705 8.330 hybrid contribution -0.389 -0.912 -0.241 1.020 sum -5.140 -7.539 1.464 9.241 Atomic orbital electron populations 1.21789 0.95998 1.00980 1.02019 1.21510 0.95895 0.96384 1.01634 1.21563 0.95544 0.95758 0.99663 0.91432 1.21928 0.99631 1.02680 0.95909 1.21331 0.93550 0.82033 1.01830 1.45507 1.60191 1.12109 1.05308 1.20405 0.89084 0.82946 0.88908 1.18481 1.44888 0.97414 0.86672 0.89443 1.25844 0.93513 0.94437 1.01159 1.69985 1.25678 1.02580 1.35626 0.86225 0.78994 0.79842 0.81316 1.19316 1.19938 1.18483 1.71400 1.31485 1.19688 1.03524 1.19573 0.97825 0.91529 0.93056 1.19771 1.06099 0.98179 0.91014 1.20203 1.02824 0.96411 0.95087 1.20279 1.08451 0.94518 0.97066 1.19585 1.04655 0.98578 0.89677 1.18888 1.09021 0.95290 0.87869 0.93205 0.92981 0.92357 0.91907 0.92389 0.93794 0.92648 0.90734 0.91748 0.90171 0.91057 0.87496 0.87906 0.87954 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.67 37.16 0.36 -1.35 16 2 C -0.12 -1.46 5.40 -26.74 -0.14 -1.61 16 3 C -0.11 -1.70 2.59 -90.62 -0.24 -1.94 16 4 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 5 C -0.14 -2.50 7.75 37.16 0.29 -2.21 16 6 C 0.14 2.48 5.35 -4.04 -0.02 2.46 16 7 N -0.54 -12.40 2.65 -113.48 -0.30 -12.70 16 8 C 0.42 11.15 6.28 -155.68 -0.98 10.17 16 9 C -0.44 -10.85 7.31 -38.05 -0.28 -11.13 16 10 H 0.09 1.98 6.32 -52.49 -0.33 1.65 16 11 C 0.08 1.90 5.49 -17.29 -0.09 1.80 16 12 N -0.72 -18.89 11.88 55.57 0.66 -18.23 16 13 Si 0.91 17.80 29.57 -169.99 -5.03 12.78 16 14 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 15 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 16 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 17 N -0.54 -15.38 9.35 -10.31 -0.10 -15.48 16 18 C 0.11 2.84 7.21 -84.89 -0.61 2.23 16 19 C -0.13 -3.00 10.07 -39.39 -0.40 -3.40 16 20 C -0.12 -2.50 9.96 -39.96 -0.40 -2.89 16 21 C -0.18 -3.54 10.04 -39.38 -0.40 -3.94 16 22 C -0.10 -2.15 10.04 -39.50 -0.40 -2.55 16 23 C 0.00 -0.07 6.88 -83.75 -0.58 -0.65 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.67 6.57 -51.92 -0.34 0.33 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.67 6.56 -51.93 -0.34 0.33 16 30 H 0.05 0.92 7.60 -51.93 -0.39 0.53 16 31 H 0.07 1.59 5.95 -51.93 -0.31 1.28 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.42 7.26 -51.93 -0.38 1.04 16 34 H 0.28 6.64 8.29 -40.82 -0.34 6.30 16 35 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 36 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 38 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 308.46 15.07 4.65 4.65 Total: -1.00 -29.24 308.46 -9.45 -38.69 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.46 Total: 5.29 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -3.88 Total: -15.00 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 0.26 Total: -46.41 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.24 -9.45 -38.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110950310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.911 kcal (2) G-P(sol) polarization free energy of solvation -29.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds