Wall clock time and date at job start Mon Mar 30 2020 07:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52988 * 109.47192 * 2 1 4 4 H 1.09006 * 109.47269 * 55.00191 * 3 2 1 5 5 C 1.53003 * 109.47478 * 294.99877 * 3 2 1 6 6 C 1.53000 * 109.47123 * 174.99948 * 3 2 1 7 7 N 1.46500 * 109.47286 * 185.00175 * 6 3 2 8 8 C 1.37851 * 126.53963 * 269.68926 * 7 6 3 9 9 C 1.40191 * 125.30088 * 359.97438 * 8 7 6 10 10 H 1.08001 * 120.00354 * 353.58253 * 9 8 7 11 11 C 1.40351 * 119.99797 * 173.58786 * 9 8 7 12 12 N 1.30586 * 119.99844 * 5.81837 * 11 9 8 13 13 Si 1.86800 * 119.99941 * 185.81582 * 11 9 8 14 14 H 1.48499 * 109.46891 * 94.98737 * 13 11 9 15 15 H 1.48501 * 109.47313 * 214.98589 * 13 11 9 16 16 H 1.48497 * 109.47267 * 334.98836 * 13 11 9 17 17 N 1.32467 * 109.39530 * 179.82108 * 8 7 6 18 18 C 1.33972 * 109.77797 * 0.44734 * 17 8 7 19 19 C 1.40533 * 133.19835 * 179.77218 * 18 17 8 20 20 C 1.36360 * 119.85055 * 179.97438 * 19 18 17 21 21 C 1.39042 * 120.76148 * 359.97438 * 20 19 18 22 22 C 1.37961 * 120.56766 * 359.97438 * 21 20 19 23 23 C 1.37966 * 126.54031 * 89.99662 * 7 6 3 24 24 H 1.09004 * 109.47465 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47423 * 299.99932 * 1 2 3 26 26 H 1.09007 * 109.47174 * 59.99787 * 1 2 3 27 27 H 1.09003 * 109.46770 * 240.00057 * 2 1 3 28 28 H 1.09004 * 109.46685 * 120.00234 * 2 1 3 29 29 H 1.08997 * 109.47102 * 59.99877 * 5 3 2 30 30 H 1.08997 * 109.47036 * 300.00229 * 5 3 2 31 31 H 1.08996 * 109.47397 * 179.97438 * 5 3 2 32 32 H 1.09001 * 109.47228 * 304.99870 * 6 3 2 33 33 H 1.08998 * 109.47455 * 64.99924 * 6 3 2 34 34 H 0.97000 * 119.99304 * 180.02562 * 12 11 9 35 35 H 1.08000 * 120.07956 * 359.94527 * 19 18 17 36 36 H 1.08000 * 119.61964 * 180.02562 * 20 19 18 37 37 H 1.07993 * 119.71511 * 180.02562 * 21 20 19 38 38 H 1.08009 * 120.11573 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4442 0.1257 7 7 4.0433 2.8236 0.2459 8 6 4.4078 3.6589 -0.7884 9 6 4.3816 3.3225 -2.1491 10 1 4.1564 2.3102 -2.4509 11 6 4.6480 4.3011 -3.1192 12 7 5.0311 5.4949 -2.7542 13 14 4.4547 3.8958 -4.9324 14 1 3.1058 4.3137 -5.3919 15 1 5.4898 4.6186 -5.7144 16 1 4.6146 2.4331 -5.1326 17 7 4.7835 4.8300 -0.2965 18 6 4.6939 4.8102 1.0401 19 6 4.9668 5.7625 2.0368 20 6 4.7739 5.4460 3.3490 21 6 4.3082 4.1884 3.7162 22 6 4.0316 3.2353 2.7578 23 6 4.2206 3.5326 1.4161 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.5490 2.1252 -1.3970 30 1 2.0699 1.5875 -2.1491 31 1 1.9982 3.1543 -1.3071 32 1 3.8570 0.8799 1.0113 33 1 4.0030 0.9834 -0.7596 34 1 5.2149 6.1714 -3.4247 35 1 5.3290 6.7428 1.7642 36 1 4.9845 6.1809 4.1119 37 1 4.1611 3.9559 4.7605 38 1 3.6697 2.2608 3.0512 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110950310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:32 Heat of formation + Delta-G solvation = 29.238988 kcal Electronic energy + Delta-G solvation = -19426.373556 eV Core-core repulsion = 16653.735444 eV Total energy + Delta-G solvation = -2772.638111 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.18612 -38.32695 -37.29190 -35.32540 -33.90871 -31.38983 -30.46490 -29.89978 -27.84949 -27.32490 -24.44851 -23.09644 -22.37390 -21.26300 -20.83330 -18.73618 -17.84324 -17.46253 -16.53262 -16.28097 -16.03165 -15.64071 -14.88567 -14.70398 -14.60343 -14.42113 -14.16050 -13.64114 -13.27739 -13.10042 -12.94941 -12.83620 -12.77039 -12.34796 -12.26081 -12.09624 -12.02932 -11.93910 -11.78762 -11.47960 -11.42023 -11.01610 -10.69899 -9.77389 -8.98083 -8.58683 -8.47667 -6.48935 0.53234 1.03008 1.40347 1.44403 1.55746 2.15767 2.37730 2.44739 3.20553 3.65109 3.79770 3.91189 3.97380 4.10419 4.30062 4.33254 4.44670 4.48698 4.62815 4.68721 4.73891 4.79767 4.86199 4.92248 5.01872 5.06718 5.14546 5.20252 5.21118 5.25915 5.33685 5.48135 5.58233 5.61978 5.72153 5.93480 6.02028 6.21555 6.26005 6.57257 6.82823 7.26139 8.12252 8.45612 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.013023 B = 0.010058 C = 0.005980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.473963 B = 2783.178379 C = 4681.454164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.095 4.095 4 H 0.051 0.949 5 C -0.137 4.137 6 C 0.129 3.871 7 N -0.535 5.535 8 C 0.400 3.600 9 C -0.455 4.455 10 H 0.102 0.898 11 C 0.031 3.969 12 N -0.771 5.771 13 Si 0.991 3.009 14 H -0.264 1.264 15 H -0.272 1.272 16 H -0.245 1.245 17 N -0.590 5.590 18 C 0.051 3.949 19 C -0.151 4.151 20 C -0.118 4.118 21 C -0.165 4.165 22 C -0.107 4.107 23 C -0.020 4.020 24 H 0.070 0.930 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.026 0.974 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.281 0.719 35 H 0.101 0.899 36 H 0.142 0.858 37 H 0.149 0.851 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.163 -9.854 3.554 12.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C -0.115 4.115 4 H 0.069 0.931 5 C -0.195 4.195 6 C 0.007 3.993 7 N -0.229 5.229 8 C 0.161 3.839 9 C -0.492 4.492 10 H 0.120 0.880 11 C -0.191 4.191 12 N -0.394 5.394 13 Si 0.810 3.190 14 H -0.189 1.189 15 H -0.197 1.197 16 H -0.168 1.168 17 N -0.315 5.315 18 C -0.075 4.075 19 C -0.172 4.172 20 C -0.138 4.138 21 C -0.185 4.185 22 C -0.128 4.128 23 C -0.128 4.128 24 H 0.089 0.911 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.160 0.840 37 H 0.166 0.834 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.866 -9.108 3.009 11.243 hybrid contribution -0.054 -0.123 -0.389 0.412 sum -5.920 -9.231 2.619 11.275 Atomic orbital electron populations 1.21780 0.94926 1.02272 1.01672 1.21466 0.96723 0.93526 1.02888 1.21467 0.93893 0.98025 0.98080 0.93057 1.21825 1.00631 0.99961 0.97045 1.21676 0.94946 0.79817 1.02874 1.45663 1.59583 1.13338 1.04362 1.20699 0.89737 0.83384 0.90059 1.18834 1.45482 0.98280 0.86640 0.88044 1.26922 0.92285 0.93863 1.06050 1.70137 1.27826 1.04073 1.37410 0.85067 0.78878 0.80307 0.74743 1.18857 1.19674 1.16783 1.71253 1.33243 1.21743 1.05250 1.20117 1.00422 0.93892 0.93044 1.20044 1.07067 0.97810 0.92271 1.20645 1.01087 0.97756 0.94319 1.20873 1.05238 0.93376 0.99018 1.20027 1.04044 1.00393 0.88368 1.19293 1.09382 0.94754 0.89363 0.91088 0.93251 0.92843 0.90945 0.90848 0.92019 0.92149 0.95463 0.89723 0.89952 0.90862 0.88130 0.84015 0.83368 0.85724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.67 71.98 0.70 -2.26 16 2 C -0.11 -2.40 5.40 30.59 0.17 -2.24 16 3 C -0.10 -2.95 2.59 -10.80 -0.03 -2.98 16 4 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 5 C -0.14 -4.75 7.75 71.98 0.56 -4.19 16 6 C 0.13 4.60 5.35 86.38 0.46 5.06 16 7 N -0.53 -25.31 2.65 -512.93 -1.36 -26.67 16 8 C 0.40 22.15 6.28 133.69 0.84 22.98 16 9 C -0.45 -23.48 7.31 23.26 0.17 -23.31 16 10 H 0.10 4.70 6.32 -2.91 -0.02 4.68 16 11 C 0.03 1.57 5.49 85.39 0.47 2.04 16 12 N -0.77 -43.13 11.88 21.89 0.26 -42.87 16 13 Si 0.99 37.28 29.57 68.60 2.03 39.31 16 14 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 15 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 16 H -0.24 -8.47 7.11 99.48 0.71 -7.76 16 17 N -0.59 -35.94 9.35 -186.52 -1.74 -37.68 16 18 C 0.05 2.80 7.21 40.14 0.29 3.09 16 19 C -0.15 -7.16 10.07 22.39 0.23 -6.94 16 20 C -0.12 -4.47 9.96 22.02 0.22 -4.25 16 21 C -0.16 -5.80 10.04 22.40 0.22 -5.57 16 22 C -0.11 -4.21 10.04 22.32 0.22 -3.99 16 23 C -0.02 -0.96 6.88 39.06 0.27 -0.69 16 24 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 25 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.05 1.10 6.57 -2.38 -0.02 1.09 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.06 1.85 6.56 -2.39 -0.02 1.84 16 30 H 0.06 1.98 7.60 -2.39 -0.02 1.96 16 31 H 0.03 1.19 5.95 -2.39 -0.01 1.18 16 32 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.08 2.86 7.26 -2.39 -0.02 2.85 16 34 H 0.28 14.27 8.29 -92.71 -0.77 13.50 16 35 H 0.10 4.71 8.06 -2.91 -0.02 4.68 16 36 H 0.14 4.22 8.06 -2.91 -0.02 4.19 16 37 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 38 H 0.12 4.10 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -68.91 308.46 5.01 -63.90 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 1.04 Total: 27.26 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: 4.78 Total: -23.24 kcal Atomic # 7 Polarization: -104.37 SS G_CDS: -2.85 Total: -107.22 kcal Atomic # 14 Polarization: 37.28 SS G_CDS: 2.03 Total: 39.31 kcal Total: -68.91 5.01 -63.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110950310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.140 kcal (2) G-P(sol) polarization free energy of solvation -68.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds