Wall clock time and date at job start Mon Mar 30 2020 06:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46884 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99248 * 2 1 3 5 5 C 1.53000 * 109.47060 * 300.00449 * 4 2 1 6 6 C 1.53002 * 109.47233 * 299.99657 * 5 4 2 7 7 C 1.52997 * 109.46817 * 60.00194 * 6 5 4 8 8 H 1.09002 * 109.47153 * 60.00231 * 7 6 5 9 9 S 1.81399 * 109.47065 * 180.02562 * 7 6 5 10 10 O 1.42105 * 109.46981 * 188.61141 * 9 7 6 11 11 C 1.81406 * 103.00023 * 304.99892 * 9 7 6 12 12 C 1.52995 * 109.46989 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.46729 * 180.02562 * 12 11 9 14 14 C 1.50711 * 109.46900 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99810 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99897 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99911 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00005 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47449 * 89.99564 * 18 16 14 20 20 H 1.48500 * 109.47415 * 209.99392 * 18 16 14 21 21 H 1.48507 * 109.47224 * 329.99722 * 18 16 14 22 22 C 1.52999 * 109.46623 * 119.99312 * 2 1 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00592 * 1 2 3 25 25 H 1.09001 * 109.47002 * 60.00326 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 27 27 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 28 28 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 29 29 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 30 30 H 1.08993 * 109.47662 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.47075 * 300.00932 * 6 5 4 32 32 H 1.09001 * 109.46694 * 300.00356 * 11 9 7 33 33 H 1.09005 * 109.46394 * 60.00156 * 11 9 7 34 34 H 1.09001 * 109.47112 * 299.99644 * 12 11 9 35 35 H 1.08996 * 109.47296 * 60.00194 * 12 11 9 36 36 H 1.09001 * 109.46755 * 299.99522 * 13 12 11 37 37 H 1.08999 * 109.47106 * 60.00330 * 13 12 11 38 38 H 0.96997 * 119.99694 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.47486 * 299.99829 * 22 2 1 40 40 H 1.09002 * 109.46716 * 179.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5300 -2.1639 -1.2490 6 6 2.0399 -2.8851 0.0003 7 6 1.5299 -2.1637 1.2495 8 1 0.4399 -2.1636 1.2494 9 16 2.1351 -3.0182 2.7307 10 8 1.5048 -2.4741 3.8822 11 6 1.5673 -4.7227 2.4791 12 6 2.0053 -5.5862 3.6637 13 6 1.5270 -7.0239 3.4511 14 6 1.9589 -7.8747 4.6177 15 1 2.5183 -7.4339 5.4296 16 6 1.6391 -9.2154 4.6489 17 7 2.0156 -9.9577 5.6671 18 14 0.6710 -9.9776 3.2449 19 1 1.6110 -10.4803 2.2110 20 1 -0.1457 -11.1051 3.7614 21 1 -0.2219 -8.9532 2.6459 22 6 2.0399 -0.7211 1.2494 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 3.1301 -0.7218 -1.2489 27 1 1.6767 -0.2076 -2.1392 28 1 0.4400 -2.1638 -1.2490 29 1 1.8937 -2.6779 -2.1387 30 1 1.6770 -3.9128 0.0003 31 1 3.1299 -2.8850 0.0004 32 1 0.4801 -4.7358 2.4026 33 1 2.0011 -5.1182 1.5606 34 1 3.0925 -5.5730 3.7405 35 1 1.5713 -5.1905 4.5819 36 1 0.4398 -7.0373 3.3740 37 1 1.9614 -7.4193 2.5330 38 1 1.7909 -10.9011 5.6888 39 1 1.6766 -0.2072 2.1393 40 1 3.1300 -0.7215 1.2491 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113362280.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:51 Heat of formation + Delta-G solvation = -78.965076 kcal Electronic energy + Delta-G solvation = -17484.672727 eV Core-core repulsion = 14810.493736 eV Total energy + Delta-G solvation = -2674.178991 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.14113 -35.45707 -34.56637 -32.33004 -31.97715 -31.04429 -28.12143 -26.97622 -23.59045 -22.67531 -22.34709 -20.18954 -18.88310 -17.42510 -16.66827 -16.23031 -15.31593 -14.83927 -14.65196 -14.57946 -14.11018 -13.88876 -13.84636 -13.25506 -12.84601 -12.69392 -12.38625 -12.12961 -12.03696 -11.81417 -11.58229 -11.36239 -11.26788 -11.15010 -10.95335 -10.82785 -10.46144 -10.24578 -10.21728 -9.90627 -9.75703 -9.25130 -9.13772 -8.53770 -7.96424 -6.03917 -4.02001 1.67287 2.82800 3.29506 3.37270 3.40945 3.96314 4.39458 4.44976 4.48450 4.64240 4.90634 4.99077 5.07839 5.13450 5.27660 5.29643 5.35677 5.40380 5.46656 5.51711 5.56598 5.60163 5.73522 5.78737 5.85763 5.89845 5.98873 6.05980 6.09308 6.13775 6.26603 6.39715 6.52857 6.85494 7.26760 7.40088 7.78870 8.54261 9.01382 9.58397 11.09654 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.035118 B = 0.004214 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.110886 B = 6643.098277 C = 7120.512923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.086 4.086 3 H 0.070 0.930 4 C -0.113 4.113 5 C -0.119 4.119 6 C -0.095 4.095 7 C -0.414 4.414 8 H 0.089 0.911 9 S 1.224 4.776 10 O -0.851 6.851 11 C -0.435 4.435 12 C -0.085 4.085 13 C -0.008 4.008 14 C -0.522 4.522 15 H 0.073 0.927 16 C 0.066 3.934 17 N -0.903 5.903 18 Si 0.880 3.120 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.267 1.267 22 C -0.088 4.088 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.013 0.987 37 H 0.014 0.986 38 H 0.263 0.737 39 H 0.064 0.936 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.432 18.963 -16.591 25.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.106 4.106 3 H 0.088 0.912 4 C -0.151 4.151 5 C -0.157 4.157 6 C -0.133 4.133 7 C -0.531 4.531 8 H 0.108 0.892 9 S 1.426 4.574 10 O -0.846 6.846 11 C -0.574 4.574 12 C -0.124 4.124 13 C -0.047 4.047 14 C -0.560 4.560 15 H 0.091 0.909 16 C -0.135 4.135 17 N -0.542 5.542 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.192 1.192 22 C -0.126 4.126 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.132 0.868 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.031 0.969 37 H 0.032 0.968 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.917 19.186 -15.716 24.972 hybrid contribution -2.976 -0.730 -0.866 3.184 sum -0.059 18.456 -16.582 24.811 Atomic orbital electron populations 1.21952 0.95642 1.02122 1.01264 1.21055 0.95815 0.98834 0.94900 0.91203 1.21556 1.00666 0.95715 0.97134 1.21556 1.00971 0.95597 0.97591 1.21275 1.01419 0.98528 0.92128 1.27576 1.07678 1.04569 1.13264 0.89217 1.70292 1.18037 0.86167 0.82925 1.93106 1.78086 1.74382 1.39052 1.27711 1.07669 1.15351 1.06622 1.21123 1.00767 0.96379 0.94114 1.19568 0.96170 0.91580 0.97355 1.21176 1.35733 0.93551 1.05571 0.90889 1.25030 0.95495 0.97223 0.95755 1.69916 1.46954 1.06852 1.30507 0.86774 0.80674 0.78947 0.82855 1.20175 1.21385 1.19198 1.21201 1.00821 0.92412 0.98188 0.92113 0.92987 0.92959 0.91661 0.92323 0.91991 0.91839 0.91125 0.90335 0.90243 0.86838 0.91548 0.92315 0.96857 0.96750 0.92734 0.91715 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.50 37.16 0.32 -1.03 16 2 C -0.09 -0.70 3.20 -90.62 -0.29 -0.99 16 3 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.11 -0.81 5.45 -26.73 -0.15 -0.95 16 5 C -0.12 -0.91 5.65 -26.73 -0.15 -1.07 16 6 C -0.10 -0.77 4.95 -26.73 -0.13 -0.91 16 7 C -0.41 -4.22 2.44 -26.73 -0.07 -4.29 16 8 H 0.09 1.05 6.43 -51.92 -0.33 0.72 16 9 S 1.22 15.59 12.66 -107.50 -1.36 14.23 16 10 O -0.85 -16.52 18.14 -35.23 -0.64 -17.16 16 11 C -0.43 -6.58 5.32 37.15 0.20 -6.39 16 12 C -0.09 -1.70 5.16 -26.73 -0.14 -1.83 16 13 C -0.01 -0.19 4.04 -27.88 -0.11 -0.31 16 14 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 15 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 16 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -28.21 13.96 55.43 0.77 -27.43 16 18 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 22 C -0.09 -0.80 4.74 -26.73 -0.13 -0.93 16 23 H 0.06 0.58 4.81 -51.93 -0.25 0.33 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.59 6.51 -51.93 -0.34 0.25 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 1.29 8.14 -51.92 -0.42 0.86 16 33 H 0.11 1.39 6.90 -51.92 -0.36 1.03 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 37 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 317.41 15.07 4.78 4.78 Total: -1.00 -35.85 317.41 -9.23 -45.08 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -7.04 Total: -4.43 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: -1.08 Total: -32.33 kcal Atomic # 7 Polarization: -28.21 SS G_CDS: 0.77 Total: -27.43 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.64 Total: -17.16 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Atomic # 16 Polarization: 15.59 SS G_CDS: -1.36 Total: 14.23 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.85 -9.23 -45.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113362280.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.885 kcal (2) G-P(sol) polarization free energy of solvation -35.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds