Wall clock time and date at job start Mon Mar 30 2020 06:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46884 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99248 * 2 1 3 5 5 C 1.53000 * 109.47060 * 300.00449 * 4 2 1 6 6 C 1.53002 * 109.47233 * 299.99657 * 5 4 2 7 7 C 1.52997 * 109.46817 * 60.00194 * 6 5 4 8 8 H 1.09002 * 109.47153 * 60.00231 * 7 6 5 9 9 S 1.81399 * 109.47065 * 180.02562 * 7 6 5 10 10 O 1.42105 * 109.46981 * 188.61141 * 9 7 6 11 11 C 1.81406 * 103.00023 * 304.99892 * 9 7 6 12 12 C 1.52995 * 109.46989 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.46729 * 180.02562 * 12 11 9 14 14 C 1.50711 * 109.46900 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99810 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99897 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99911 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00005 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47449 * 89.99564 * 18 16 14 20 20 H 1.48500 * 109.47415 * 209.99392 * 18 16 14 21 21 H 1.48507 * 109.47224 * 329.99722 * 18 16 14 22 22 C 1.52999 * 109.46623 * 119.99312 * 2 1 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00592 * 1 2 3 25 25 H 1.09001 * 109.47002 * 60.00326 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 27 27 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 28 28 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 29 29 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 30 30 H 1.08993 * 109.47662 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.47075 * 300.00932 * 6 5 4 32 32 H 1.09001 * 109.46694 * 300.00356 * 11 9 7 33 33 H 1.09005 * 109.46394 * 60.00156 * 11 9 7 34 34 H 1.09001 * 109.47112 * 299.99644 * 12 11 9 35 35 H 1.08996 * 109.47296 * 60.00194 * 12 11 9 36 36 H 1.09001 * 109.46755 * 299.99522 * 13 12 11 37 37 H 1.08999 * 109.47106 * 60.00330 * 13 12 11 38 38 H 0.96997 * 119.99694 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.47486 * 299.99829 * 22 2 1 40 40 H 1.09002 * 109.46716 * 179.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5300 -2.1639 -1.2490 6 6 2.0399 -2.8851 0.0003 7 6 1.5299 -2.1637 1.2495 8 1 0.4399 -2.1636 1.2494 9 16 2.1351 -3.0182 2.7307 10 8 1.5048 -2.4741 3.8822 11 6 1.5673 -4.7227 2.4791 12 6 2.0053 -5.5862 3.6637 13 6 1.5270 -7.0239 3.4511 14 6 1.9589 -7.8747 4.6177 15 1 2.5183 -7.4339 5.4296 16 6 1.6391 -9.2154 4.6489 17 7 2.0156 -9.9577 5.6671 18 14 0.6710 -9.9776 3.2449 19 1 1.6110 -10.4803 2.2110 20 1 -0.1457 -11.1051 3.7614 21 1 -0.2219 -8.9532 2.6459 22 6 2.0399 -0.7211 1.2494 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 3.1301 -0.7218 -1.2489 27 1 1.6767 -0.2076 -2.1392 28 1 0.4400 -2.1638 -1.2490 29 1 1.8937 -2.6779 -2.1387 30 1 1.6770 -3.9128 0.0003 31 1 3.1299 -2.8850 0.0004 32 1 0.4801 -4.7358 2.4026 33 1 2.0011 -5.1182 1.5606 34 1 3.0925 -5.5730 3.7405 35 1 1.5713 -5.1905 4.5819 36 1 0.4398 -7.0373 3.3740 37 1 1.9614 -7.4193 2.5330 38 1 1.7909 -10.9011 5.6888 39 1 1.6766 -0.2072 2.1393 40 1 3.1300 -0.7215 1.2491 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113362280.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:48 Heat of formation + Delta-G solvation = -102.906671 kcal Electronic energy + Delta-G solvation = -17485.710913 eV Core-core repulsion = 14810.493736 eV Total energy + Delta-G solvation = -2675.217177 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.80015 -36.81035 -36.36101 -34.17474 -32.90276 -31.71492 -29.92344 -27.69400 -25.19940 -23.62200 -23.03945 -21.92705 -19.55443 -18.99041 -18.35258 -17.15807 -16.44606 -16.35677 -15.87188 -15.48096 -15.36402 -14.97562 -14.69005 -14.65205 -14.24146 -13.90665 -13.66836 -13.38618 -13.14068 -12.83627 -12.73096 -12.60448 -12.35051 -12.20228 -12.02422 -11.90420 -11.81157 -11.56509 -11.52803 -11.35687 -11.05905 -10.87298 -10.77453 -10.43618 -9.11658 -8.30627 -6.35582 0.60051 1.34076 1.37526 1.48977 1.77319 2.35319 2.87020 3.04397 3.69660 3.78922 3.99077 4.03951 4.13916 4.22563 4.32771 4.43480 4.51143 4.55781 4.62157 4.70258 4.78988 4.81853 4.92641 4.96425 4.99288 5.06369 5.09803 5.19908 5.24150 5.28858 5.41152 5.44368 5.47635 5.49244 5.53115 5.64690 5.65713 6.26738 6.72540 7.29151 8.86535 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.035118 B = 0.004214 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.110886 B = 6643.098277 C = 7120.512923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.085 4.085 3 H 0.081 0.919 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.100 4.100 7 C -0.398 4.398 8 H 0.072 0.928 9 S 1.271 4.729 10 O -0.924 6.924 11 C -0.434 4.434 12 C -0.085 4.085 13 C -0.007 4.007 14 C -0.540 4.540 15 H 0.030 0.970 16 C 0.002 3.998 17 N -0.952 5.952 18 Si 0.955 3.045 19 H -0.254 1.254 20 H -0.286 1.286 21 H -0.252 1.252 22 C -0.094 4.094 23 H 0.050 0.950 24 H 0.038 0.962 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.153 0.847 34 H 0.082 0.918 35 H 0.024 0.976 36 H 0.007 0.993 37 H 0.038 0.962 38 H 0.267 0.733 39 H 0.042 0.958 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.977 19.497 -20.477 28.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.105 4.105 3 H 0.099 0.901 4 C -0.148 4.148 5 C -0.158 4.158 6 C -0.138 4.138 7 C -0.517 4.517 8 H 0.091 0.909 9 S 1.476 4.524 10 O -0.919 6.919 11 C -0.572 4.572 12 C -0.124 4.124 13 C -0.046 4.046 14 C -0.578 4.578 15 H 0.048 0.952 16 C -0.195 4.195 17 N -0.593 5.593 18 Si 0.778 3.222 19 H -0.179 1.179 20 H -0.212 1.212 21 H -0.176 1.176 22 C -0.132 4.132 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.127 0.873 32 H 0.086 0.914 33 H 0.171 0.829 34 H 0.101 0.899 35 H 0.043 0.957 36 H 0.025 0.975 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.472 19.715 -19.576 27.999 hybrid contribution -3.124 -0.803 0.359 3.246 sum 0.348 18.912 -19.217 26.964 Atomic orbital electron populations 1.21982 0.96661 1.01445 1.01186 1.21076 0.94971 0.99548 0.94857 0.90070 1.21565 1.01639 0.95098 0.96517 1.21572 1.00345 0.96127 0.97759 1.21435 1.03344 0.98286 0.90755 1.27419 1.06764 1.05297 1.12240 0.90920 1.69404 1.16681 0.84218 0.82141 1.92989 1.79501 1.75757 1.43680 1.27673 1.07144 1.16317 1.06031 1.20992 1.01623 0.94881 0.94911 1.19545 0.95769 0.93244 0.96040 1.21570 1.35351 0.94599 1.06271 0.95205 1.26086 0.96673 0.97784 0.98959 1.70081 1.48676 1.07447 1.33099 0.85588 0.79368 0.78018 0.79227 1.17880 1.21205 1.17618 1.21323 1.02578 0.91288 0.98053 0.93101 0.94298 0.91844 0.90004 0.91589 0.93206 0.90304 0.90833 0.87341 0.91434 0.82873 0.89915 0.95709 0.97497 0.94382 0.92436 0.93933 0.87933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 8.50 71.98 0.61 -1.95 16 2 C -0.08 -1.16 3.20 -10.79 -0.03 -1.19 16 3 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.11 -1.14 5.45 30.59 0.17 -0.98 16 5 C -0.12 -1.39 5.65 30.60 0.17 -1.22 16 6 C -0.10 -1.23 4.95 30.59 0.15 -1.08 16 7 C -0.40 -7.32 2.44 30.60 0.07 -7.24 16 8 H 0.07 1.64 6.43 -2.39 -0.02 1.62 16 9 S 1.27 31.16 12.66 -56.49 -0.72 30.44 16 10 O -0.92 -36.89 18.14 -148.98 -2.70 -39.59 16 11 C -0.43 -12.41 5.32 71.98 0.38 -12.03 16 12 C -0.09 -3.41 5.16 30.59 0.16 -3.25 16 13 C -0.01 -0.35 4.04 29.85 0.12 -0.23 16 14 C -0.54 -32.14 9.66 25.60 0.25 -31.89 16 15 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 16 C 0.00 0.09 5.47 84.65 0.46 0.55 16 17 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16 18 Si 0.96 44.62 27.47 68.60 1.88 46.50 16 19 H -0.25 -10.98 7.11 99.48 0.71 -10.27 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 21 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 22 C -0.09 -1.52 4.74 30.60 0.14 -1.38 16 23 H 0.05 0.93 4.81 -2.39 -0.01 0.92 16 24 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.05 0.71 6.43 -2.39 -0.02 0.69 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.90 6.51 -2.39 -0.02 0.89 16 31 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.15 3.12 6.90 -2.39 -0.02 3.10 16 34 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 35 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.01 0.33 7.20 -2.39 -0.02 0.31 16 37 H 0.04 1.63 7.57 -2.39 -0.02 1.62 16 38 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 39 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -81.41 317.41 2.35 -79.06 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: 0.93 Total: 6.14 kcal Atomic # 6 Polarization: -64.54 SS G_CDS: 2.66 Total: -61.88 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.30 Total: -60.66 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -2.70 Total: -39.59 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.88 Total: 46.50 kcal Atomic # 16 Polarization: 31.16 SS G_CDS: -0.72 Total: 30.44 kcal Total: -81.41 2.35 -79.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113362280.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.850 kcal (2) G-P(sol) polarization free energy of solvation -81.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds