Wall clock time and date at job start Mon Mar 30 2020 07:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86800 * 119.99693 * 2 1 4 4 H 1.48504 * 109.47083 * 89.99636 * 3 2 1 5 5 H 1.48504 * 109.47128 * 209.99691 * 3 2 1 6 6 H 1.48499 * 109.47336 * 329.99771 * 3 2 1 7 7 C 1.39885 * 120.00480 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00597 * 164.83551 * 7 2 1 9 9 C 1.41036 * 119.99620 * 344.83836 * 7 2 1 10 10 C 1.40660 * 120.26702 * 334.25606 * 9 7 2 11 11 C 1.38009 * 119.76707 * 179.74117 * 10 9 7 12 12 N 1.39855 * 119.83960 * 180.23011 * 11 10 9 13 13 C 1.46503 * 120.00207 * 180.27979 * 12 11 10 14 14 H 1.08992 * 109.64114 * 325.42525 * 13 12 11 15 15 C 1.53022 * 109.63659 * 86.05958 * 13 12 11 16 16 C 1.50071 * 110.14606 * 169.11963 * 15 13 12 17 17 C 1.29446 * 124.07514 * 342.87297 * 16 15 13 18 18 C 1.50066 * 124.07391 * 0.46364 * 17 16 15 19 19 C 1.53018 * 110.15020 * 342.87304 * 18 17 16 20 20 C 1.39591 * 120.32137 * 0.51955 * 11 10 9 21 21 C 1.38060 * 120.55075 * 359.75746 * 20 11 10 22 22 C 1.38728 * 120.21951 * 359.97438 * 21 20 11 23 23 N 1.38867 * 120.16893 * 179.97438 * 22 21 20 24 24 H 0.96996 * 120.00645 * 0.02562 * 1 2 3 25 25 H 1.08005 * 120.11817 * 359.97438 * 10 9 7 26 26 H 0.97004 * 120.00177 * 0.28935 * 12 11 10 27 27 H 1.08996 * 109.36125 * 289.32867 * 15 13 12 28 28 H 1.09003 * 109.36286 * 48.92012 * 15 13 12 29 29 H 1.08004 * 117.96475 * 162.84474 * 16 15 13 30 30 H 1.08002 * 117.96088 * 180.44375 * 17 16 15 31 31 H 1.09000 * 109.35493 * 222.66187 * 18 17 16 32 32 H 1.09002 * 109.24578 * 103.00819 * 18 17 16 33 33 H 1.09007 * 109.64252 * 289.74942 * 19 18 17 34 34 H 1.08992 * 109.64739 * 169.12252 * 19 18 17 35 35 H 1.08005 * 119.72930 * 179.73574 * 20 11 10 36 36 H 1.07996 * 119.89049 * 179.97438 * 21 20 11 37 37 H 0.96998 * 120.00492 * 180.02562 * 23 22 21 38 38 H 0.97002 * 119.98918 * 0.02672 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4903 2.0465 1.4001 5 1 3.5405 1.4403 -0.7000 6 1 1.4404 2.6527 -0.7001 7 6 2.0085 -1.2114 0.0005 8 1 3.0603 -1.2278 -0.2441 9 6 1.3402 -2.4114 0.3205 10 6 0.1925 -2.3887 1.1335 11 6 -0.4565 -3.5685 1.4358 12 7 -1.6005 -3.5472 2.2400 13 6 -2.2887 -4.7982 2.5681 14 1 -2.2243 -5.4841 1.7236 15 6 -1.6427 -5.4322 3.8019 16 6 -2.4912 -6.5625 4.3064 17 6 -3.7320 -6.7387 3.9823 18 6 -4.4925 -5.8428 3.0490 19 6 -3.7611 -4.5086 2.8861 20 6 0.0268 -4.7837 0.9477 21 6 1.1554 -4.8220 0.1534 22 6 1.8223 -3.6491 -0.1691 23 7 2.9577 -3.6888 -0.9677 24 1 -0.4851 0.8400 -0.0004 25 1 -0.1817 -1.4508 1.5168 26 1 -1.9384 -2.7040 2.5804 27 1 -0.6554 -5.8113 3.5383 28 1 -1.5416 -4.6796 4.5839 29 1 -2.0383 -7.2735 4.9816 30 1 -4.2521 -7.5830 4.4100 31 1 -5.4884 -5.6619 3.4533 32 1 -4.5799 -6.3280 2.0768 33 1 -3.8306 -3.9373 3.8118 34 1 -4.2082 -3.9431 2.0686 35 1 -0.4862 -5.7018 1.1937 36 1 1.5202 -5.7681 -0.2182 37 1 3.4224 -2.8673 -1.1914 38 1 3.2860 -4.5382 -1.3018 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127445292.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:22 Heat of formation + Delta-G solvation = 28.553331 kcal Electronic energy + Delta-G solvation = -18787.219827 eV Core-core repulsion = 16014.551983 eV Total energy + Delta-G solvation = -2772.667844 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -38.82108 -37.48241 -34.69215 -33.43072 -31.84209 -30.62652 -29.41796 -28.91892 -25.82953 -24.78226 -22.93235 -21.94833 -20.74941 -19.56771 -17.74389 -17.06169 -16.26039 -15.69910 -15.44904 -14.91921 -14.60037 -14.50358 -13.46167 -13.34342 -13.18804 -12.59498 -12.40488 -12.34176 -12.04303 -11.88486 -11.76743 -11.36676 -11.18447 -11.00852 -10.68439 -10.55152 -10.40394 -10.25763 -9.78419 -9.64945 -9.26898 -9.04094 -8.86807 -7.72537 -7.19565 -6.58423 -5.50285 -4.04333 2.38934 2.92948 3.14785 3.17180 3.33588 3.51248 4.04982 4.38648 4.83065 4.92036 4.97816 5.19907 5.44421 5.45163 5.53539 5.67247 5.75697 5.83290 5.92930 5.95474 6.09420 6.24564 6.39330 6.42166 6.52230 6.70087 6.75651 7.06201 7.15399 7.19439 7.35506 7.52283 7.74500 7.91994 8.04115 8.16078 8.49055 8.79326 8.94072 8.97726 9.03300 9.28850 9.37249 10.40088 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.026146 B = 0.005251 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.654470 B = 5330.787984 C = 6092.132109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.076 3.924 3 Si 0.902 3.098 4 H -0.271 1.271 5 H -0.266 1.266 6 H -0.281 1.281 7 C -0.464 4.464 8 H 0.070 0.930 9 C 0.094 3.906 10 C -0.201 4.201 11 C 0.178 3.822 12 N -0.758 5.758 13 C 0.166 3.834 14 H 0.074 0.926 15 C -0.110 4.110 16 C -0.143 4.143 17 C -0.169 4.169 18 C -0.085 4.085 19 C -0.128 4.128 20 C -0.255 4.255 21 C -0.153 4.153 22 C 0.084 3.916 23 N -0.889 5.889 24 H 0.274 0.726 25 H 0.119 0.881 26 H 0.387 0.613 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.388 0.612 38 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.273 -6.990 5.219 10.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.190 1.190 6 H -0.206 1.206 7 C -0.495 4.495 8 H 0.089 0.911 9 C 0.089 3.911 10 C -0.226 4.226 11 C 0.080 3.920 12 N -0.391 5.391 13 C 0.058 3.942 14 H 0.092 0.908 15 C -0.148 4.148 16 C -0.161 4.161 17 C -0.187 4.187 18 C -0.122 4.122 19 C -0.166 4.166 20 C -0.279 4.279 21 C -0.177 4.177 22 C -0.017 4.017 23 N -0.432 5.432 24 H 0.085 0.915 25 H 0.137 0.863 26 H 0.220 0.780 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.216 0.784 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -5.571 -6.980 5.240 10.354 hybrid contribution 0.508 0.936 -0.041 1.066 sum -5.063 -6.044 5.199 9.443 Atomic orbital electron populations 1.69874 1.07217 1.28278 1.37482 1.25739 0.94671 1.00637 0.92906 0.86423 0.80365 0.81436 0.79001 1.19644 1.18984 1.20638 1.19145 0.96551 0.91052 1.42744 0.91146 1.16975 0.92691 0.90246 0.91164 1.20538 1.00960 0.95206 1.05851 1.17517 0.87381 0.94086 0.93019 1.44395 1.30199 1.06115 1.58365 1.20584 0.89979 0.87881 0.95706 0.90812 1.21048 0.99215 0.96065 0.98510 1.22141 0.95399 0.98750 0.99829 1.22002 0.96018 1.00233 1.00464 1.20383 0.98280 0.94749 0.98821 1.21885 0.95716 0.97086 1.01904 1.19646 1.02184 0.94557 1.11535 1.19704 0.98682 0.94564 1.04764 1.17865 0.91586 0.93924 0.98341 1.41809 1.31724 1.09096 1.60567 0.91504 0.86329 0.78006 0.90563 0.90933 0.88393 0.88397 0.91301 0.90946 0.91820 0.91174 0.89601 0.89865 0.78369 0.80146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.09 10.88 55.54 0.60 -20.48 16 2 C 0.08 1.93 5.18 -17.33 -0.09 1.84 16 3 Si 0.90 19.08 29.59 -169.99 -5.03 14.05 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 6 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.46 -12.27 8.50 -37.91 -0.32 -12.59 16 8 H 0.07 1.78 6.67 -52.49 -0.35 1.43 16 9 C 0.09 2.53 5.58 -106.65 -0.60 1.93 16 10 C -0.20 -5.25 8.50 -38.75 -0.33 -5.58 16 11 C 0.18 4.16 6.64 -83.78 -0.56 3.61 16 12 N -0.76 -14.58 5.26 -51.97 -0.27 -14.86 16 13 C 0.17 2.65 2.19 -67.71 -0.15 2.50 16 14 H 0.07 1.29 6.44 -51.93 -0.33 0.95 16 15 C -0.11 -1.63 5.70 -28.18 -0.16 -1.79 16 16 C -0.14 -1.80 9.80 -35.90 -0.35 -2.15 16 17 C -0.17 -1.95 9.80 -35.90 -0.35 -2.31 16 18 C -0.08 -0.96 6.12 -28.18 -0.17 -1.13 16 19 C -0.13 -1.69 5.50 -26.52 -0.15 -1.83 16 20 C -0.26 -5.84 9.06 -39.14 -0.35 -6.19 16 21 C -0.15 -3.54 9.86 -39.47 -0.39 -3.93 16 22 C 0.08 2.05 6.79 -83.23 -0.56 1.48 16 23 N -0.89 -18.44 8.98 32.75 0.29 -18.14 16 24 H 0.27 6.65 8.30 -40.82 -0.34 6.31 16 25 H 0.12 3.22 6.15 -52.48 -0.32 2.89 16 26 H 0.39 7.17 8.62 -40.82 -0.35 6.82 16 27 H 0.08 1.24 7.83 -51.93 -0.41 0.84 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.10 1.10 8.06 -52.48 -0.42 0.67 16 30 H 0.10 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.81 8.13 -51.92 -0.42 0.39 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.80 6.02 -52.48 -0.32 1.49 16 36 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.39 7.90 7.04 -40.82 -0.29 7.62 16 38 H 0.37 6.57 8.83 -40.82 -0.36 6.21 16 LS Contribution 306.01 15.07 4.61 4.61 Total: -1.00 -28.02 306.01 -9.57 -37.59 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: -5.24 Total: 23.37 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: -4.53 Total: -26.14 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.62 Total: -53.48 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.02 -9.57 -37.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127445292.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.144 kcal (2) G-P(sol) polarization free energy of solvation -28.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds