Wall clock time and date at job start Mon Mar 30 2020 07:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86800 * 119.99693 * 2 1 4 4 H 1.48504 * 109.47083 * 89.99636 * 3 2 1 5 5 H 1.48504 * 109.47128 * 209.99691 * 3 2 1 6 6 H 1.48499 * 109.47336 * 329.99771 * 3 2 1 7 7 C 1.39885 * 120.00480 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00597 * 164.83551 * 7 2 1 9 9 C 1.41036 * 119.99620 * 344.83836 * 7 2 1 10 10 C 1.40660 * 120.26702 * 334.25606 * 9 7 2 11 11 C 1.38009 * 119.76707 * 179.74117 * 10 9 7 12 12 N 1.39855 * 119.83960 * 180.23011 * 11 10 9 13 13 C 1.46503 * 120.00207 * 180.27979 * 12 11 10 14 14 H 1.08992 * 109.64114 * 325.42525 * 13 12 11 15 15 C 1.53022 * 109.63659 * 86.05958 * 13 12 11 16 16 C 1.50071 * 110.14606 * 169.11963 * 15 13 12 17 17 C 1.29446 * 124.07514 * 342.87297 * 16 15 13 18 18 C 1.50066 * 124.07391 * 0.46364 * 17 16 15 19 19 C 1.53018 * 110.15020 * 342.87304 * 18 17 16 20 20 C 1.39591 * 120.32137 * 0.51955 * 11 10 9 21 21 C 1.38060 * 120.55075 * 359.75746 * 20 11 10 22 22 C 1.38728 * 120.21951 * 359.97438 * 21 20 11 23 23 N 1.38867 * 120.16893 * 179.97438 * 22 21 20 24 24 H 0.96996 * 120.00645 * 0.02562 * 1 2 3 25 25 H 1.08005 * 120.11817 * 359.97438 * 10 9 7 26 26 H 0.97004 * 120.00177 * 0.28935 * 12 11 10 27 27 H 1.08996 * 109.36125 * 289.32867 * 15 13 12 28 28 H 1.09003 * 109.36286 * 48.92012 * 15 13 12 29 29 H 1.08004 * 117.96475 * 162.84474 * 16 15 13 30 30 H 1.08002 * 117.96088 * 180.44375 * 17 16 15 31 31 H 1.09000 * 109.35493 * 222.66187 * 18 17 16 32 32 H 1.09002 * 109.24578 * 103.00819 * 18 17 16 33 33 H 1.09007 * 109.64252 * 289.74942 * 19 18 17 34 34 H 1.08992 * 109.64739 * 169.12252 * 19 18 17 35 35 H 1.08005 * 119.72930 * 179.73574 * 20 11 10 36 36 H 1.07996 * 119.89049 * 179.97438 * 21 20 11 37 37 H 0.96998 * 120.00492 * 180.02562 * 23 22 21 38 38 H 0.97002 * 119.98918 * 0.02672 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4903 2.0465 1.4001 5 1 3.5405 1.4403 -0.7000 6 1 1.4404 2.6527 -0.7001 7 6 2.0085 -1.2114 0.0005 8 1 3.0603 -1.2278 -0.2441 9 6 1.3402 -2.4114 0.3205 10 6 0.1925 -2.3887 1.1335 11 6 -0.4565 -3.5685 1.4358 12 7 -1.6005 -3.5472 2.2400 13 6 -2.2887 -4.7982 2.5681 14 1 -2.2243 -5.4841 1.7236 15 6 -1.6427 -5.4322 3.8019 16 6 -2.4912 -6.5625 4.3064 17 6 -3.7320 -6.7387 3.9823 18 6 -4.4925 -5.8428 3.0490 19 6 -3.7611 -4.5086 2.8861 20 6 0.0268 -4.7837 0.9477 21 6 1.1554 -4.8220 0.1534 22 6 1.8223 -3.6491 -0.1691 23 7 2.9577 -3.6888 -0.9677 24 1 -0.4851 0.8400 -0.0004 25 1 -0.1817 -1.4508 1.5168 26 1 -1.9384 -2.7040 2.5804 27 1 -0.6554 -5.8113 3.5383 28 1 -1.5416 -4.6796 4.5839 29 1 -2.0383 -7.2735 4.9816 30 1 -4.2521 -7.5830 4.4100 31 1 -5.4884 -5.6619 3.4533 32 1 -4.5799 -6.3280 2.0768 33 1 -3.8306 -3.9373 3.8118 34 1 -4.2082 -3.9431 2.0686 35 1 -0.4862 -5.7018 1.1937 36 1 1.5202 -5.7681 -0.2182 37 1 3.4224 -2.8673 -1.1914 38 1 3.2860 -4.5382 -1.3018 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127445292.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:14 Heat of formation + Delta-G solvation = 12.580371 kcal Electronic energy + Delta-G solvation = -18787.912466 eV Core-core repulsion = 16014.551983 eV Total energy + Delta-G solvation = -2773.360483 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.21434 -39.07448 -36.24255 -35.31651 -33.39358 -31.67699 -31.28689 -30.36160 -27.55975 -26.59965 -24.01655 -23.49617 -22.36206 -21.33166 -18.98228 -18.76909 -17.76614 -17.29247 -16.99618 -16.58914 -16.31660 -15.79412 -14.83149 -14.62063 -14.41719 -14.25307 -13.95590 -13.75571 -13.64557 -13.28240 -13.14538 -13.10786 -12.87226 -12.72222 -12.14402 -12.01745 -11.87423 -11.64188 -11.37937 -11.10224 -11.07125 -10.93316 -9.83954 -9.37798 -9.13258 -8.48343 -7.28539 -5.99676 1.13147 1.41460 1.45262 1.52303 1.52835 1.67193 2.27713 2.90369 2.96024 3.78075 3.86993 3.90800 4.00237 4.10790 4.39495 4.49198 4.54325 4.59684 4.67864 4.78917 4.86025 5.00370 5.03596 5.14424 5.24496 5.27422 5.35668 5.40214 5.47809 5.69200 5.79552 5.91800 6.07951 6.10018 6.19303 6.30673 6.58503 6.98477 7.08063 7.15239 7.29315 7.49083 7.67787 8.52167 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.026146 B = 0.005251 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.654470 B = 5330.787984 C = 6092.132109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.033 3.967 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.258 1.258 6 H -0.275 1.275 7 C -0.492 4.492 8 H 0.074 0.926 9 C 0.060 3.940 10 C -0.227 4.227 11 C 0.177 3.823 12 N -0.755 5.755 13 C 0.162 3.838 14 H 0.061 0.939 15 C -0.102 4.102 16 C -0.161 4.161 17 C -0.157 4.157 18 C -0.085 4.085 19 C -0.122 4.122 20 C -0.258 4.258 21 C -0.158 4.158 22 C 0.068 3.932 23 N -0.879 5.879 24 H 0.279 0.721 25 H 0.099 0.901 26 H 0.388 0.612 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.390 0.610 38 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.976 -7.978 5.659 11.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.179 4.179 3 Si 0.797 3.203 4 H -0.194 1.194 5 H -0.182 1.182 6 H -0.200 1.200 7 C -0.523 4.523 8 H 0.092 0.908 9 C 0.055 3.945 10 C -0.252 4.252 11 C 0.077 3.923 12 N -0.387 5.387 13 C 0.056 3.944 14 H 0.079 0.921 15 C -0.141 4.141 16 C -0.179 4.179 17 C -0.175 4.175 18 C -0.122 4.122 19 C -0.160 4.160 20 C -0.281 4.281 21 C -0.182 4.182 22 C -0.034 4.034 23 N -0.423 5.423 24 H 0.089 0.911 25 H 0.117 0.883 26 H 0.221 0.779 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.131 0.869 30 H 0.142 0.858 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.218 0.782 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -6.280 -8.005 5.683 11.654 hybrid contribution 0.649 1.141 -0.165 1.323 sum -5.631 -6.864 5.518 10.453 Atomic orbital electron populations 1.69960 1.08681 1.29344 1.38221 1.26561 0.95426 1.03863 0.92097 0.85313 0.79122 0.76864 0.78972 1.19419 1.18187 1.19973 1.19408 0.96878 0.91969 1.44074 0.90824 1.17369 0.93528 0.91531 0.92066 1.20512 1.02016 0.95401 1.07231 1.17605 0.88193 0.93518 0.93017 1.44503 1.29174 1.07600 1.57410 1.20768 0.91718 0.86171 0.95718 0.92119 1.20888 0.98731 0.96811 0.97690 1.22095 0.95818 0.98677 1.01345 1.22261 0.95544 1.00413 0.99246 1.20452 0.99109 0.93328 0.99358 1.21844 0.93640 0.98613 1.01947 1.19918 1.02198 0.95008 1.11026 1.20044 0.98518 0.95288 1.04392 1.18034 0.92732 0.93681 0.98952 1.41677 1.30676 1.10112 1.59854 0.91094 0.88309 0.77877 0.92544 0.91583 0.86895 0.85817 0.88841 0.90440 0.91287 0.91572 0.87755 0.87271 0.78233 0.78235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.18 10.88 21.82 0.24 -44.95 16 2 C 0.03 1.71 5.18 85.23 0.44 2.15 16 3 Si 0.97 39.60 29.59 68.60 2.03 41.63 16 4 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 5 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 6 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.49 -26.68 8.50 23.36 0.20 -26.48 16 8 H 0.07 3.78 6.67 -2.91 -0.02 3.76 16 9 C 0.06 3.31 5.58 -21.18 -0.12 3.19 16 10 C -0.23 -12.30 8.50 22.81 0.19 -12.10 16 11 C 0.18 8.43 6.64 38.13 0.25 8.69 16 12 N -0.75 -29.49 5.26 -318.32 -1.68 -31.17 16 13 C 0.16 5.10 2.19 45.13 0.10 5.20 16 14 H 0.06 2.08 6.44 -2.39 -0.02 2.06 16 15 C -0.10 -2.99 5.70 29.66 0.17 -2.82 16 16 C -0.16 -3.71 9.80 27.04 0.27 -3.45 16 17 C -0.16 -3.11 9.80 27.03 0.27 -2.85 16 18 C -0.09 -1.67 6.12 29.66 0.18 -1.49 16 19 C -0.12 -3.04 5.50 30.73 0.17 -2.87 16 20 C -0.26 -11.74 9.06 22.55 0.20 -11.54 16 21 C -0.16 -7.24 9.86 22.34 0.22 -7.02 16 22 C 0.07 3.35 6.79 38.97 0.26 3.61 16 23 N -0.88 -36.09 8.98 -50.31 -0.45 -36.54 16 24 H 0.28 13.85 8.30 -92.71 -0.77 13.08 16 25 H 0.10 5.65 6.15 -2.91 -0.02 5.63 16 26 H 0.39 14.77 8.62 -92.71 -0.80 13.97 16 27 H 0.06 1.84 7.83 -2.39 -0.02 1.82 16 28 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.11 2.27 8.06 -2.91 -0.02 2.24 16 30 H 0.12 1.89 8.06 -2.91 -0.02 1.86 16 31 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 1.65 8.13 -2.38 -0.02 1.63 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.10 4.29 6.02 -2.91 -0.02 4.28 16 36 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 37 H 0.39 15.83 7.04 -92.71 -0.65 15.17 16 38 H 0.39 13.22 8.83 -92.71 -0.82 12.40 16 Total: -1.00 -61.27 306.01 1.77 -59.50 By element: Atomic # 1 Polarization: 60.47 SS G_CDS: -1.18 Total: 59.29 kcal Atomic # 6 Polarization: -50.58 SS G_CDS: 2.81 Total: -47.78 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -1.89 Total: -112.65 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -61.27 1.77 -59.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127445292.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.084 kcal (2) G-P(sol) polarization free energy of solvation -61.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds