Wall clock time and date at job start Mon Mar 30 2020 07:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47214 * 2 1 4 4 C 1.38308 * 119.95848 * 270.01867 * 3 2 1 5 5 C 1.38271 * 120.14509 * 179.97438 * 4 3 2 6 6 C 1.38129 * 120.06996 * 359.71881 * 5 4 3 7 7 C 1.38873 * 119.92834 * 0.55700 * 6 5 4 8 8 N 1.39848 * 120.07412 * 179.72149 * 7 6 5 9 9 C 1.35498 * 119.99867 * 179.72676 * 8 7 6 10 10 N 5.48774 * 100.66460 * 57.82295 * 2 1 3 11 11 C 1.46499 * 119.99822 * 359.72218 * 8 7 6 12 12 C 1.53000 * 109.46840 * 90.00460 * 11 8 7 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 8 14 14 C 1.50697 * 109.47291 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00162 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99868 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47023 * 90.00014 * 18 16 14 20 20 H 1.48496 * 109.47251 * 210.00457 * 18 16 14 21 21 H 1.48498 * 109.47139 * 330.00202 * 18 16 14 22 22 C 1.38083 * 119.97131 * 89.99606 * 3 2 1 23 23 H 1.09010 * 109.46641 * 60.00682 * 1 2 3 24 24 H 1.08990 * 109.47219 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47309 * 300.00844 * 1 2 3 26 26 H 1.08994 * 109.47263 * 239.99622 * 2 1 3 27 27 H 1.08999 * 109.47004 * 119.99011 * 2 1 3 28 28 H 1.07996 * 119.93090 * 359.95258 * 4 3 2 29 29 H 1.08002 * 119.96575 * 179.97438 * 5 4 3 30 30 H 1.07996 * 120.03563 * 180.30107 * 6 5 4 31 31 H 1.09002 * 109.47391 * 330.00130 * 11 8 7 32 32 H 1.09001 * 109.46813 * 210.00186 * 11 8 7 33 33 H 1.09001 * 109.47194 * 299.99493 * 12 11 8 34 34 H 1.08992 * 109.47399 * 59.99666 * 12 11 8 35 35 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 36 36 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 37 37 H 0.96996 * 119.99309 * 179.97438 * 17 16 14 38 38 H 1.08002 * 120.03240 * 0.04137 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0721 -1.1983 5 6 2.7226 3.3759 -1.2028 6 6 2.9490 4.0341 -0.0097 7 6 2.7247 3.3811 1.1952 8 7 2.9584 4.0426 2.4050 9 6 2.7337 3.4059 3.5797 10 7 2.5456 2.8719 4.5646 11 6 3.4462 5.4240 2.4021 12 6 2.2558 6.3852 2.4013 13 6 2.7652 7.8279 2.3976 14 6 1.5928 8.7747 2.3962 15 1 0.5850 8.3862 2.3973 16 6 1.8065 10.1367 2.3934 17 7 0.7833 10.9630 2.3916 18 14 3.5495 10.8086 2.3921 19 1 4.0114 10.9838 0.9916 20 1 3.5753 12.1194 3.0895 21 1 4.4475 9.8567 3.0941 22 6 2.2622 2.0712 1.1962 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 2.0821 1.5612 -2.1325 29 1 2.9016 3.8816 -2.1402 30 1 3.3039 5.0540 -0.0139 31 1 4.0510 5.5939 1.5113 32 1 4.0524 5.5971 3.2913 33 1 1.6496 6.2121 1.5120 34 1 1.6510 6.2153 3.2919 35 1 3.3716 8.0014 3.2866 36 1 3.3698 7.9975 1.5066 37 1 0.9338 11.9212 2.3901 38 1 2.0828 1.5619 2.1315 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160449346.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:41 Heat of formation + Delta-G solvation = 44.769613 kcal Electronic energy + Delta-G solvation = -18130.067254 eV Core-core repulsion = 15358.102601 eV Total energy + Delta-G solvation = -2771.964653 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.19374 -37.76531 -35.54697 -34.20408 -33.47984 -31.90190 -30.10813 -29.19746 -27.27660 -24.27255 -23.16621 -23.09922 -20.86417 -20.35132 -18.77162 -17.21869 -16.66638 -15.85057 -15.26243 -14.95932 -14.75170 -14.27612 -14.17475 -13.81786 -13.64130 -13.32745 -13.16560 -12.81597 -12.45552 -12.31015 -12.21224 -11.99283 -11.71900 -11.65868 -11.31905 -11.12811 -10.91930 -10.84779 -10.33514 -10.09031 -9.86795 -9.67213 -9.27981 -8.85245 -8.59477 -7.74228 -6.09122 -4.08336 1.29520 1.32305 2.29085 2.72136 3.13451 3.26087 3.34478 3.35950 3.78528 4.39685 4.45391 4.69023 4.91784 4.94946 5.14093 5.16742 5.23514 5.24314 5.32654 5.39617 5.47280 5.50208 5.63917 5.70586 5.73165 5.84940 5.99538 6.06157 6.21638 6.34027 6.38934 6.51716 6.54986 6.69176 6.73981 7.10801 7.15950 7.27719 7.71240 8.04736 8.47713 8.95611 9.52142 11.04286 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.025261 B = 0.004282 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.166457 B = 6537.881870 C = 6935.393653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.045 4.045 4 C -0.156 4.156 5 C -0.075 4.075 6 C -0.164 4.164 7 C 0.197 3.803 8 N -0.504 5.504 9 C 0.421 3.579 10 N -0.434 5.434 11 C 0.115 3.885 12 C -0.123 4.123 13 C -0.010 4.010 14 C -0.522 4.522 15 H 0.072 0.928 16 C 0.067 3.933 17 N -0.902 5.902 18 Si 0.880 3.120 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.265 1.265 22 C -0.172 4.172 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.121 0.879 29 H 0.128 0.872 30 H 0.137 0.863 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.018 0.982 36 H 0.015 0.985 37 H 0.264 0.736 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.406 -19.070 -7.927 21.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.046 4.046 4 C -0.175 4.175 5 C -0.094 4.094 6 C -0.185 4.185 7 C 0.100 3.900 8 N -0.214 5.214 9 C 0.017 3.983 10 N -0.126 5.126 11 C -0.006 4.006 12 C -0.162 4.162 13 C -0.048 4.048 14 C -0.560 4.560 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.540 5.540 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.190 1.190 22 C -0.194 4.194 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.139 0.861 29 H 0.146 0.854 30 H 0.154 0.846 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.129 -19.544 -6.414 21.200 hybrid contribution 0.843 0.934 -0.345 1.304 sum 5.972 -18.611 -6.759 20.681 Atomic orbital electron populations 1.21746 0.94543 1.01646 1.02522 1.20552 0.96356 0.92548 1.02778 1.19605 0.96816 0.95829 0.92333 1.20903 1.03893 0.95485 0.97255 1.20948 0.96773 0.94249 0.97404 1.20841 1.06229 1.01198 0.90261 1.17746 0.96543 0.91522 0.84183 1.42238 1.68180 1.13480 0.97540 1.23499 0.92359 0.93500 0.88944 1.81888 1.17952 1.07130 1.05617 1.22246 0.98251 0.75985 1.04099 1.21961 0.96100 0.95612 1.02494 1.19516 0.97537 0.91256 0.96510 1.21073 0.93439 0.90355 1.51152 0.91020 1.25037 0.96888 0.97036 0.94494 1.69916 1.30305 1.02995 1.50820 0.86779 0.85472 0.78501 0.78528 1.20195 1.21365 1.18987 1.20599 1.06539 0.93734 0.98517 0.92333 0.92454 0.92455 0.90863 0.91159 0.86146 0.85376 0.84571 0.88663 0.89802 0.91614 0.92210 0.96404 0.96669 0.92659 0.86278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.89 37.16 0.37 -0.84 16 2 C -0.08 -0.72 6.06 -27.88 -0.17 -0.89 16 3 C -0.05 -0.48 5.13 -104.65 -0.54 -1.02 16 4 C -0.16 -1.56 9.70 -39.54 -0.38 -1.94 16 5 C -0.08 -0.78 10.04 -39.61 -0.40 -1.18 16 6 C -0.16 -1.97 9.21 -39.39 -0.36 -2.33 16 7 C 0.20 2.61 6.52 -83.72 -0.55 2.06 16 8 N -0.50 -7.16 2.72 -74.68 -0.20 -7.37 16 9 C 0.42 6.53 14.13 -102.19 -1.44 5.09 16 10 N -0.43 -7.24 18.54 41.27 0.77 -6.48 16 11 C 0.11 1.63 5.12 -4.04 -0.02 1.61 16 12 C -0.12 -2.24 5.48 -26.73 -0.15 -2.39 16 13 C -0.01 -0.22 4.04 -27.88 -0.11 -0.34 16 14 C -0.52 -14.45 9.66 -34.44 -0.33 -14.78 16 15 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 16 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 18 Si 0.88 20.96 27.47 -169.99 -4.67 16.29 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 22 C -0.17 -2.16 8.95 -39.39 -0.35 -2.51 16 23 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 27 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 28 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 29 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.14 1.56 6.15 -52.49 -0.32 1.24 16 31 H 0.10 1.15 6.21 -51.93 -0.32 0.83 16 32 H 0.08 1.13 8.03 -51.93 -0.42 0.72 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 36 H 0.02 0.32 7.57 -51.93 -0.39 -0.08 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.12 1.53 7.01 -52.49 -0.37 1.16 16 LS Contribution 324.29 15.07 4.89 4.89 Total: -1.00 -30.66 324.29 -8.56 -39.22 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -5.58 Total: -2.23 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -4.53 Total: -17.65 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 1.34 Total: -40.51 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.66 -8.56 -39.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160449346.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.993 kcal (2) G-P(sol) polarization free energy of solvation -30.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds