Wall clock time and date at job start Mon Mar 30 2020 07:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47214 * 2 1 4 4 C 1.38308 * 119.95848 * 270.01867 * 3 2 1 5 5 C 1.38271 * 120.14509 * 179.97438 * 4 3 2 6 6 C 1.38129 * 120.06996 * 359.71881 * 5 4 3 7 7 C 1.38873 * 119.92834 * 0.55700 * 6 5 4 8 8 N 1.39848 * 120.07412 * 179.72149 * 7 6 5 9 9 C 1.35498 * 119.99867 * 179.72676 * 8 7 6 10 10 N 5.48774 * 100.66460 * 57.82295 * 2 1 3 11 11 C 1.46499 * 119.99822 * 359.72218 * 8 7 6 12 12 C 1.53000 * 109.46840 * 90.00460 * 11 8 7 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 8 14 14 C 1.50697 * 109.47291 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00162 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99868 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47023 * 90.00014 * 18 16 14 20 20 H 1.48496 * 109.47251 * 210.00457 * 18 16 14 21 21 H 1.48498 * 109.47139 * 330.00202 * 18 16 14 22 22 C 1.38083 * 119.97131 * 89.99606 * 3 2 1 23 23 H 1.09010 * 109.46641 * 60.00682 * 1 2 3 24 24 H 1.08990 * 109.47219 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47309 * 300.00844 * 1 2 3 26 26 H 1.08994 * 109.47263 * 239.99622 * 2 1 3 27 27 H 1.08999 * 109.47004 * 119.99011 * 2 1 3 28 28 H 1.07996 * 119.93090 * 359.95258 * 4 3 2 29 29 H 1.08002 * 119.96575 * 179.97438 * 5 4 3 30 30 H 1.07996 * 120.03563 * 180.30107 * 6 5 4 31 31 H 1.09002 * 109.47391 * 330.00130 * 11 8 7 32 32 H 1.09001 * 109.46813 * 210.00186 * 11 8 7 33 33 H 1.09001 * 109.47194 * 299.99493 * 12 11 8 34 34 H 1.08992 * 109.47399 * 59.99666 * 12 11 8 35 35 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 36 36 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 37 37 H 0.96996 * 119.99309 * 179.97438 * 17 16 14 38 38 H 1.08002 * 120.03240 * 0.04137 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0721 -1.1983 5 6 2.7226 3.3759 -1.2028 6 6 2.9490 4.0341 -0.0097 7 6 2.7247 3.3811 1.1952 8 7 2.9584 4.0426 2.4050 9 6 2.7337 3.4059 3.5797 10 7 2.5456 2.8719 4.5646 11 6 3.4462 5.4240 2.4021 12 6 2.2558 6.3852 2.4013 13 6 2.7652 7.8279 2.3976 14 6 1.5928 8.7747 2.3962 15 1 0.5850 8.3862 2.3973 16 6 1.8065 10.1367 2.3934 17 7 0.7833 10.9630 2.3916 18 14 3.5495 10.8086 2.3921 19 1 4.0114 10.9838 0.9916 20 1 3.5753 12.1194 3.0895 21 1 4.4475 9.8567 3.0941 22 6 2.2622 2.0712 1.1962 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5140 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 2.0821 1.5612 -2.1325 29 1 2.9016 3.8816 -2.1402 30 1 3.3039 5.0540 -0.0139 31 1 4.0510 5.5939 1.5113 32 1 4.0524 5.5971 3.2913 33 1 1.6496 6.2121 1.5120 34 1 1.6510 6.2153 3.2919 35 1 3.3716 8.0014 3.2866 36 1 3.3698 7.9975 1.5066 37 1 0.9338 11.9212 2.3901 38 1 2.0828 1.5619 2.1315 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160449346.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:39 Heat of formation + Delta-G solvation = 31.505019 kcal Electronic energy + Delta-G solvation = -18130.642450 eV Core-core repulsion = 15358.102601 eV Total energy + Delta-G solvation = -2772.539849 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.15745 -38.79087 -36.82657 -35.64580 -34.57239 -33.64512 -31.20737 -30.04288 -28.83295 -25.43550 -24.35215 -24.07351 -22.12582 -21.65553 -19.81130 -18.91046 -18.02281 -16.83094 -16.30518 -16.16817 -16.05042 -15.79275 -15.30701 -14.77818 -14.73336 -14.57529 -14.26405 -14.05698 -13.95257 -13.53507 -13.41346 -13.14431 -12.83891 -12.71849 -12.50117 -12.43617 -12.01704 -11.80726 -11.77827 -11.60780 -11.51818 -11.37580 -10.92608 -10.73584 -9.70997 -8.75340 -8.26555 -6.31956 0.42067 0.44110 1.17249 1.40631 1.43658 1.51013 1.54769 1.96089 2.39807 2.88989 3.09442 3.53680 3.91768 3.95835 4.12589 4.17203 4.29954 4.32821 4.44410 4.48676 4.53092 4.55185 4.69104 4.76827 4.80016 4.97041 5.01918 5.08735 5.13510 5.19263 5.38136 5.45249 5.48431 5.56854 5.60178 5.66830 5.70667 5.80618 6.18907 6.30300 6.76872 6.86308 7.32760 8.90661 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.025261 B = 0.004282 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.166457 B = 6537.881870 C = 6935.393653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.050 4.050 4 C -0.151 4.151 5 C -0.075 4.075 6 C -0.172 4.172 7 C 0.173 3.827 8 N -0.502 5.502 9 C 0.429 3.571 10 N -0.462 5.462 11 C 0.124 3.876 12 C -0.112 4.112 13 C -0.008 4.008 14 C -0.535 4.535 15 H 0.023 0.977 16 C 0.000 4.000 17 N -0.956 5.956 18 Si 0.955 3.045 19 H -0.260 1.260 20 H -0.291 1.291 21 H -0.238 1.238 22 C -0.187 4.187 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.038 0.962 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.148 0.852 29 H 0.154 0.846 30 H 0.142 0.858 31 H 0.125 0.875 32 H 0.095 0.905 33 H 0.058 0.942 34 H 0.035 0.965 35 H 0.026 0.974 36 H 0.038 0.962 37 H 0.265 0.735 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.851 -20.095 -9.768 23.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.050 4.050 4 C -0.171 4.171 5 C -0.094 4.094 6 C -0.193 4.193 7 C 0.078 3.922 8 N -0.213 5.213 9 C 0.025 3.975 10 N -0.155 5.155 11 C 0.003 3.997 12 C -0.151 4.151 13 C -0.046 4.046 14 C -0.573 4.573 15 H 0.041 0.959 16 C -0.196 4.196 17 N -0.597 5.597 18 Si 0.778 3.222 19 H -0.185 1.185 20 H -0.218 1.218 21 H -0.161 1.161 22 C -0.209 4.209 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.057 0.943 26 H 0.113 0.887 27 H 0.087 0.913 28 H 0.166 0.834 29 H 0.172 0.828 30 H 0.160 0.840 31 H 0.143 0.857 32 H 0.114 0.886 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.044 0.956 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.575 -20.611 -8.276 23.466 hybrid contribution -0.074 1.186 0.153 1.198 sum 7.501 -19.425 -8.123 22.351 Atomic orbital electron populations 1.21737 0.94425 1.02456 1.01709 1.20607 0.96351 0.91377 1.03784 1.19914 0.96244 0.96876 0.92015 1.21271 1.02389 0.95427 0.97969 1.21309 0.95769 0.94473 0.97834 1.21031 1.06419 1.01573 0.90303 1.17976 0.98117 0.92041 0.84089 1.42261 1.68362 1.13338 0.97385 1.23610 0.91791 0.93042 0.89032 1.81874 1.19124 1.08034 1.06517 1.22128 0.96367 0.74969 1.06218 1.21753 0.97467 0.94879 1.01037 1.19458 0.95545 0.91905 0.97658 1.21486 0.93477 0.91796 1.50522 0.95858 1.26117 1.02170 0.97360 0.93999 1.70098 1.33409 1.03447 1.52747 0.85588 0.79343 0.77765 0.79531 1.18512 1.21753 1.16111 1.20678 1.07377 0.93870 0.98939 0.92111 0.90882 0.94268 0.88734 0.91295 0.83437 0.82812 0.84005 0.85669 0.88623 0.92360 0.94603 0.95607 0.94355 0.92586 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.89 71.98 0.71 -1.47 16 2 C -0.08 -1.26 6.06 29.85 0.18 -1.08 16 3 C -0.05 -0.98 5.13 -19.88 -0.10 -1.09 16 4 C -0.15 -2.57 9.70 22.29 0.22 -2.35 16 5 C -0.08 -1.34 10.04 22.25 0.22 -1.12 16 6 C -0.17 -3.77 9.21 22.40 0.21 -3.56 16 7 C 0.17 4.41 6.52 38.18 0.25 4.66 16 8 N -0.50 -13.86 2.72 -390.20 -1.06 -14.92 16 9 C 0.43 13.32 14.13 184.39 2.60 15.93 16 10 N -0.46 -15.65 18.54 17.21 0.32 -15.33 16 11 C 0.12 3.26 5.12 86.38 0.44 3.71 16 12 C -0.11 -4.04 5.48 30.59 0.17 -3.87 16 13 C -0.01 -0.33 4.04 29.85 0.12 -0.21 16 14 C -0.53 -30.18 9.66 25.60 0.25 -29.93 16 15 H 0.02 1.48 7.99 -2.91 -0.02 1.45 16 16 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 17 N -0.96 -59.89 13.96 21.45 0.30 -59.59 16 18 Si 0.96 42.26 27.47 68.60 1.88 44.15 16 19 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 20 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.24 -9.43 6.54 99.48 0.65 -8.78 16 22 C -0.19 -4.59 8.95 22.39 0.20 -4.39 16 23 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 24 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.04 0.71 8.14 -2.39 -0.02 0.70 16 26 H 0.09 1.03 8.08 -2.39 -0.02 1.01 16 27 H 0.07 1.05 8.08 -2.39 -0.02 1.03 16 28 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 29 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 30 H 0.14 2.87 6.15 -2.91 -0.02 2.85 16 31 H 0.13 2.60 6.21 -2.39 -0.01 2.58 16 32 H 0.10 2.34 8.03 -2.39 -0.02 2.32 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.03 1.07 7.20 -2.39 -0.02 1.05 16 36 H 0.04 1.48 7.57 -2.39 -0.02 1.46 16 37 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 38 H 0.11 2.82 7.01 -2.91 -0.02 2.80 16 Total: -1.00 -68.80 324.29 8.36 -60.44 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.98 Total: 9.58 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: 5.93 Total: -24.33 kcal Atomic # 7 Polarization: -89.40 SS G_CDS: -0.44 Total: -89.84 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.88 Total: 44.15 kcal Total: -68.80 8.36 -60.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160449346.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.949 kcal (2) G-P(sol) polarization free energy of solvation -68.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds