Wall clock time and date at job start Mon Mar 30 2020 06:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00320 * 2 1 4 4 H 1.48496 * 109.47374 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46952 * 300.00332 * 3 2 1 6 6 H 1.48509 * 109.46747 * 59.99773 * 3 2 1 7 7 C 1.37880 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00145 * 211.55850 * 7 2 1 9 9 C 1.50700 * 120.00112 * 31.56048 * 7 2 1 10 10 C 1.53004 * 115.54623 * 354.89140 * 9 7 2 11 11 N 1.46898 * 109.47198 * 54.28935 * 10 9 7 12 12 C 1.47932 * 111.00146 * 41.13298 * 11 10 9 13 13 C 1.54590 * 102.59667 * 149.09287 * 12 11 10 14 14 C 1.51584 * 102.89906 * 334.50042 * 13 12 11 15 15 C 1.38136 * 131.47983 * 196.12546 * 14 13 12 16 16 C 1.38238 * 120.21133 * 179.36343 * 15 14 13 17 17 C 1.38316 * 119.93576 * 359.74932 * 16 15 14 18 18 C 1.38446 * 120.17513 * 0.64172 * 17 16 15 19 19 N 1.40014 * 119.96347 * 179.76436 * 18 17 16 20 20 C 1.38696 * 108.00239 * 15.79317 * 14 13 12 21 21 C 1.52995 * 117.50033 * 140.56254 * 9 7 2 22 22 C 1.52996 * 117.50182 * 209.22427 * 9 7 2 23 23 H 0.96998 * 120.00010 * 4.65605 * 1 2 3 24 24 H 1.08996 * 109.47469 * 294.28376 * 10 9 7 25 25 H 1.09002 * 109.46800 * 174.28227 * 10 9 7 26 26 H 1.09004 * 110.78239 * 30.80956 * 12 11 10 27 27 H 1.09004 * 110.78196 * 267.36754 * 12 11 10 28 28 H 1.09004 * 110.72649 * 216.14803 * 13 12 11 29 29 H 1.08997 * 110.73112 * 92.85308 * 13 12 11 30 30 H 1.07996 * 119.89882 * 359.34533 * 15 14 13 31 31 H 1.08005 * 120.03309 * 180.02562 * 16 15 14 32 32 H 1.08000 * 119.90805 * 180.40717 * 17 16 15 33 33 H 0.97001 * 120.00240 * 216.56069 * 19 18 17 34 34 H 0.97006 * 119.99509 * 36.28914 * 19 18 17 35 35 H 1.09001 * 117.50113 * 215.00032 * 21 9 7 36 36 H 1.08995 * 117.50051 * 0.02562 * 21 9 7 37 37 H 1.09007 * 117.49794 * 359.97438 * 22 9 7 38 38 H 1.09000 * 117.50161 * 144.97084 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 2.9647 -1.2631 0.4901 9 6 1.4182 -2.4030 -0.6820 10 6 0.0031 -2.2262 -1.2363 11 7 -0.0312 -1.0598 -2.1286 12 6 1.1779 -1.0075 -2.9794 13 6 0.6537 -0.3354 -4.2691 14 6 -0.8227 -0.6786 -4.2535 15 6 -1.7836 -0.6315 -5.2448 16 6 -3.0829 -1.0173 -4.9731 17 6 -3.4217 -1.4570 -3.7062 18 6 -2.4659 -1.4993 -2.7055 19 7 -2.8149 -1.9405 -1.4233 20 6 -1.1497 -1.1070 -2.9755 21 6 2.3747 -3.3071 -1.4621 22 6 1.7929 -3.7787 -0.1271 23 1 -0.4850 0.8373 -0.0682 24 1 -0.6936 -2.0738 -0.4120 25 1 -0.2829 -3.1184 -1.7934 26 1 1.5471 -2.0115 -3.1889 27 1 1.9527 -0.3986 -2.5134 28 1 1.1388 -0.7582 -5.1490 29 1 0.7992 0.7440 -4.2283 30 1 -1.5190 -0.2918 -6.2353 31 1 -3.8318 -0.9797 -5.7504 32 1 -4.4355 -1.7646 -3.4961 33 1 -2.4166 -1.5254 -0.6424 34 1 -3.4581 -2.6587 -1.3160 35 1 1.9959 -3.7761 -2.3702 36 1 3.4281 -3.0278 -1.4813 37 1 2.4638 -3.8094 0.7314 38 1 1.0311 -4.5578 -0.1565 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161684908.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:45 Heat of formation + Delta-G solvation = 96.549103 kcal Electronic energy + Delta-G solvation = -20262.205744 eV Core-core repulsion = 17492.486418 eV Total energy + Delta-G solvation = -2769.719326 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.06387 -37.18955 -35.29165 -33.89818 -32.21682 -30.25513 -28.27136 -27.69260 -25.60917 -24.39441 -22.22775 -21.02031 -20.70174 -20.16476 -18.83866 -16.59429 -15.82369 -15.77842 -15.33314 -14.81855 -14.57376 -14.19807 -13.71734 -13.63300 -13.06983 -12.60387 -12.31345 -12.18330 -11.73838 -11.56430 -11.21955 -10.95364 -10.73591 -10.66831 -10.60862 -10.48605 -10.34266 -10.19648 -9.57789 -9.23348 -9.15075 -8.86959 -8.58502 -7.91533 -7.35873 -6.26120 -6.12280 -3.87959 2.02758 2.16921 3.31193 3.44141 3.47625 4.34872 4.47997 4.68333 4.72160 5.00875 5.30979 5.46934 5.56835 5.64163 5.81486 5.85444 5.98145 6.00892 6.09399 6.32519 6.36755 6.48517 6.55070 6.59439 6.66111 6.69150 6.82908 6.83813 6.89727 7.00116 7.04813 7.19119 7.25569 7.44203 7.55350 7.90849 7.98439 8.23761 8.43382 8.50114 8.58608 8.97187 9.59629 10.91297 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.019979 B = 0.009167 C = 0.008320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.105780 B = 3053.775527 C = 3364.400996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.108 3.892 3 Si 0.855 3.145 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.289 1.289 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.052 3.948 10 C 0.129 3.871 11 N -0.405 5.405 12 C 0.053 3.947 13 C -0.087 4.087 14 C -0.134 4.134 15 C -0.123 4.123 16 C -0.136 4.136 17 C -0.163 4.163 18 C 0.179 3.821 19 N -0.895 5.895 20 C 0.072 3.928 21 C -0.224 4.224 22 C -0.215 4.215 23 H 0.260 0.740 24 H 0.098 0.902 25 H -0.003 1.003 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.408 0.592 34 H 0.383 0.617 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.589 -2.399 -6.882 8.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.103 4.103 3 Si 0.681 3.319 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.216 1.216 7 C -0.559 4.559 8 H 0.075 0.925 9 C 0.051 3.949 10 C 0.003 3.997 11 N -0.115 5.115 12 C -0.073 4.073 13 C -0.125 4.125 14 C -0.139 4.139 15 C -0.143 4.143 16 C -0.156 4.156 17 C -0.186 4.186 18 C 0.075 3.925 19 N -0.442 5.442 20 C -0.032 4.032 21 C -0.262 4.262 22 C -0.253 4.253 23 H 0.071 0.929 24 H 0.116 0.884 25 H 0.015 0.985 26 H 0.075 0.925 27 H 0.115 0.885 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.241 0.759 34 H 0.210 0.790 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.679 -1.811 -6.445 8.168 hybrid contribution 0.441 0.190 -0.187 0.515 sum -4.238 -1.621 -6.633 8.036 Atomic orbital electron populations 1.70105 1.06500 1.27110 1.39364 1.24567 0.93889 0.98287 0.93578 0.87195 0.81448 0.85610 0.77665 1.19848 1.20603 1.21587 1.20145 1.04506 0.92995 1.38282 0.92496 1.19179 0.90678 0.89052 0.96004 1.21500 0.97450 0.85862 0.94863 1.60618 0.98581 1.38420 1.13856 1.23286 0.93787 1.00395 0.89846 1.21368 0.91526 1.00915 0.98682 1.20368 0.95958 1.04335 0.93241 1.20077 0.92631 1.03726 0.97900 1.20510 0.95753 1.03183 0.96174 1.20505 0.97395 1.06743 0.93938 1.17110 0.89836 0.98632 0.86890 1.42473 1.53369 1.43634 1.04773 1.19970 0.92067 0.99953 0.91241 1.23168 1.00094 1.09689 0.93292 1.22946 1.03988 1.01913 0.96443 0.92942 0.88364 0.98531 0.92534 0.88502 0.91475 0.90714 0.87502 0.87081 0.86959 0.75905 0.78968 0.91974 0.90557 0.90548 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.23 9.32 55.43 0.52 -19.71 16 2 C 0.11 2.74 3.54 -17.82 -0.06 2.67 16 3 Si 0.85 20.08 29.40 -169.99 -5.00 15.08 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.52 -13.60 8.22 -34.44 -0.28 -13.88 16 8 H 0.06 1.54 7.99 -52.49 -0.42 1.12 16 9 C 0.05 1.22 1.43 -155.66 -0.22 0.99 16 10 C 0.13 2.90 3.20 -3.82 -0.01 2.89 16 11 N -0.40 -8.91 2.43 -168.79 -0.41 -9.32 16 12 C 0.05 1.10 5.15 -2.42 -0.01 1.09 16 13 C -0.09 -1.59 7.03 -26.61 -0.19 -1.78 16 14 C -0.13 -2.56 6.23 -104.06 -0.65 -3.21 16 15 C -0.12 -2.06 10.03 -39.62 -0.40 -2.45 16 16 C -0.14 -2.13 10.05 -39.55 -0.40 -2.52 16 17 C -0.16 -2.67 9.94 -39.48 -0.39 -3.06 16 18 C 0.18 3.35 6.66 -83.39 -0.56 2.79 16 19 N -0.89 -15.20 7.79 32.60 0.25 -14.94 16 20 C 0.07 1.49 5.83 -83.12 -0.48 1.00 16 21 C -0.22 -4.79 8.18 -26.70 -0.22 -5.01 16 22 C -0.21 -4.66 9.96 -26.70 -0.27 -4.93 16 23 H 0.26 6.54 8.32 -40.82 -0.34 6.20 16 24 H 0.10 2.32 5.04 -51.93 -0.26 2.06 16 25 H 0.00 -0.08 7.88 -51.93 -0.41 -0.49 16 26 H 0.06 1.17 5.45 -51.93 -0.28 0.88 16 27 H 0.10 2.18 6.55 -51.93 -0.34 1.84 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.11 1.42 8.06 -52.48 -0.42 0.99 16 32 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 33 H 0.41 7.67 7.18 -40.82 -0.29 7.38 16 34 H 0.38 5.38 8.96 -40.82 -0.37 5.02 16 35 H 0.06 1.26 7.49 -51.93 -0.39 0.87 16 36 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 37 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 295.46 15.07 4.45 4.45 Total: -1.00 -26.10 295.46 -9.60 -35.70 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -5.28 Total: 14.15 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: -4.14 Total: -25.41 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.36 Total: -43.97 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.00 Total: 15.08 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.10 -9.60 -35.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161684908.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.253 kcal (2) G-P(sol) polarization free energy of solvation -26.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds