Wall clock time and date at job start Mon Mar 30 2020 06:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00320 * 2 1 4 4 H 1.48496 * 109.47374 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46952 * 300.00332 * 3 2 1 6 6 H 1.48509 * 109.46747 * 59.99773 * 3 2 1 7 7 C 1.37880 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00145 * 211.55850 * 7 2 1 9 9 C 1.50700 * 120.00112 * 31.56048 * 7 2 1 10 10 C 1.53004 * 115.54623 * 354.89140 * 9 7 2 11 11 N 1.46898 * 109.47198 * 54.28935 * 10 9 7 12 12 C 1.47932 * 111.00146 * 41.13298 * 11 10 9 13 13 C 1.54590 * 102.59667 * 149.09287 * 12 11 10 14 14 C 1.51584 * 102.89906 * 334.50042 * 13 12 11 15 15 C 1.38136 * 131.47983 * 196.12546 * 14 13 12 16 16 C 1.38238 * 120.21133 * 179.36343 * 15 14 13 17 17 C 1.38316 * 119.93576 * 359.74932 * 16 15 14 18 18 C 1.38446 * 120.17513 * 0.64172 * 17 16 15 19 19 N 1.40014 * 119.96347 * 179.76436 * 18 17 16 20 20 C 1.38696 * 108.00239 * 15.79317 * 14 13 12 21 21 C 1.52995 * 117.50033 * 140.56254 * 9 7 2 22 22 C 1.52996 * 117.50182 * 209.22427 * 9 7 2 23 23 H 0.96998 * 120.00010 * 4.65605 * 1 2 3 24 24 H 1.08996 * 109.47469 * 294.28376 * 10 9 7 25 25 H 1.09002 * 109.46800 * 174.28227 * 10 9 7 26 26 H 1.09004 * 110.78239 * 30.80956 * 12 11 10 27 27 H 1.09004 * 110.78196 * 267.36754 * 12 11 10 28 28 H 1.09004 * 110.72649 * 216.14803 * 13 12 11 29 29 H 1.08997 * 110.73112 * 92.85308 * 13 12 11 30 30 H 1.07996 * 119.89882 * 359.34533 * 15 14 13 31 31 H 1.08005 * 120.03309 * 180.02562 * 16 15 14 32 32 H 1.08000 * 119.90805 * 180.40717 * 17 16 15 33 33 H 0.97001 * 120.00240 * 216.56069 * 19 18 17 34 34 H 0.97006 * 119.99509 * 36.28914 * 19 18 17 35 35 H 1.09001 * 117.50113 * 215.00032 * 21 9 7 36 36 H 1.08995 * 117.50051 * 0.02562 * 21 9 7 37 37 H 1.09007 * 117.49794 * 359.97438 * 22 9 7 38 38 H 1.09000 * 117.50161 * 144.97084 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 2.9647 -1.2631 0.4901 9 6 1.4182 -2.4030 -0.6820 10 6 0.0031 -2.2262 -1.2363 11 7 -0.0312 -1.0598 -2.1286 12 6 1.1779 -1.0075 -2.9794 13 6 0.6537 -0.3354 -4.2691 14 6 -0.8227 -0.6786 -4.2535 15 6 -1.7836 -0.6315 -5.2448 16 6 -3.0829 -1.0173 -4.9731 17 6 -3.4217 -1.4570 -3.7062 18 6 -2.4659 -1.4993 -2.7055 19 7 -2.8149 -1.9405 -1.4233 20 6 -1.1497 -1.1070 -2.9755 21 6 2.3747 -3.3071 -1.4621 22 6 1.7929 -3.7787 -0.1271 23 1 -0.4850 0.8373 -0.0682 24 1 -0.6936 -2.0738 -0.4120 25 1 -0.2829 -3.1184 -1.7934 26 1 1.5471 -2.0115 -3.1889 27 1 1.9527 -0.3986 -2.5134 28 1 1.1388 -0.7582 -5.1490 29 1 0.7992 0.7440 -4.2283 30 1 -1.5190 -0.2918 -6.2353 31 1 -3.8318 -0.9797 -5.7504 32 1 -4.4355 -1.7646 -3.4961 33 1 -2.4166 -1.5254 -0.6424 34 1 -3.4581 -2.6587 -1.3160 35 1 1.9959 -3.7761 -2.3702 36 1 3.4281 -3.0278 -1.4813 37 1 2.4638 -3.8094 0.7314 38 1 1.0311 -4.5578 -0.1565 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161684908.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:44 Heat of formation + Delta-G solvation = 83.717130 kcal Electronic energy + Delta-G solvation = -20262.762180 eV Core-core repulsion = 17492.486418 eV Total energy + Delta-G solvation = -2770.275762 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.52455 -38.80434 -36.80063 -35.27744 -34.13556 -31.74292 -29.70149 -29.07445 -27.50882 -26.03631 -23.75176 -22.66539 -22.07039 -21.65981 -20.63779 -18.26833 -17.42048 -17.10636 -16.76800 -16.46258 -16.32414 -15.69911 -15.41418 -15.05419 -14.74336 -14.07086 -13.86361 -13.63467 -13.55815 -13.09645 -12.76768 -12.74156 -12.46829 -12.24955 -12.15196 -12.10631 -12.04943 -11.86778 -11.30495 -10.87398 -10.72331 -10.59622 -10.20416 -9.78864 -8.72902 -8.07588 -7.73687 -5.85722 0.68118 0.83523 1.40273 1.50373 1.56072 2.53916 2.90132 3.08094 3.37810 3.39566 3.71764 3.88275 4.06463 4.26112 4.30347 4.42493 4.53394 4.59936 4.64567 4.72937 4.76501 4.85441 4.92671 5.00204 5.10047 5.13789 5.19220 5.30074 5.30966 5.50767 5.54571 5.66535 5.75764 5.86593 5.91156 6.17003 6.41232 6.59381 6.70931 6.97298 7.04575 7.28530 7.61420 8.93693 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.019979 B = 0.009167 C = 0.008320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.105780 B = 3053.775527 C = 3364.400996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.087 3.913 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.292 1.292 7 C -0.546 4.546 8 H 0.036 0.964 9 C 0.028 3.972 10 C 0.147 3.853 11 N -0.420 5.420 12 C 0.052 3.948 13 C -0.081 4.081 14 C -0.146 4.146 15 C -0.128 4.128 16 C -0.125 4.125 17 C -0.164 4.164 18 C 0.163 3.837 19 N -0.892 5.892 20 C 0.031 3.969 21 C -0.206 4.206 22 C -0.211 4.211 23 H 0.257 0.743 24 H 0.083 0.917 25 H -0.010 1.010 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.134 0.866 31 H 0.148 0.852 32 H 0.138 0.862 33 H 0.399 0.601 34 H 0.396 0.604 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.932 -2.533 -8.797 10.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.124 4.124 3 Si 0.724 3.276 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.218 1.218 7 C -0.581 4.581 8 H 0.054 0.946 9 C 0.027 3.973 10 C 0.021 3.979 11 N -0.131 5.131 12 C -0.074 4.074 13 C -0.118 4.118 14 C -0.150 4.150 15 C -0.148 4.148 16 C -0.144 4.144 17 C -0.186 4.186 18 C 0.059 3.941 19 N -0.439 5.439 20 C -0.072 4.072 21 C -0.244 4.244 22 C -0.249 4.249 23 H 0.067 0.933 24 H 0.101 0.899 25 H 0.008 0.992 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.152 0.848 31 H 0.166 0.834 32 H 0.155 0.845 33 H 0.229 0.771 34 H 0.225 0.775 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.044 -1.958 -8.374 10.512 hybrid contribution 0.797 0.208 0.367 0.901 sum -5.248 -1.750 -8.007 9.732 Atomic orbital electron populations 1.70163 1.06707 1.26985 1.39264 1.24858 0.94359 0.99523 0.93621 0.86547 0.80344 0.83546 0.77187 1.20381 1.20741 1.21847 1.20180 1.03927 0.94654 1.39316 0.94556 1.19250 0.91785 0.88988 0.97263 1.21206 0.96166 0.86125 0.94440 1.60586 0.99395 1.38410 1.14741 1.23156 0.93282 0.99948 0.90993 1.21316 0.91630 1.00613 0.98232 1.20628 0.96564 1.04482 0.93368 1.20436 0.92602 1.03233 0.98525 1.20987 0.96101 1.00744 0.96589 1.20859 0.98075 1.05981 0.93724 1.17445 0.89828 0.98991 0.87821 1.42405 1.53495 1.43959 1.04060 1.20239 0.92397 1.02601 0.92011 1.23074 0.99514 1.08263 0.93583 1.22971 1.04107 1.01269 0.96539 0.93322 0.89937 0.99215 0.92917 0.90972 0.88900 0.90938 0.84822 0.83421 0.84452 0.77092 0.77492 0.90710 0.90768 0.90940 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -41.08 9.32 21.45 0.20 -40.88 16 2 C 0.09 4.49 3.54 84.66 0.30 4.79 16 3 Si 0.90 41.98 29.40 68.60 2.02 44.00 16 4 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 6 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 7 C -0.55 -28.94 8.22 25.60 0.21 -28.72 16 8 H 0.04 2.02 7.99 -2.91 -0.02 2.00 16 9 C 0.03 1.33 1.43 -52.93 -0.08 1.25 16 10 C 0.15 6.67 3.20 86.30 0.28 6.95 16 11 N -0.42 -18.59 2.43 -687.93 -1.67 -20.26 16 12 C 0.05 2.19 5.15 86.65 0.45 2.64 16 13 C -0.08 -2.83 7.03 30.67 0.22 -2.62 16 14 C -0.15 -5.30 6.23 -19.50 -0.12 -5.43 16 15 C -0.13 -3.83 10.03 22.25 0.22 -3.61 16 16 C -0.12 -3.38 10.05 22.29 0.22 -3.15 16 17 C -0.16 -4.86 9.94 22.34 0.22 -4.64 16 18 C 0.16 5.87 6.66 38.30 0.25 6.13 16 19 N -0.89 -29.74 7.79 -50.78 -0.40 -30.13 16 20 C 0.03 1.24 5.83 38.30 0.22 1.47 16 21 C -0.21 -8.76 8.18 30.62 0.25 -8.51 16 22 C -0.21 -9.11 9.96 30.62 0.30 -8.80 16 23 H 0.26 13.05 8.32 -92.71 -0.77 12.28 16 24 H 0.08 3.97 5.04 -2.39 -0.01 3.96 16 25 H -0.01 -0.46 7.88 -2.39 -0.02 -0.48 16 26 H 0.05 2.17 5.45 -2.39 -0.01 2.16 16 27 H 0.07 3.32 6.55 -2.39 -0.02 3.30 16 28 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 31 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 32 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 33 H 0.40 15.09 7.18 -92.71 -0.67 14.42 16 34 H 0.40 10.71 8.96 -92.70 -0.83 9.88 16 35 H 0.07 2.96 7.49 -2.39 -0.02 2.95 16 36 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 37 H 0.07 3.15 8.14 -2.38 -0.02 3.13 16 38 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -55.62 295.46 2.69 -52.92 By element: Atomic # 1 Polarization: 37.02 SS G_CDS: -0.41 Total: 36.61 kcal Atomic # 6 Polarization: -45.21 SS G_CDS: 2.95 Total: -42.26 kcal Atomic # 7 Polarization: -89.41 SS G_CDS: -1.86 Total: -91.27 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.02 Total: 44.00 kcal Total: -55.62 2.69 -52.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161684908.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.642 kcal (2) G-P(sol) polarization free energy of solvation -55.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds