Wall clock time and date at job start Mon Mar 30 2020 07:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47312 * 2 1 4 4 N 1.46492 * 109.47252 * 180.02562 * 3 2 1 5 5 C 1.36942 * 120.00177 * 273.86613 * 4 3 2 6 6 H 1.07995 * 119.99873 * 13.38505 * 5 4 3 7 7 C 1.38814 * 120.00067 * 193.38253 * 5 4 3 8 8 N 1.31620 * 119.99608 * 22.47013 * 7 5 4 9 9 Si 1.86792 * 119.99917 * 202.46564 * 7 5 4 10 10 H 1.48495 * 109.47544 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47145 * 120.00357 * 9 7 5 12 12 H 1.48506 * 109.47219 * 240.00117 * 9 7 5 13 13 C 1.46508 * 120.00181 * 93.86376 * 4 3 2 14 14 C 1.50702 * 109.46879 * 84.43298 * 13 4 3 15 15 C 1.38385 * 119.84793 * 358.08344 * 14 13 4 16 16 C 1.37924 * 120.15458 * 179.97438 * 15 14 13 17 17 C 1.39653 * 119.84075 * 0.02562 * 16 15 14 18 18 C 1.43202 * 120.14849 * 179.97438 * 17 16 15 19 19 N 9.27878 * 110.87481 * 338.93381 * 2 1 3 20 20 C 1.39611 * 119.70193 * 0.27765 * 17 16 15 21 21 C 1.37969 * 119.84604 * 359.46156 * 20 17 16 22 22 C 1.50700 * 119.92521 * 180.23188 * 21 20 17 23 23 H 1.09004 * 109.46588 * 300.00034 * 1 2 3 24 24 H 1.08994 * 109.47218 * 59.99737 * 1 2 3 25 25 H 1.09000 * 109.46781 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47284 * 240.00192 * 2 1 3 27 27 H 1.09002 * 109.47533 * 120.00236 * 2 1 3 28 28 H 1.09001 * 109.46789 * 59.99889 * 3 2 1 29 29 H 1.09006 * 109.46895 * 300.00070 * 3 2 1 30 30 H 0.97004 * 119.99542 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.46758 * 324.43528 * 13 4 3 32 32 H 1.09002 * 109.47382 * 204.43419 * 13 4 3 33 33 H 1.08004 * 119.92521 * 359.97336 * 15 14 13 34 34 H 1.07997 * 120.08143 * 179.97438 * 16 15 14 35 35 H 1.08004 * 120.07626 * 179.72643 * 20 17 16 36 36 H 1.08995 * 109.47069 * 267.69621 * 22 21 20 37 37 H 1.09000 * 109.46647 * 27.69787 * 22 21 20 38 38 H 1.09004 * 109.46698 * 147.69089 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3624 1.1823 6 1 3.6726 1.0840 2.0884 7 6 5.5501 1.6389 1.2168 8 7 6.0946 2.3817 0.2766 9 14 6.6071 0.9568 2.5976 10 1 5.7611 0.1584 3.5206 11 1 7.6693 0.0905 2.0262 12 1 7.2316 2.0788 3.3436 13 6 4.2370 1.5282 -1.2668 14 6 4.3687 2.9732 -1.6741 15 6 3.7955 3.9632 -0.8954 16 6 3.9125 5.2877 -1.2620 17 6 4.6110 5.6285 -2.4223 18 6 4.7361 7.0015 -2.8093 19 7 4.8363 8.0903 -3.1163 20 6 5.1813 4.6241 -3.2066 21 6 5.0611 3.3036 -2.8252 22 6 5.6805 2.2184 -3.6677 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9564 -0.8900 30 1 7.0449 2.5752 0.3009 31 1 3.6944 0.9813 -2.0379 32 1 5.2290 1.0937 -1.1431 33 1 3.2553 3.6981 0.0014 34 1 3.4644 6.0593 -0.6536 35 1 5.7190 4.8805 -4.1075 36 1 4.9462 1.8514 -4.3847 37 1 6.5411 2.6203 -4.2024 38 1 6.0023 1.3988 -3.0252 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165424099.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:08 Heat of formation + Delta-G solvation = 65.914508 kcal Electronic energy + Delta-G solvation = -19145.246655 eV Core-core repulsion = 16374.198914 eV Total energy + Delta-G solvation = -2771.047741 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.02959 -36.59538 -35.72433 -33.21666 -32.33034 -31.13349 -29.97820 -26.77851 -25.97182 -25.58888 -22.76312 -21.32616 -20.95988 -20.00145 -17.57369 -16.90671 -15.26268 -14.98638 -14.65607 -14.32458 -13.83100 -13.67662 -13.58302 -13.10215 -12.94363 -12.88514 -12.46622 -12.37570 -12.32084 -11.79640 -11.56586 -11.49190 -11.22916 -11.00135 -10.81460 -10.78046 -10.56362 -10.39960 -10.27263 -10.18863 -9.91481 -9.76022 -8.62715 -8.01868 -7.60715 -7.01046 -5.86344 -3.21704 1.60629 2.17682 3.09826 3.33357 3.44084 3.44298 3.58977 4.42926 4.47470 4.65111 5.18811 5.31776 5.51775 5.54589 5.57257 5.66142 5.79716 5.92172 5.97184 6.06389 6.13591 6.14208 6.34001 6.34364 6.43089 6.48033 6.51599 6.63661 6.66633 6.81729 6.86341 6.99942 7.06624 7.19855 7.27538 7.67395 7.71029 7.77667 7.94550 8.23578 9.09610 9.74230 10.19303 11.17589 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.014911 B = 0.007555 C = 0.006090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.324235 B = 3705.206503 C = 4596.863520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.143 4.143 3 C 0.147 3.853 4 N -0.596 5.596 5 C -0.256 4.256 6 H 0.073 0.927 7 C 0.004 3.996 8 N -0.891 5.891 9 Si 0.895 3.105 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.293 1.293 13 C 0.197 3.803 14 C 0.028 3.972 15 C -0.077 4.077 16 C -0.083 4.083 17 C -0.076 4.076 18 C 0.276 3.724 19 N -0.463 5.463 20 C -0.074 4.074 21 C -0.109 4.109 22 C -0.105 4.105 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.043 0.957 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.039 0.961 30 H 0.254 0.746 31 H 0.030 0.970 32 H 0.104 0.896 33 H 0.135 0.865 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.305 -3.002 -4.903 7.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C 0.020 3.980 4 N -0.317 5.317 5 C -0.385 4.385 6 H 0.091 0.909 7 C -0.194 4.194 8 N -0.536 5.536 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.220 1.220 13 C 0.071 3.929 14 C 0.025 3.975 15 C -0.096 4.096 16 C -0.104 4.104 17 C -0.080 4.080 18 C -0.037 4.037 19 N -0.140 5.140 20 C -0.095 4.095 21 C -0.110 4.110 22 C -0.162 4.162 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.121 0.879 33 H 0.152 0.848 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.975 -1.271 -5.360 7.423 hybrid contribution 0.848 -0.556 1.030 1.445 sum -4.128 -1.827 -4.330 6.255 Atomic orbital electron populations 1.21731 0.97310 1.00479 1.01063 1.22110 0.93717 1.00804 1.01664 1.20861 0.84523 0.93505 0.99076 1.44076 0.99628 1.85121 1.02834 1.19198 0.91197 1.40508 0.87596 0.90894 1.24725 0.97779 0.98858 0.98051 1.70049 1.11702 1.36515 1.35322 0.86345 0.80691 0.78705 0.81757 1.20568 1.21705 1.22047 1.19909 0.98027 0.89632 0.85300 1.20854 0.88466 0.99084 0.89142 1.20919 0.99145 0.90430 0.99071 1.21013 0.97806 0.97184 0.94365 1.15782 1.08332 0.84286 0.99592 1.26043 0.92308 0.92954 0.92438 1.81126 1.10820 1.12128 1.09876 1.20702 0.98735 0.91791 0.98257 1.19456 1.00944 0.93394 0.97158 1.20673 0.99345 0.97591 0.98595 0.93247 0.93369 0.93777 0.92987 0.92217 0.93730 0.94244 0.93512 0.95245 0.87857 0.84776 0.86948 0.86874 0.92250 0.92631 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 37.16 0.37 -1.52 16 2 C -0.14 -2.26 6.24 -26.73 -0.17 -2.42 16 3 C 0.15 2.60 4.60 -4.04 -0.02 2.58 16 4 N -0.60 -12.52 1.37 -174.60 -0.24 -12.75 16 5 C -0.26 -6.11 9.54 -15.06 -0.14 -6.25 16 6 H 0.07 1.77 7.92 -52.49 -0.42 1.35 16 7 C 0.00 0.10 4.89 -17.43 -0.09 0.02 16 8 N -0.89 -22.18 9.07 55.49 0.50 -21.68 16 9 Si 0.89 20.21 29.61 -169.99 -5.03 15.17 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.20 3.96 4.06 -5.19 -0.02 3.94 16 14 C 0.03 0.55 4.23 -104.53 -0.44 0.11 16 15 C -0.08 -1.52 8.68 -39.64 -0.34 -1.86 16 16 C -0.08 -1.48 9.76 -39.17 -0.38 -1.86 16 17 C -0.08 -1.32 5.73 -106.93 -0.61 -1.93 16 18 C 0.28 4.85 15.33 -22.48 -0.34 4.51 16 19 N -0.46 -8.67 18.54 41.82 0.78 -7.90 16 20 C -0.07 -1.23 9.40 -39.17 -0.37 -1.60 16 21 C -0.11 -1.88 5.87 -104.68 -0.61 -2.50 16 22 C -0.11 -1.53 9.55 36.01 0.34 -1.19 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 29 H 0.04 0.66 8.04 -51.93 -0.42 0.24 16 30 H 0.25 6.42 8.31 -40.82 -0.34 6.08 16 31 H 0.03 0.54 8.11 -51.93 -0.42 0.12 16 32 H 0.10 2.34 5.42 -51.93 -0.28 2.05 16 33 H 0.13 2.82 6.10 -52.48 -0.32 2.50 16 34 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.72 8.07 -51.93 -0.42 0.30 16 38 H 0.07 1.13 6.67 -51.93 -0.35 0.78 16 LS Contribution 319.39 15.07 4.81 4.81 Total: -1.00 -25.24 319.39 -7.57 -32.81 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -5.56 Total: -0.49 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -2.83 Total: -9.98 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 1.04 Total: -42.33 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -25.24 -7.57 -32.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165424099.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.729 kcal (2) G-P(sol) polarization free energy of solvation -25.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds