Wall clock time and date at job start Mon Mar 30 2020 07:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47312 * 2 1 4 4 N 1.46492 * 109.47252 * 180.02562 * 3 2 1 5 5 C 1.36942 * 120.00177 * 273.86613 * 4 3 2 6 6 H 1.07995 * 119.99873 * 13.38505 * 5 4 3 7 7 C 1.38814 * 120.00067 * 193.38253 * 5 4 3 8 8 N 1.31620 * 119.99608 * 22.47013 * 7 5 4 9 9 Si 1.86792 * 119.99917 * 202.46564 * 7 5 4 10 10 H 1.48495 * 109.47544 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47145 * 120.00357 * 9 7 5 12 12 H 1.48506 * 109.47219 * 240.00117 * 9 7 5 13 13 C 1.46508 * 120.00181 * 93.86376 * 4 3 2 14 14 C 1.50702 * 109.46879 * 84.43298 * 13 4 3 15 15 C 1.38385 * 119.84793 * 358.08344 * 14 13 4 16 16 C 1.37924 * 120.15458 * 179.97438 * 15 14 13 17 17 C 1.39653 * 119.84075 * 0.02562 * 16 15 14 18 18 C 1.43202 * 120.14849 * 179.97438 * 17 16 15 19 19 N 9.27878 * 110.87481 * 338.93381 * 2 1 3 20 20 C 1.39611 * 119.70193 * 0.27765 * 17 16 15 21 21 C 1.37969 * 119.84604 * 359.46156 * 20 17 16 22 22 C 1.50700 * 119.92521 * 180.23188 * 21 20 17 23 23 H 1.09004 * 109.46588 * 300.00034 * 1 2 3 24 24 H 1.08994 * 109.47218 * 59.99737 * 1 2 3 25 25 H 1.09000 * 109.46781 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47284 * 240.00192 * 2 1 3 27 27 H 1.09002 * 109.47533 * 120.00236 * 2 1 3 28 28 H 1.09001 * 109.46789 * 59.99889 * 3 2 1 29 29 H 1.09006 * 109.46895 * 300.00070 * 3 2 1 30 30 H 0.97004 * 119.99542 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.46758 * 324.43528 * 13 4 3 32 32 H 1.09002 * 109.47382 * 204.43419 * 13 4 3 33 33 H 1.08004 * 119.92521 * 359.97336 * 15 14 13 34 34 H 1.07997 * 120.08143 * 179.97438 * 16 15 14 35 35 H 1.08004 * 120.07626 * 179.72643 * 20 17 16 36 36 H 1.08995 * 109.47069 * 267.69621 * 22 21 20 37 37 H 1.09000 * 109.46647 * 27.69787 * 22 21 20 38 38 H 1.09004 * 109.46698 * 147.69089 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3624 1.1823 6 1 3.6726 1.0840 2.0884 7 6 5.5501 1.6389 1.2168 8 7 6.0946 2.3817 0.2766 9 14 6.6071 0.9568 2.5976 10 1 5.7611 0.1584 3.5206 11 1 7.6693 0.0905 2.0262 12 1 7.2316 2.0788 3.3436 13 6 4.2370 1.5282 -1.2668 14 6 4.3687 2.9732 -1.6741 15 6 3.7955 3.9632 -0.8954 16 6 3.9125 5.2877 -1.2620 17 6 4.6110 5.6285 -2.4223 18 6 4.7361 7.0015 -2.8093 19 7 4.8363 8.0903 -3.1163 20 6 5.1813 4.6241 -3.2066 21 6 5.0611 3.3036 -2.8252 22 6 5.6805 2.2184 -3.6677 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9564 -0.8900 30 1 7.0449 2.5752 0.3009 31 1 3.6944 0.9813 -2.0379 32 1 5.2290 1.0937 -1.1431 33 1 3.2553 3.6981 0.0014 34 1 3.4644 6.0593 -0.6536 35 1 5.7190 4.8805 -4.1075 36 1 4.9462 1.8514 -4.3847 37 1 6.5411 2.6203 -4.2024 38 1 6.0023 1.3988 -3.0252 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165424099.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:08 Heat of formation + Delta-G solvation = 57.144238 kcal Electronic energy + Delta-G solvation = -19145.626962 eV Core-core repulsion = 16374.198914 eV Total energy + Delta-G solvation = -2771.428049 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.44755 -38.11206 -37.18606 -34.65306 -33.71805 -32.72323 -31.46463 -28.19123 -27.31168 -27.17659 -24.26429 -22.71654 -22.36295 -21.49258 -18.96055 -18.60622 -16.92036 -16.43938 -16.20069 -15.74774 -15.39974 -15.09484 -14.99157 -14.55152 -14.32563 -14.22492 -13.83657 -13.70651 -13.65216 -13.20301 -13.11888 -12.81167 -12.74312 -12.49233 -12.38601 -12.11620 -12.09924 -11.97580 -11.77381 -11.69683 -11.49187 -11.23099 -10.42667 -9.39788 -9.06089 -8.71678 -7.71566 -5.05188 0.19243 0.79328 1.49757 1.57465 1.61972 1.68902 2.16773 2.60794 3.05676 3.23934 3.39844 3.71276 4.19817 4.24639 4.34289 4.43457 4.51904 4.62588 4.70465 4.76824 4.89672 4.96538 5.02310 5.05899 5.11462 5.22027 5.23980 5.31726 5.34222 5.49342 5.51968 5.60000 5.64857 5.72273 5.79749 5.85743 6.21576 6.32554 6.44150 6.54188 7.28295 8.00651 8.41190 9.28359 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.014911 B = 0.007555 C = 0.006090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.324235 B = 3705.206503 C = 4596.863520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.147 3.853 4 N -0.606 5.606 5 C -0.253 4.253 6 H 0.064 0.936 7 C -0.033 4.033 8 N -0.899 5.899 9 Si 0.939 3.061 10 H -0.279 1.279 11 H -0.296 1.296 12 H -0.305 1.305 13 C 0.203 3.797 14 C 0.014 3.986 15 C -0.092 4.092 16 C -0.085 4.085 17 C -0.076 4.076 18 C 0.291 3.709 19 N -0.481 5.481 20 C -0.069 4.069 21 C -0.112 4.112 22 C -0.102 4.102 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.040 0.960 28 H 0.037 0.963 29 H 0.051 0.949 30 H 0.244 0.756 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.141 0.859 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.899 -3.121 -6.201 9.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.175 4.175 3 C 0.022 3.978 4 N -0.327 5.327 5 C -0.383 4.383 6 H 0.082 0.918 7 C -0.230 4.230 8 N -0.545 5.545 9 Si 0.771 3.229 10 H -0.204 1.204 11 H -0.223 1.223 12 H -0.233 1.233 13 C 0.078 3.922 14 C 0.010 3.990 15 C -0.111 4.111 16 C -0.106 4.106 17 C -0.080 4.080 18 C -0.022 4.022 19 N -0.158 5.158 20 C -0.089 4.089 21 C -0.112 4.112 22 C -0.159 4.159 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.132 0.868 34 H 0.143 0.857 35 H 0.159 0.841 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.598 -1.402 -6.663 8.814 hybrid contribution 0.981 -0.519 1.422 1.804 sum -4.617 -1.921 -5.240 7.243 Atomic orbital electron populations 1.21665 0.94672 1.01708 1.01820 1.21972 0.95963 0.98865 1.00651 1.20962 0.82772 0.94837 0.99254 1.44202 1.00938 1.85201 1.02364 1.19271 0.91399 1.39215 0.88390 0.91819 1.25113 0.98561 0.99809 0.99514 1.70180 1.10877 1.37375 1.36034 0.85652 0.79450 0.77602 0.80234 1.20426 1.22316 1.23345 1.19780 0.96747 0.90440 0.85278 1.20823 0.89526 0.98387 0.90256 1.20778 1.00142 0.91363 0.98808 1.21103 0.97828 0.96849 0.94791 1.15821 1.08269 0.84354 0.99508 1.25938 0.91695 0.92686 0.91848 1.81149 1.11495 1.12586 1.10565 1.20988 0.97970 0.91146 0.98809 1.19752 1.00138 0.94586 0.96761 1.20696 1.00466 0.96288 0.98432 0.92929 0.92191 0.92327 0.93118 0.94087 0.94450 0.93077 0.94561 0.93517 0.90562 0.86824 0.85714 0.84148 0.89952 0.90830 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.91 71.98 0.71 -2.59 16 2 C -0.13 -4.11 6.24 30.60 0.19 -3.92 16 3 C 0.15 5.14 4.60 86.38 0.40 5.54 16 4 N -0.61 -25.51 1.37 -706.31 -0.97 -26.48 16 5 C -0.25 -12.19 9.54 84.03 0.80 -11.39 16 6 H 0.06 3.13 7.92 -2.91 -0.02 3.11 16 7 C -0.03 -1.65 4.89 84.86 0.41 -1.24 16 8 N -0.90 -45.21 9.07 21.65 0.20 -45.02 16 9 Si 0.94 42.16 29.61 68.60 2.03 44.19 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.31 -14.22 7.11 99.48 0.71 -13.51 16 13 C 0.20 8.10 4.06 85.63 0.35 8.45 16 14 C 0.01 0.52 4.23 -19.80 -0.08 0.44 16 15 C -0.09 -3.60 8.68 22.23 0.19 -3.41 16 16 C -0.09 -2.96 9.76 22.54 0.22 -2.74 16 17 C -0.08 -2.49 5.73 -21.36 -0.12 -2.61 16 18 C 0.29 9.68 15.33 88.34 1.35 11.04 16 19 N -0.48 -17.19 18.54 19.00 0.35 -16.84 16 20 C -0.07 -2.10 9.40 22.54 0.21 -1.89 16 21 C -0.11 -3.66 5.87 -19.90 -0.12 -3.78 16 22 C -0.10 -2.73 9.55 71.24 0.68 -2.05 16 23 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 24 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 25 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.04 1.34 8.07 -2.39 -0.02 1.32 16 29 H 0.05 1.66 8.04 -2.38 -0.02 1.64 16 30 H 0.24 12.50 8.31 -92.71 -0.77 11.73 16 31 H 0.05 1.66 8.11 -2.39 -0.02 1.64 16 32 H 0.08 3.48 5.42 -2.39 -0.01 3.47 16 33 H 0.11 4.85 6.10 -2.91 -0.02 4.84 16 34 H 0.12 3.92 8.06 -2.91 -0.02 3.89 16 35 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.07 1.69 8.07 -2.39 -0.02 1.67 16 38 H 0.06 1.72 6.67 -2.39 -0.02 1.71 16 Total: -1.00 -53.15 319.39 7.85 -45.29 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 1.04 Total: 8.99 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 5.20 Total: -10.14 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -0.42 Total: -88.33 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -53.15 7.85 -45.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165424099.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.437 kcal (2) G-P(sol) polarization free energy of solvation -53.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds