Wall clock time and date at job start Mon Mar 30 2020 06:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.52997 * 109.47127 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47452 * 59.99878 * 5 4 2 7 7 C 1.53006 * 109.46542 * 300.00026 * 6 5 4 8 8 H 1.09001 * 109.47369 * 299.99416 * 7 6 5 9 9 S 1.81409 * 109.46599 * 179.97438 * 7 6 5 10 10 O 1.42094 * 109.46862 * 298.61137 * 9 7 6 11 11 C 1.81397 * 102.99933 * 55.00125 * 9 7 6 12 12 C 1.52996 * 109.47089 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.47287 * 179.97438 * 12 11 9 14 14 C 1.50704 * 109.46985 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00303 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99637 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00198 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99622 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47502 * 90.00338 * 18 16 14 20 20 H 1.48507 * 109.46805 * 210.00028 * 18 16 14 21 21 H 1.48503 * 109.47321 * 329.99338 * 18 16 14 22 22 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 23 23 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 26 26 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 27 27 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 28 28 H 1.09001 * 109.47289 * 299.99953 * 5 4 2 29 29 H 1.09002 * 109.47153 * 179.97438 * 5 4 2 30 30 H 1.09000 * 109.47360 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.47061 * 59.99332 * 6 5 4 32 32 H 1.09000 * 109.47141 * 299.99553 * 11 9 7 33 33 H 1.09003 * 109.47682 * 59.99779 * 11 9 7 34 34 H 1.08999 * 109.47050 * 300.00307 * 12 11 9 35 35 H 1.09003 * 109.47474 * 59.99635 * 12 11 9 36 36 H 1.09000 * 109.47130 * 299.99723 * 13 12 11 37 37 H 1.08996 * 109.47102 * 60.00381 * 13 12 11 38 38 H 0.96995 * 119.99672 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.47103 * 300.00247 * 22 2 1 40 40 H 1.09001 * 109.47066 * 60.00169 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5700 -0.7206 -1.2497 6 6 4.0806 -1.4416 -0.0005 7 6 3.5705 -0.7203 1.2488 8 1 3.9335 0.3075 1.2487 9 16 4.1753 -1.5755 2.7299 10 8 3.6754 -2.9055 2.7462 11 6 5.9714 -1.6077 2.4777 12 6 6.6402 -2.3082 3.6621 13 6 8.1550 -2.3360 3.4491 14 6 8.8138 -3.0254 4.6161 15 1 8.2122 -3.4061 5.4282 16 6 10.1846 -3.1711 4.6464 17 7 10.9172 -2.7079 3.6573 18 14 11.0011 -4.0263 6.0925 19 1 11.1017 -5.4816 5.8146 20 1 12.3614 -3.4660 6.2952 21 1 10.1897 -3.8110 7.3175 22 6 2.0400 -0.7212 1.2491 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.6767 -1.7489 -1.2494 27 1 1.6767 -0.2073 -2.1392 28 1 3.9330 0.3072 -1.2498 29 1 3.9333 -1.2348 -2.1395 30 1 5.1706 -1.4408 -0.0005 31 1 3.7176 -2.4693 -0.0002 32 1 6.1997 -2.1485 1.5592 33 1 6.3460 -0.5870 2.4011 34 1 6.4119 -1.7672 4.5804 35 1 6.2658 -3.3290 3.7393 36 1 8.3830 -2.8773 2.5309 37 1 8.5298 -1.3154 3.3719 38 1 11.8814 -2.8108 3.6785 39 1 1.6767 -0.2074 2.1392 40 1 1.6768 -1.7489 1.2491 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000203471663.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:59 Heat of formation + Delta-G solvation = -86.953968 kcal Electronic energy + Delta-G solvation = -17312.633385 eV Core-core repulsion = 14638.107969 eV Total energy + Delta-G solvation = -2674.525416 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = -0.06 seconds Orbital eigenvalues (eV) -38.77013 -35.34367 -34.42106 -32.85884 -31.98137 -30.96531 -27.60635 -26.52030 -23.62748 -22.71898 -21.59075 -20.25424 -19.90034 -17.25118 -16.28314 -15.77911 -15.02288 -14.84081 -14.76696 -14.46100 -14.43153 -14.08869 -13.56050 -12.93302 -12.60545 -12.53029 -12.34201 -12.03547 -11.89359 -11.71023 -11.51946 -11.21708 -11.10754 -10.93230 -10.83564 -10.72636 -10.61256 -10.58384 -10.26927 -9.91302 -9.74631 -9.19292 -8.94317 -8.34836 -7.86770 -5.99807 -4.02285 1.79545 2.91242 3.33094 3.39014 3.42721 4.05382 4.46811 4.47508 4.49873 4.68038 4.91998 4.99678 5.16083 5.28431 5.33959 5.35904 5.43330 5.45758 5.50456 5.55513 5.61897 5.66416 5.78096 5.83459 5.94511 5.99530 6.03322 6.07870 6.11184 6.26087 6.30975 6.54935 6.74040 7.07199 7.67079 7.80074 7.99916 8.42002 9.04793 9.61869 11.11489 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.049553 B = 0.003660 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.912394 B = 7648.542018 C = 8003.486828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 H 0.072 0.928 4 C -0.114 4.114 5 C -0.114 4.114 6 C -0.116 4.116 7 C -0.412 4.412 8 H 0.119 0.881 9 S 1.222 4.778 10 O -0.850 6.850 11 C -0.430 4.430 12 C -0.093 4.093 13 C 0.027 3.973 14 C -0.522 4.522 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.090 4.090 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.014 0.986 37 H 0.019 0.981 38 H 0.260 0.740 39 H 0.071 0.929 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.650 9.835 -6.976 22.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 H 0.090 0.910 4 C -0.152 4.152 5 C -0.153 4.153 6 C -0.154 4.154 7 C -0.528 4.528 8 H 0.137 0.863 9 S 1.423 4.577 10 O -0.845 6.845 11 C -0.568 4.568 12 C -0.132 4.132 13 C -0.011 4.011 14 C -0.560 4.560 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.128 4.128 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.129 0.871 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.032 0.968 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.028 9.469 -6.269 22.159 hybrid contribution 1.289 -1.523 -1.298 2.381 sum -17.739 7.946 -7.567 20.859 Atomic orbital electron populations 1.21848 0.95352 1.01822 1.01582 1.21097 0.95089 0.99603 0.94825 0.91005 1.21592 0.95632 1.00614 0.97358 1.21492 0.95582 1.00694 0.97490 1.21615 1.00553 0.99275 0.93936 1.27662 1.02580 1.09684 1.12865 0.86280 1.70181 0.87334 0.98990 1.01147 1.93095 1.74311 1.36739 1.80350 1.27655 1.16215 1.07059 1.05905 1.21304 0.99667 0.98496 0.93710 1.19089 0.87759 0.97282 0.96999 1.21289 0.91830 1.37207 1.05716 0.92545 1.25032 0.97551 0.95729 0.96178 1.69964 1.05573 1.46455 1.31608 0.86583 0.78716 0.79740 0.82920 1.20703 1.21208 1.19749 1.21259 0.91985 1.01398 0.98158 0.92523 0.92773 0.92817 0.92208 0.92226 0.91809 0.92223 0.91315 0.91763 0.89965 0.87056 0.92214 0.92908 0.96804 0.96294 0.93011 0.91041 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 2 C -0.09 -0.75 2.72 -90.62 -0.25 -1.00 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.11 -1.07 5.20 -26.73 -0.14 -1.21 16 5 C -0.11 -1.16 5.92 -26.73 -0.16 -1.32 16 6 C -0.12 -1.41 4.95 -26.73 -0.13 -1.54 16 7 C -0.41 -4.36 2.71 -26.70 -0.07 -4.43 16 8 H 0.12 0.97 8.14 -51.92 -0.42 0.55 16 9 S 1.22 15.95 12.67 -107.50 -1.36 14.59 16 10 O -0.85 -16.46 18.12 -35.23 -0.64 -17.09 16 11 C -0.43 -6.91 5.32 37.16 0.20 -6.71 16 12 C -0.09 -1.93 5.16 -26.73 -0.14 -2.07 16 13 C 0.03 0.71 4.97 -27.88 -0.14 0.57 16 14 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 18 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.09 -0.89 4.48 -26.71 -0.12 -1.01 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.87 6.51 -51.93 -0.34 0.53 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 1.43 6.90 -51.92 -0.36 1.07 16 33 H 0.11 1.52 8.14 -51.92 -0.42 1.09 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 328.03 15.07 4.94 4.94 Total: -1.00 -35.08 328.03 -9.78 -44.86 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -7.42 Total: -4.39 kcal Atomic # 6 Polarization: -32.30 SS G_CDS: -1.02 Total: -33.31 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.74 Total: -26.48 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.64 Total: -17.09 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 15.95 SS G_CDS: -1.36 Total: 14.59 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.08 -9.78 -44.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203471663.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.090 kcal (2) G-P(sol) polarization free energy of solvation -35.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.06 seconds