Wall clock time and date at job start Mon Mar 30 2020 06:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46908 * 2 1 4 4 C 1.52999 * 109.47173 * 119.99634 * 2 1 3 5 5 C 1.53002 * 109.47173 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.46886 * 300.00236 * 5 4 2 7 7 C 1.52997 * 109.47429 * 60.00300 * 6 5 4 8 8 H 1.08999 * 109.47214 * 59.99349 * 7 6 5 9 9 S 1.81395 * 109.47168 * 180.02562 * 7 6 5 10 10 O 1.42105 * 109.46783 * 188.61010 * 9 7 6 11 11 C 1.81400 * 103.00021 * 304.99482 * 9 7 6 12 12 C 1.52991 * 109.47338 * 180.02562 * 11 9 7 13 13 C 1.53010 * 109.47204 * 180.02562 * 12 11 9 14 14 C 1.50703 * 109.47130 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99966 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00061 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99861 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00338 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46902 * 59.99596 * 18 16 14 20 20 H 1.48493 * 109.47239 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46906 * 300.00546 * 18 16 14 22 22 C 1.53002 * 109.46841 * 299.99727 * 7 6 5 23 23 H 1.08998 * 109.47083 * 300.00581 * 1 2 3 24 24 H 1.09000 * 109.46801 * 59.99929 * 1 2 3 25 25 H 1.08999 * 109.46908 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46688 * 60.00060 * 4 2 1 27 27 H 1.09001 * 109.47344 * 300.00504 * 4 2 1 28 28 H 1.09000 * 109.46801 * 180.02562 * 5 4 2 29 29 H 1.08999 * 109.46908 * 60.00365 * 5 4 2 30 30 H 1.08999 * 109.46753 * 299.99536 * 6 5 4 31 31 H 1.09007 * 109.46441 * 180.02562 * 6 5 4 32 32 H 1.09000 * 109.47191 * 300.00533 * 11 9 7 33 33 H 1.09007 * 109.47076 * 59.99824 * 11 9 7 34 34 H 1.09004 * 109.46932 * 299.99793 * 12 11 9 35 35 H 1.08997 * 109.47513 * 60.00272 * 12 11 9 36 36 H 1.09004 * 109.46685 * 299.99550 * 13 12 11 37 37 H 1.08997 * 109.46985 * 59.99554 * 13 12 11 38 38 H 0.96997 * 120.00239 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.47266 * 179.97438 * 22 7 6 40 40 H 1.09001 * 109.47598 * 300.00080 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7217 1.2489 6 6 4.0795 -1.4434 -0.0003 7 6 3.5695 -0.7222 -1.2496 8 1 3.9332 0.3054 -1.2498 9 16 4.1729 -1.5783 -2.7306 10 8 3.8702 -0.8027 -3.8823 11 6 5.9691 -1.6118 -2.4793 12 6 6.6368 -2.3131 -3.6637 13 6 8.1519 -2.3419 -3.4514 14 6 8.8095 -3.0334 -4.6178 15 1 8.2072 -3.4145 -5.4292 16 6 10.1802 -3.1793 -4.6491 17 7 10.9136 -2.7156 -3.6608 18 14 10.9954 -4.0370 -6.0945 19 1 10.6842 -3.3011 -7.3464 20 1 12.4658 -4.0637 -5.8891 21 1 10.4840 -5.4273 -6.1977 22 6 2.0395 -0.7216 -1.2493 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6766 -1.7489 1.2493 27 1 1.6766 -0.2073 2.1393 28 1 3.9333 -1.2359 2.1388 29 1 3.9337 0.3058 1.2487 30 1 3.7158 -2.4709 0.0001 31 1 5.1695 -1.4441 -0.0002 32 1 6.3444 -0.5913 -2.4031 33 1 6.1974 -2.1523 -1.5606 34 1 6.2616 -3.3337 -3.7402 35 1 6.4086 -1.7722 -4.5820 36 1 8.5274 -1.3215 -3.3746 37 1 8.3798 -2.8831 -2.5331 38 1 11.8779 -2.8180 -3.6830 39 1 1.6762 -0.2074 -2.1390 40 1 1.6757 -1.7491 -1.2490 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000203471679.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:12 Heat of formation + Delta-G solvation = -87.246082 kcal Electronic energy + Delta-G solvation = -17256.117892 eV Core-core repulsion = 14581.579809 eV Total energy + Delta-G solvation = -2674.538083 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.77796 -35.39230 -34.43185 -32.84290 -31.98256 -30.97730 -27.60681 -26.50613 -23.64328 -22.73014 -21.61007 -20.28586 -19.93968 -17.17698 -16.26991 -15.83035 -15.12114 -14.83033 -14.68364 -14.43686 -14.37273 -14.18566 -13.51914 -13.25393 -12.60552 -12.45839 -12.19713 -12.11419 -11.90693 -11.68876 -11.45507 -11.36473 -11.13263 -10.91445 -10.83437 -10.74816 -10.64098 -10.57651 -10.22416 -9.88387 -9.75709 -9.20140 -8.95665 -8.34496 -7.89836 -5.99629 -4.02278 1.74295 2.89966 3.34573 3.38500 3.41634 4.02215 4.44972 4.46855 4.54093 4.66780 4.89104 4.99370 5.15831 5.28400 5.32415 5.35914 5.43414 5.45385 5.48943 5.54580 5.60837 5.65530 5.76210 5.83514 5.90539 5.99799 6.03440 6.07402 6.12049 6.25827 6.28624 6.54196 6.73286 7.06677 7.66700 7.79859 7.99881 8.41911 9.04536 9.61847 11.11639 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.046538 B = 0.003677 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.509129 B = 7612.183253 C = 8060.646587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 H 0.066 0.934 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.096 4.096 7 C -0.412 4.412 8 H 0.085 0.915 9 S 1.220 4.780 10 O -0.854 6.854 11 C -0.429 4.429 12 C -0.093 4.093 13 C 0.028 3.972 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.087 4.087 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.014 0.986 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.064 0.936 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.393 0.964 11.809 22.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 H 0.084 0.916 4 C -0.150 4.150 5 C -0.155 4.155 6 C -0.134 4.134 7 C -0.528 4.528 8 H 0.104 0.896 9 S 1.422 4.578 10 O -0.849 6.849 11 C -0.568 4.568 12 C -0.132 4.132 13 C -0.011 4.011 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.125 4.125 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.132 0.868 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.032 0.968 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.761 0.648 11.073 22.661 hybrid contribution 1.568 1.863 -0.519 2.490 sum -18.193 2.512 10.554 21.182 Atomic orbital electron populations 1.21845 0.95282 1.01899 1.01549 1.21113 0.95143 0.99594 0.94938 0.91581 1.21590 0.95643 1.00723 0.97073 1.21523 0.95568 1.00756 0.97698 1.21288 1.00780 0.99302 0.92068 1.27543 1.02675 1.09224 1.13376 0.89613 1.70207 0.90041 1.14652 0.82881 1.93094 1.79612 1.73142 1.39074 1.27656 1.16192 1.06161 1.06746 1.21312 0.99719 0.98367 0.93805 1.19087 0.87711 0.97133 0.97153 1.21250 0.91872 1.37212 1.05798 0.92586 1.25026 0.97522 0.95757 0.96146 1.69955 1.05601 1.46431 1.31632 0.86640 0.78169 0.80187 0.82925 1.20248 1.21297 1.20101 1.21224 0.91753 1.01457 0.98115 0.92812 0.92767 0.92468 0.91648 0.92333 0.91685 0.92329 0.90351 0.90949 0.90234 0.86814 0.92140 0.92918 0.96808 0.96265 0.92946 0.91767 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.19 37.16 0.34 -0.76 16 2 C -0.09 -0.76 2.72 -90.62 -0.25 -1.01 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 4 C -0.11 -0.87 5.20 -26.73 -0.14 -1.01 16 5 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 6 C -0.10 -0.86 4.95 -26.73 -0.13 -0.99 16 7 C -0.41 -4.52 2.71 -26.73 -0.07 -4.59 16 8 H 0.09 1.08 8.14 -51.92 -0.42 0.66 16 9 S 1.22 16.40 12.66 -107.50 -1.36 15.04 16 10 O -0.85 -17.09 18.14 -35.23 -0.64 -17.73 16 11 C -0.43 -6.98 5.32 37.15 0.20 -6.79 16 12 C -0.09 -1.94 5.16 -26.73 -0.14 -2.08 16 13 C 0.03 0.72 4.97 -27.88 -0.14 0.58 16 14 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 18 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C -0.09 -0.85 4.49 -26.73 -0.12 -0.97 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.67 6.51 -51.93 -0.34 0.34 16 32 H 0.08 1.40 8.14 -51.92 -0.42 0.98 16 33 H 0.11 1.56 6.90 -51.92 -0.36 1.20 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 328.04 15.07 4.94 4.94 Total: -1.00 -35.35 328.04 -9.78 -45.13 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -7.42 Total: -5.18 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: -1.02 Total: -32.59 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 0.74 Total: -26.49 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.64 Total: -17.73 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 16.40 SS G_CDS: -1.36 Total: 15.04 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.35 -9.78 -45.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203471679.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.117 kcal (2) G-P(sol) polarization free energy of solvation -35.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds