Wall clock time and date at job start Mon Mar 30 2020 06:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46908 * 2 1 4 4 C 1.52999 * 109.47173 * 119.99634 * 2 1 3 5 5 C 1.53002 * 109.47173 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.46886 * 300.00236 * 5 4 2 7 7 C 1.52997 * 109.47429 * 60.00300 * 6 5 4 8 8 H 1.08999 * 109.47214 * 59.99349 * 7 6 5 9 9 S 1.81395 * 109.47168 * 180.02562 * 7 6 5 10 10 O 1.42105 * 109.46783 * 188.61010 * 9 7 6 11 11 C 1.81400 * 103.00021 * 304.99482 * 9 7 6 12 12 C 1.52991 * 109.47338 * 180.02562 * 11 9 7 13 13 C 1.53010 * 109.47204 * 180.02562 * 12 11 9 14 14 C 1.50703 * 109.47130 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99966 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00061 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99861 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00338 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46902 * 59.99596 * 18 16 14 20 20 H 1.48493 * 109.47239 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46906 * 300.00546 * 18 16 14 22 22 C 1.53002 * 109.46841 * 299.99727 * 7 6 5 23 23 H 1.08998 * 109.47083 * 300.00581 * 1 2 3 24 24 H 1.09000 * 109.46801 * 59.99929 * 1 2 3 25 25 H 1.08999 * 109.46908 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46688 * 60.00060 * 4 2 1 27 27 H 1.09001 * 109.47344 * 300.00504 * 4 2 1 28 28 H 1.09000 * 109.46801 * 180.02562 * 5 4 2 29 29 H 1.08999 * 109.46908 * 60.00365 * 5 4 2 30 30 H 1.08999 * 109.46753 * 299.99536 * 6 5 4 31 31 H 1.09007 * 109.46441 * 180.02562 * 6 5 4 32 32 H 1.09000 * 109.47191 * 300.00533 * 11 9 7 33 33 H 1.09007 * 109.47076 * 59.99824 * 11 9 7 34 34 H 1.09004 * 109.46932 * 299.99793 * 12 11 9 35 35 H 1.08997 * 109.47513 * 60.00272 * 12 11 9 36 36 H 1.09004 * 109.46685 * 299.99550 * 13 12 11 37 37 H 1.08997 * 109.46985 * 59.99554 * 13 12 11 38 38 H 0.96997 * 120.00239 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.47266 * 179.97438 * 22 7 6 40 40 H 1.09001 * 109.47598 * 300.00080 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7217 1.2489 6 6 4.0795 -1.4434 -0.0003 7 6 3.5695 -0.7222 -1.2496 8 1 3.9332 0.3054 -1.2498 9 16 4.1729 -1.5783 -2.7306 10 8 3.8702 -0.8027 -3.8823 11 6 5.9691 -1.6118 -2.4793 12 6 6.6368 -2.3131 -3.6637 13 6 8.1519 -2.3419 -3.4514 14 6 8.8095 -3.0334 -4.6178 15 1 8.2072 -3.4145 -5.4292 16 6 10.1802 -3.1793 -4.6491 17 7 10.9136 -2.7156 -3.6608 18 14 10.9954 -4.0370 -6.0945 19 1 10.6842 -3.3011 -7.3464 20 1 12.4658 -4.0637 -5.8891 21 1 10.4840 -5.4273 -6.1977 22 6 2.0395 -0.7216 -1.2493 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6766 -1.7489 1.2493 27 1 1.6766 -0.2073 2.1393 28 1 3.9333 -1.2359 2.1388 29 1 3.9337 0.3058 1.2487 30 1 3.7158 -2.4709 0.0001 31 1 5.1695 -1.4441 -0.0002 32 1 6.3444 -0.5913 -2.4031 33 1 6.1974 -2.1523 -1.5606 34 1 6.2616 -3.3337 -3.7402 35 1 6.4086 -1.7722 -4.5820 36 1 8.5274 -1.3215 -3.3746 37 1 8.3798 -2.8831 -2.5331 38 1 11.8779 -2.8180 -3.6830 39 1 1.6762 -0.2074 -2.1390 40 1 1.6757 -1.7491 -1.2490 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000203471679.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:10 Heat of formation + Delta-G solvation = -109.664894 kcal Electronic energy + Delta-G solvation = -17257.090044 eV Core-core repulsion = 14581.579809 eV Total energy + Delta-G solvation = -2675.510235 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.50213 -36.82745 -36.33354 -34.09175 -33.47885 -31.73090 -29.46629 -27.24582 -25.42069 -23.74044 -22.32594 -22.02326 -20.69004 -18.66992 -18.15765 -16.85791 -16.49712 -16.29964 -15.88151 -15.63642 -15.37974 -15.18174 -14.39113 -14.36504 -14.26979 -13.82330 -13.60077 -13.19041 -13.04504 -12.77831 -12.69293 -12.56441 -12.41694 -12.37333 -12.23472 -11.94901 -11.77610 -11.61405 -11.46930 -11.32143 -11.24669 -10.93963 -10.56891 -10.42111 -9.15364 -8.21769 -6.33562 0.58447 1.39248 1.42728 1.50648 1.74042 2.40244 2.84391 3.10978 3.69099 3.76124 3.98369 4.03313 4.13168 4.18944 4.33128 4.43227 4.56962 4.60016 4.63985 4.70288 4.79618 4.82939 4.90721 4.98827 5.09202 5.12886 5.17073 5.17823 5.24523 5.34148 5.40598 5.43509 5.45900 5.48515 5.62993 5.68361 5.82048 6.22019 6.82882 7.35861 8.89699 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.046538 B = 0.003677 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.509129 B = 7612.183253 C = 8060.646587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 H 0.048 0.952 4 C -0.110 4.110 5 C -0.118 4.118 6 C -0.101 4.101 7 C -0.398 4.398 8 H 0.065 0.935 9 S 1.282 4.718 10 O -0.921 6.921 11 C -0.433 4.433 12 C -0.088 4.088 13 C 0.029 3.971 14 C -0.550 4.550 15 H 0.060 0.940 16 C 0.000 4.000 17 N -0.933 5.933 18 Si 0.966 3.034 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.259 1.259 22 C -0.092 4.092 23 H 0.061 0.939 24 H 0.046 0.954 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.043 0.957 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.144 0.856 34 H 0.087 0.913 35 H 0.028 0.972 36 H -0.022 1.022 37 H 0.009 0.991 38 H 0.264 0.736 39 H 0.044 0.956 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.762 -0.843 12.808 24.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.067 0.933 4 C -0.147 4.147 5 C -0.157 4.157 6 C -0.139 4.139 7 C -0.517 4.517 8 H 0.084 0.916 9 S 1.486 4.514 10 O -0.917 6.917 11 C -0.570 4.570 12 C -0.126 4.126 13 C -0.010 4.010 14 C -0.588 4.588 15 H 0.079 0.921 16 C -0.198 4.198 17 N -0.574 5.574 18 Si 0.790 3.210 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.184 1.184 22 C -0.131 4.131 23 H 0.080 0.920 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.129 0.871 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.162 0.838 34 H 0.105 0.895 35 H 0.047 0.953 36 H -0.004 1.004 37 H 0.028 0.972 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -21.115 -1.169 12.044 24.336 hybrid contribution 1.939 2.500 -0.716 3.244 sum -19.176 1.330 11.328 22.311 Atomic orbital electron populations 1.21832 0.94107 1.02813 1.01647 1.21105 0.96124 0.98649 0.94891 0.93340 1.21594 0.94896 1.01664 0.96562 1.21542 0.96261 1.00012 0.97839 1.21440 1.00741 1.00844 0.90900 1.27421 1.03801 1.07990 1.12515 0.91650 1.69357 0.86475 1.13656 0.81888 1.92970 1.80061 1.75070 1.43579 1.27678 1.18432 1.04750 1.06185 1.21124 0.96588 1.00243 0.94691 1.19009 0.91343 0.94472 0.96143 1.21731 0.92726 1.37618 1.06731 0.92134 1.25998 0.98247 0.96388 0.99181 1.70085 1.06015 1.47527 1.33724 0.85496 0.77112 0.79526 0.78914 1.19795 1.20663 1.18392 1.21343 0.90375 1.03248 0.98089 0.91995 0.93486 0.91121 0.89856 0.91530 0.90107 0.93837 0.87118 0.91284 0.92345 0.83757 0.89489 0.95305 1.00377 0.97220 0.92690 0.93716 0.87813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.19 71.98 0.66 -1.18 16 2 C -0.09 -1.36 2.72 -10.79 -0.03 -1.38 16 3 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.11 -1.33 5.20 30.59 0.16 -1.18 16 5 C -0.12 -1.67 5.92 30.60 0.18 -1.49 16 6 C -0.10 -1.53 4.95 30.59 0.15 -1.38 16 7 C -0.40 -8.25 2.71 30.59 0.08 -8.16 16 8 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 9 S 1.28 33.59 12.66 -56.49 -0.72 32.87 16 10 O -0.92 -37.58 18.14 -148.98 -2.70 -40.28 16 11 C -0.43 -14.11 5.32 71.98 0.38 -13.72 16 12 C -0.09 -3.72 5.16 30.59 0.16 -3.57 16 13 C 0.03 1.54 4.97 29.85 0.15 1.69 16 14 C -0.55 -32.18 9.11 25.60 0.23 -31.94 16 15 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 16 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 17 N -0.93 -57.58 13.29 21.45 0.28 -57.30 16 18 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 22 C -0.09 -1.63 4.49 30.60 0.14 -1.50 16 23 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.12 6.51 -2.38 -0.02 1.11 16 32 H 0.06 2.13 8.14 -2.39 -0.02 2.12 16 33 H 0.14 3.74 6.90 -2.39 -0.02 3.72 16 34 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 35 H 0.03 1.32 8.14 -2.39 -0.02 1.31 16 36 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 37 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 39 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -78.85 328.04 2.59 -76.26 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: 0.97 Total: 4.89 kcal Atomic # 6 Polarization: -66.10 SS G_CDS: 2.73 Total: -63.37 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.28 Total: -57.30 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -2.70 Total: -40.28 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 16 Polarization: 33.59 SS G_CDS: -0.72 Total: 32.87 kcal Total: -78.85 2.59 -76.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203471679.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.402 kcal (2) G-P(sol) polarization free energy of solvation -78.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds