Wall clock time and date at job start Mon Mar 30 2020 06:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46622 * 2 1 4 4 H 1.09002 * 109.47250 * 54.36351 * 3 2 1 5 5 C 1.50707 * 109.46825 * 174.36146 * 3 2 1 6 6 H 1.08005 * 119.99556 * 114.98655 * 5 3 2 7 7 C 1.37878 * 120.00167 * 294.97918 * 5 3 2 8 8 N 1.31511 * 119.99739 * 353.88056 * 7 5 3 9 9 Si 1.86797 * 119.99891 * 173.87341 * 7 5 3 10 10 H 1.48500 * 109.46987 * 180.02562 * 9 7 5 11 11 H 1.48496 * 109.46897 * 60.00366 * 9 7 5 12 12 H 1.48501 * 109.47102 * 300.00347 * 9 7 5 13 13 S 1.81398 * 109.47319 * 294.36161 * 3 2 1 14 14 O 1.42100 * 109.47096 * 300.48194 * 13 3 2 15 15 C 1.81401 * 103.00118 * 184.09262 * 13 3 2 16 16 H 1.09004 * 109.46915 * 64.18991 * 15 13 3 17 17 C 1.53005 * 109.47142 * 304.19279 * 15 13 3 18 18 C 1.52991 * 109.46992 * 180.02562 * 17 15 13 19 19 C 1.52997 * 109.47581 * 59.99765 * 18 17 15 20 20 C 1.52996 * 109.47304 * 300.00135 * 19 18 17 21 21 H 1.08998 * 109.47374 * 179.97438 * 20 19 18 22 22 C 1.53003 * 109.47021 * 299.99570 * 20 19 18 23 23 C 1.52995 * 109.47179 * 184.19211 * 15 13 3 24 24 H 1.09008 * 109.46912 * 185.21003 * 1 2 3 25 25 H 1.08994 * 109.47275 * 305.19865 * 1 2 3 26 26 H 1.08992 * 109.47445 * 65.20937 * 1 2 3 27 27 H 1.09000 * 109.47297 * 240.00304 * 2 1 3 28 28 H 1.09001 * 109.47276 * 119.99921 * 2 1 3 29 29 H 0.96996 * 120.00518 * 356.74430 * 8 7 5 30 30 H 1.08999 * 109.46563 * 299.99874 * 17 15 13 31 31 H 1.09000 * 109.47234 * 59.99485 * 17 15 13 32 32 H 1.08999 * 109.47349 * 299.99375 * 18 17 15 33 33 H 1.09006 * 109.47333 * 179.97438 * 18 17 15 34 34 H 1.09005 * 109.47783 * 179.97438 * 19 18 17 35 35 H 1.09004 * 109.47053 * 59.99940 * 19 18 17 36 36 H 1.08997 * 109.47125 * 179.97438 * 22 20 19 37 37 H 1.08990 * 109.47199 * 299.99985 * 22 20 19 38 38 H 1.09000 * 109.46662 * 60.00017 * 22 20 19 39 39 H 1.09002 * 109.47445 * 299.99756 * 23 15 13 40 40 H 1.09004 * 109.47376 * 60.00063 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5964 1.9847 0.8352 5 6 3.5405 1.4449 0.1396 6 1 4.1572 1.8129 -0.6671 7 6 4.1259 0.9775 1.2971 8 7 3.3761 0.6425 2.3243 9 14 5.9840 0.8198 1.4061 10 1 6.3587 0.2975 2.7448 11 1 6.6066 2.1524 1.2021 12 1 6.4637 -0.1165 0.3580 13 16 1.5763 2.2478 -1.5579 14 8 2.1452 1.5346 -2.6474 15 6 2.3628 3.8770 -1.4251 16 1 3.4458 3.7564 -1.3972 17 6 1.8933 4.5670 -0.1426 18 6 2.5562 5.9413 -0.0309 19 6 2.1685 6.7944 -1.2403 20 6 2.6379 6.1046 -2.5227 21 1 2.3613 6.7121 -3.3843 22 6 4.1581 5.9359 -2.4839 23 6 1.9756 4.7304 -2.6344 24 1 -0.3633 -1.0235 0.0933 25 1 -0.3633 0.5923 0.8397 26 1 -0.3634 0.4309 -0.9329 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.4152 0.7686 2.2850 30 1 0.8104 4.6875 -0.1706 31 1 2.1691 3.9589 0.7189 32 1 3.6392 5.8212 -0.0032 33 1 2.2214 6.4330 0.8825 34 1 2.6404 7.7738 -1.1606 35 1 1.0855 6.9146 -1.2680 36 1 4.4925 5.4440 -3.3973 37 1 4.6304 6.9150 -2.4043 38 1 4.4343 5.3281 -1.6223 39 1 2.3101 4.2390 -3.5481 40 1 0.8926 4.8510 -2.6623 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218013169.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:48 Heat of formation + Delta-G solvation = -81.428373 kcal Electronic energy + Delta-G solvation = -18730.999276 eV Core-core repulsion = 16056.713468 eV Total energy + Delta-G solvation = -2674.285808 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.62141 -35.10824 -34.55317 -31.71692 -31.55949 -30.49225 -27.35533 -26.44681 -23.25974 -22.42673 -21.86243 -20.44044 -18.38089 -17.24920 -16.57962 -15.70569 -14.98285 -14.33928 -14.07145 -13.83140 -13.63844 -13.54173 -13.04987 -12.71400 -12.66103 -12.28619 -12.19149 -11.76566 -11.50220 -11.32201 -11.20752 -10.86197 -10.82059 -10.77780 -10.69138 -10.42690 -10.32561 -10.15275 -10.04365 -9.80150 -9.65884 -8.81738 -8.57922 -8.40924 -7.17300 -6.39602 -4.19445 2.67587 3.37196 3.41356 3.57772 3.72505 4.45463 4.75848 4.92447 5.00998 5.08994 5.27847 5.49526 5.53903 5.60091 5.68272 5.79772 5.87244 5.90362 5.94096 5.97346 6.06122 6.07793 6.11928 6.18269 6.23721 6.42128 6.47331 6.47940 6.57033 6.59682 6.64756 6.77317 6.82226 6.85475 7.16350 7.37945 7.88910 8.27540 8.72514 9.52012 10.93490 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.017789 B = 0.008988 C = 0.007202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.586638 B = 3114.499571 C = 3886.717099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.108 4.108 3 C -0.243 4.243 4 H 0.071 0.929 5 C -0.593 4.593 6 H 0.046 0.954 7 C 0.034 3.966 8 N -0.901 5.901 9 Si 1.057 2.943 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.288 1.288 13 S 1.190 4.810 14 O -0.871 6.871 15 C -0.394 4.394 16 H 0.097 0.903 17 C -0.089 4.089 18 C -0.117 4.117 19 C -0.111 4.111 20 C -0.085 4.085 21 H 0.063 0.937 22 C -0.153 4.153 23 C -0.088 4.088 24 H 0.046 0.954 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.274 0.726 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.886 10.453 -4.309 13.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.147 4.147 3 C -0.363 4.363 4 H 0.089 0.911 5 C -0.632 4.632 6 H 0.064 0.936 7 C -0.173 4.173 8 N -0.536 5.536 9 Si 0.885 3.115 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.214 1.214 13 S 1.394 4.606 14 O -0.866 6.866 15 C -0.511 4.511 16 H 0.116 0.884 17 C -0.127 4.127 18 C -0.155 4.155 19 C -0.148 4.148 20 C -0.104 4.104 21 H 0.082 0.918 22 C -0.210 4.210 23 C -0.127 4.127 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.203 9.579 -4.106 12.128 hybrid contribution 1.222 0.243 -0.756 1.458 sum -4.981 9.822 -4.862 12.039 Atomic orbital electron populations 1.21978 0.97988 1.00906 1.00698 1.21398 0.92518 0.98175 1.02651 1.24856 1.02839 0.99711 1.08929 0.91102 1.21577 0.89032 1.48395 1.04159 0.93576 1.25653 1.06470 0.92985 0.92161 1.70791 1.07912 1.43844 1.31081 0.83715 0.74867 0.76702 0.76211 1.20565 1.21403 1.21432 1.69184 1.17623 0.87297 0.86485 1.92998 1.80332 1.68637 1.44654 1.27285 1.10200 1.14522 0.99073 0.88423 1.21166 0.99418 0.95703 0.96421 1.21534 1.01166 0.95808 0.96999 1.21544 1.00521 0.97904 0.94866 1.21023 0.95673 0.96197 0.97518 0.91824 1.21949 0.95543 1.01121 1.02366 1.21213 1.00025 0.94771 0.96650 0.93514 0.92548 0.93732 0.93277 0.90659 0.91443 0.91833 0.90103 0.91858 0.92412 0.92747 0.92111 0.93222 0.93312 0.91531 0.92242 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.66 37.16 0.36 -2.37 16 2 C -0.11 -2.44 5.08 -26.73 -0.14 -2.58 16 3 C -0.24 -5.57 1.19 -27.88 -0.03 -5.60 16 4 H 0.07 1.58 6.54 -51.92 -0.34 1.24 16 5 C -0.59 -16.15 7.92 -34.44 -0.27 -16.43 16 6 H 0.05 1.33 7.04 -52.48 -0.37 0.96 16 7 C 0.03 0.95 5.21 -17.82 -0.09 0.86 16 8 N -0.90 -25.71 12.85 55.43 0.71 -24.99 16 9 Si 1.06 25.46 29.91 -169.99 -5.08 20.37 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 S 1.19 23.41 11.03 -107.50 -1.19 22.22 16 14 O -0.87 -22.38 18.09 -35.23 -0.64 -23.02 16 15 C -0.39 -6.93 1.98 -26.73 -0.05 -6.98 16 16 H 0.10 2.03 5.62 -51.92 -0.29 1.74 16 17 C -0.09 -1.37 4.98 -26.73 -0.13 -1.50 16 18 C -0.12 -1.61 5.65 -26.74 -0.15 -1.76 16 19 C -0.11 -1.33 5.45 -26.73 -0.15 -1.47 16 20 C -0.08 -1.11 3.19 -90.64 -0.29 -1.39 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 22 C -0.15 -2.15 8.50 37.16 0.32 -1.84 16 23 C -0.09 -1.31 4.73 -26.76 -0.13 -1.43 16 24 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.04 0.68 7.35 -51.93 -0.38 0.30 16 27 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 28 H 0.07 1.88 6.22 -51.93 -0.32 1.56 16 29 H 0.27 7.58 6.10 -40.82 -0.25 7.33 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.45 6.64 -51.93 -0.34 1.11 16 32 H 0.06 0.96 6.43 -51.93 -0.33 0.63 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 1.07 4.81 -51.93 -0.25 0.82 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 311.17 15.07 4.69 4.69 Total: -1.00 -33.23 311.17 -9.01 -42.24 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.75 Total: 0.99 kcal Atomic # 6 Polarization: -41.75 SS G_CDS: -0.76 Total: -42.51 kcal Atomic # 7 Polarization: -25.71 SS G_CDS: 0.71 Total: -24.99 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.64 Total: -23.02 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.08 Total: 20.37 kcal Atomic # 16 Polarization: 23.41 SS G_CDS: -1.19 Total: 22.22 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.23 -9.01 -42.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218013169.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.186 kcal (2) G-P(sol) polarization free energy of solvation -33.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds