Wall clock time and date at job start Mon Mar 30 2020 06:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46622 * 2 1 4 4 H 1.09002 * 109.47250 * 54.36351 * 3 2 1 5 5 C 1.50707 * 109.46825 * 174.36146 * 3 2 1 6 6 H 1.08005 * 119.99556 * 114.98655 * 5 3 2 7 7 C 1.37878 * 120.00167 * 294.97918 * 5 3 2 8 8 N 1.31511 * 119.99739 * 353.88056 * 7 5 3 9 9 Si 1.86797 * 119.99891 * 173.87341 * 7 5 3 10 10 H 1.48500 * 109.46987 * 180.02562 * 9 7 5 11 11 H 1.48496 * 109.46897 * 60.00366 * 9 7 5 12 12 H 1.48501 * 109.47102 * 300.00347 * 9 7 5 13 13 S 1.81398 * 109.47319 * 294.36161 * 3 2 1 14 14 O 1.42100 * 109.47096 * 300.48194 * 13 3 2 15 15 C 1.81401 * 103.00118 * 184.09262 * 13 3 2 16 16 H 1.09004 * 109.46915 * 64.18991 * 15 13 3 17 17 C 1.53005 * 109.47142 * 304.19279 * 15 13 3 18 18 C 1.52991 * 109.46992 * 180.02562 * 17 15 13 19 19 C 1.52997 * 109.47581 * 59.99765 * 18 17 15 20 20 C 1.52996 * 109.47304 * 300.00135 * 19 18 17 21 21 H 1.08998 * 109.47374 * 179.97438 * 20 19 18 22 22 C 1.53003 * 109.47021 * 299.99570 * 20 19 18 23 23 C 1.52995 * 109.47179 * 184.19211 * 15 13 3 24 24 H 1.09008 * 109.46912 * 185.21003 * 1 2 3 25 25 H 1.08994 * 109.47275 * 305.19865 * 1 2 3 26 26 H 1.08992 * 109.47445 * 65.20937 * 1 2 3 27 27 H 1.09000 * 109.47297 * 240.00304 * 2 1 3 28 28 H 1.09001 * 109.47276 * 119.99921 * 2 1 3 29 29 H 0.96996 * 120.00518 * 356.74430 * 8 7 5 30 30 H 1.08999 * 109.46563 * 299.99874 * 17 15 13 31 31 H 1.09000 * 109.47234 * 59.99485 * 17 15 13 32 32 H 1.08999 * 109.47349 * 299.99375 * 18 17 15 33 33 H 1.09006 * 109.47333 * 179.97438 * 18 17 15 34 34 H 1.09005 * 109.47783 * 179.97438 * 19 18 17 35 35 H 1.09004 * 109.47053 * 59.99940 * 19 18 17 36 36 H 1.08997 * 109.47125 * 179.97438 * 22 20 19 37 37 H 1.08990 * 109.47199 * 299.99985 * 22 20 19 38 38 H 1.09000 * 109.46662 * 60.00017 * 22 20 19 39 39 H 1.09002 * 109.47445 * 299.99756 * 23 15 13 40 40 H 1.09004 * 109.47376 * 60.00063 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5964 1.9847 0.8352 5 6 3.5405 1.4449 0.1396 6 1 4.1572 1.8129 -0.6671 7 6 4.1259 0.9775 1.2971 8 7 3.3761 0.6425 2.3243 9 14 5.9840 0.8198 1.4061 10 1 6.3587 0.2975 2.7448 11 1 6.6066 2.1524 1.2021 12 1 6.4637 -0.1165 0.3580 13 16 1.5763 2.2478 -1.5579 14 8 2.1452 1.5346 -2.6474 15 6 2.3628 3.8770 -1.4251 16 1 3.4458 3.7564 -1.3972 17 6 1.8933 4.5670 -0.1426 18 6 2.5562 5.9413 -0.0309 19 6 2.1685 6.7944 -1.2403 20 6 2.6379 6.1046 -2.5227 21 1 2.3613 6.7121 -3.3843 22 6 4.1581 5.9359 -2.4839 23 6 1.9756 4.7304 -2.6344 24 1 -0.3633 -1.0235 0.0933 25 1 -0.3633 0.5923 0.8397 26 1 -0.3634 0.4309 -0.9329 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.4152 0.7686 2.2850 30 1 0.8104 4.6875 -0.1706 31 1 2.1691 3.9589 0.7189 32 1 3.6392 5.8212 -0.0032 33 1 2.2214 6.4330 0.8825 34 1 2.6404 7.7738 -1.1606 35 1 1.0855 6.9146 -1.2680 36 1 4.4925 5.4440 -3.3973 37 1 4.6304 6.9150 -2.4043 38 1 4.4343 5.3281 -1.6223 39 1 2.3101 4.2390 -3.5481 40 1 0.8926 4.8510 -2.6623 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218013169.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:47 Heat of formation + Delta-G solvation = -102.502072 kcal Electronic energy + Delta-G solvation = -18731.913101 eV Core-core repulsion = 16056.713468 eV Total energy + Delta-G solvation = -2675.199632 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.77643 -37.02780 -36.47343 -33.52798 -32.85950 -31.68639 -29.14957 -27.62878 -25.21419 -23.67094 -23.08862 -22.16272 -19.54102 -19.29284 -18.18167 -17.26547 -16.57875 -15.81930 -15.63338 -15.38724 -15.16932 -14.79312 -14.60498 -14.28036 -14.14262 -13.83286 -13.68578 -13.41181 -12.98239 -12.76444 -12.63219 -12.48105 -12.45511 -12.16967 -12.07072 -11.95710 -11.89439 -11.77631 -11.53539 -11.04665 -10.86407 -10.82777 -10.55559 -10.22826 -9.03113 -8.54304 -6.39361 1.06006 1.38122 1.43285 1.63446 2.03121 2.43409 3.03296 3.18687 3.76606 3.84087 4.03271 4.26600 4.31746 4.36493 4.37968 4.47490 4.51520 4.52495 4.65933 4.75209 4.82163 4.88558 4.92920 4.96295 5.07591 5.11479 5.18903 5.20902 5.24819 5.30189 5.34686 5.42412 5.46703 5.49266 5.56492 5.66246 5.78930 6.14850 6.55888 7.35259 8.74492 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.017789 B = 0.008988 C = 0.007202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.586638 B = 3114.499571 C = 3886.717099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.257 4.257 4 H 0.082 0.918 5 C -0.604 4.604 6 H 0.016 0.984 7 C -0.007 4.007 8 N -0.917 5.917 9 Si 1.088 2.912 10 H -0.272 1.272 11 H -0.274 1.274 12 H -0.290 1.290 13 S 1.254 4.746 14 O -0.934 6.934 15 C -0.384 4.384 16 H 0.057 0.943 17 C -0.089 4.089 18 C -0.117 4.117 19 C -0.105 4.105 20 C -0.082 4.082 21 H 0.091 0.909 22 C -0.155 4.155 23 C -0.091 4.091 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.016 0.984 28 H 0.045 0.955 29 H 0.272 0.728 30 H 0.104 0.896 31 H 0.049 0.951 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.037 0.963 37 H 0.068 0.932 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.884 12.896 -4.446 16.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C -0.376 4.376 4 H 0.100 0.900 5 C -0.642 4.642 6 H 0.034 0.966 7 C -0.210 4.210 8 N -0.553 5.553 9 Si 0.912 3.088 10 H -0.197 1.197 11 H -0.200 1.200 12 H -0.216 1.216 13 S 1.459 4.541 14 O -0.929 6.929 15 C -0.504 4.504 16 H 0.075 0.925 17 C -0.127 4.127 18 C -0.156 4.156 19 C -0.142 4.142 20 C -0.102 4.102 21 H 0.110 0.890 22 C -0.212 4.212 23 C -0.130 4.130 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.035 0.965 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.212 11.991 -4.235 15.138 hybrid contribution 1.887 -0.442 -0.743 2.076 sum -6.325 11.549 -4.978 14.077 Atomic orbital electron populations 1.21931 0.93326 1.02788 1.02884 1.21290 0.96705 0.97026 0.99531 1.24983 1.00243 1.00798 1.11590 0.90016 1.21761 0.91463 1.47932 1.03025 0.96559 1.26621 1.09349 0.92811 0.92190 1.70852 1.08007 1.45051 1.31439 0.83299 0.71785 0.77306 0.76408 1.19652 1.19966 1.21631 1.68203 1.16420 0.86601 0.82833 1.92874 1.81847 1.70974 1.47246 1.27195 1.07441 1.13391 1.02336 0.92471 1.21229 1.02054 0.95996 0.93456 1.21542 0.99573 0.95228 0.99248 1.21540 1.02309 0.97802 0.92524 1.21074 0.94155 0.95336 0.99609 0.89038 1.21972 0.97296 1.01515 1.00465 1.21341 1.02598 0.95157 0.93869 0.91905 0.90403 0.91471 0.96526 0.93655 0.91709 0.87717 0.93240 0.94344 0.90526 0.91006 0.89415 0.94365 0.91307 0.94419 0.94282 0.87731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.00 9.66 71.98 0.70 -4.30 16 2 C -0.11 -4.91 5.08 30.59 0.16 -4.75 16 3 C -0.26 -12.03 1.19 29.85 0.04 -11.99 16 4 H 0.08 3.65 6.54 -2.39 -0.02 3.63 16 5 C -0.60 -34.23 7.92 25.60 0.20 -34.02 16 6 H 0.02 0.99 7.04 -2.91 -0.02 0.97 16 7 C -0.01 -0.39 5.21 84.66 0.44 0.05 16 8 N -0.92 -53.41 12.85 21.45 0.28 -53.13 16 9 Si 1.09 52.65 29.91 68.60 2.05 54.70 16 10 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 12 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 13 S 1.25 49.30 11.03 -56.49 -0.62 48.68 16 14 O -0.93 -49.28 18.09 -148.98 -2.70 -51.98 16 15 C -0.38 -13.37 1.98 30.59 0.06 -13.31 16 16 H 0.06 2.49 5.62 -2.39 -0.01 2.48 16 17 C -0.09 -2.58 4.98 30.59 0.15 -2.43 16 18 C -0.12 -2.97 5.65 30.59 0.17 -2.79 16 19 C -0.10 -2.04 5.45 30.59 0.17 -1.88 16 20 C -0.08 -1.90 3.19 -10.81 -0.03 -1.93 16 21 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 22 C -0.16 -4.27 8.50 71.98 0.61 -3.66 16 23 C -0.09 -2.50 4.73 30.58 0.14 -2.36 16 24 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 25 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.07 1.90 7.35 -2.39 -0.02 1.88 16 27 H 0.02 0.83 8.10 -2.39 -0.02 0.81 16 28 H 0.04 2.33 6.22 -2.39 -0.01 2.32 16 29 H 0.27 15.35 6.10 -92.71 -0.57 14.78 16 30 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.05 1.75 6.64 -2.39 -0.02 1.74 16 32 H 0.04 1.15 6.43 -2.39 -0.02 1.14 16 33 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.04 1.24 4.81 -2.39 -0.01 1.23 16 39 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -76.32 311.17 3.01 -73.31 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 1.20 Total: 11.80 kcal Atomic # 6 Polarization: -86.19 SS G_CDS: 2.80 Total: -83.38 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.28 Total: -53.13 kcal Atomic # 8 Polarization: -49.28 SS G_CDS: -2.70 Total: -51.98 kcal Atomic # 14 Polarization: 52.65 SS G_CDS: 2.05 Total: 54.70 kcal Atomic # 16 Polarization: 49.30 SS G_CDS: -0.62 Total: 48.68 kcal Total: -76.32 3.01 -73.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218013169.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.190 kcal (2) G-P(sol) polarization free energy of solvation -76.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds