Wall clock time and date at job start Mon Mar 30 2020 07:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.47165 * 2 1 4 4 C 1.52998 * 109.46855 * 240.00166 * 2 1 3 5 5 N 1.46495 * 109.46894 * 182.87755 * 4 2 1 6 6 C 1.46505 * 120.00265 * 84.12031 * 5 4 2 7 7 C 1.50703 * 109.47309 * 95.02501 * 6 5 4 8 8 H 1.08000 * 119.99377 * 3.04555 * 7 6 5 9 9 C 1.37873 * 120.00014 * 183.04693 * 7 6 5 10 10 N 1.31511 * 120.00316 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99854 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46904 * 60.00413 * 11 9 7 13 13 H 1.48503 * 109.47236 * 179.97438 * 11 9 7 14 14 H 1.48491 * 109.47415 * 300.00117 * 11 9 7 15 15 C 1.39703 * 120.00249 * 264.11793 * 5 4 2 16 16 C 1.39036 * 119.99804 * 359.72705 * 15 5 4 17 17 C 1.38204 * 120.23157 * 179.72027 * 16 15 5 18 18 C 1.38020 * 120.23216 * 0.55488 * 17 16 15 19 19 C 1.39637 * 119.99748 * 359.72039 * 18 17 16 20 20 C 1.43199 * 120.11578 * 179.97438 * 19 18 17 21 21 N 7.89499 * 160.18702 * 291.79035 * 2 1 3 22 22 C 1.38622 * 120.00627 * 180.02562 * 15 5 4 23 23 H 1.08999 * 109.47372 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46714 * 300.00069 * 1 2 3 25 25 H 1.08997 * 109.46977 * 59.99550 * 1 2 3 26 26 H 1.08997 * 109.46977 * 120.00450 * 2 1 3 27 27 H 1.08999 * 109.47052 * 60.15580 * 3 2 1 28 28 H 1.09001 * 109.46852 * 180.15341 * 3 2 1 29 29 H 1.08998 * 109.46913 * 300.15309 * 3 2 1 30 30 H 1.09002 * 109.47308 * 302.87428 * 4 2 1 31 31 H 1.08995 * 109.47174 * 62.87512 * 4 2 1 32 32 H 1.08993 * 109.47173 * 215.02719 * 6 5 4 33 33 H 1.09004 * 109.46941 * 335.02671 * 6 5 4 34 34 H 0.96996 * 120.00745 * 180.02562 * 10 9 7 35 35 H 1.07998 * 119.88260 * 359.97438 * 16 15 5 36 36 H 1.08002 * 119.88940 * 180.28108 * 17 16 15 37 37 H 1.08001 * 119.99671 * 179.74876 * 18 17 16 38 38 H 1.08001 * 120.11261 * 359.97438 * 22 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5033 -0.7816 -1.2151 6 6 4.1753 -1.8508 -0.4725 7 6 4.5100 -2.9810 -1.4115 8 1 4.2929 -2.8895 -2.4655 9 6 5.0933 -4.1317 -0.9251 10 7 5.3572 -4.2432 0.3584 11 14 5.5075 -5.5328 -2.0890 12 1 6.4635 -5.0540 -3.1195 13 1 6.1226 -6.6468 -1.3235 14 1 4.2665 -6.0112 -2.7492 15 6 4.2581 0.1805 -1.8907 16 6 3.6204 1.1919 -2.6003 17 6 4.3624 2.1495 -3.2656 18 6 5.7415 2.1018 -3.2398 19 6 6.3919 1.0869 -2.5350 20 6 7.8227 1.0347 -2.5070 21 7 8.9577 0.9934 -2.4848 22 6 5.6428 0.1231 -1.8589 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8934 -0.5139 0.8899 27 1 1.6791 1.9555 0.8914 28 1 3.1301 1.4425 -0.0028 29 1 1.6745 1.9571 -0.8886 30 1 1.6352 -1.7329 -1.2754 31 1 1.7194 -0.1785 -2.1384 32 1 5.0923 -1.4638 -0.0283 33 1 3.5160 -2.2160 0.3151 34 1 5.7680 -5.0525 0.7007 35 1 2.5416 1.2318 -2.6282 36 1 3.8613 2.9354 -3.8113 37 1 6.3175 2.8497 -3.7645 38 1 6.1401 -0.6643 -1.3120 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221537565.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:33 Heat of formation + Delta-G solvation = 46.449414 kcal Electronic energy + Delta-G solvation = -18972.373045 eV Core-core repulsion = 16200.481234 eV Total energy + Delta-G solvation = -2771.891811 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.43757 -37.12631 -35.79619 -34.21953 -32.56689 -30.88047 -29.41775 -27.61484 -26.91322 -25.01846 -23.28241 -22.83567 -20.63624 -19.73759 -18.05646 -16.49288 -16.11078 -15.45853 -15.18323 -14.55673 -14.29230 -14.09888 -13.68278 -13.53329 -13.49942 -12.79404 -12.59142 -12.46482 -12.23332 -12.06198 -11.91766 -11.53442 -11.41076 -11.18882 -11.13525 -10.92537 -10.78546 -10.68578 -10.46857 -10.32908 -9.95002 -9.82942 -9.05970 -8.55616 -8.49251 -6.64226 -6.09892 -4.22812 1.28958 2.02701 3.03522 3.25818 3.30995 3.33616 3.42769 3.91253 4.33110 4.38318 4.43848 5.08557 5.17044 5.18957 5.25514 5.37087 5.48567 5.61302 5.72973 5.79009 5.89643 5.95956 6.00340 6.02996 6.11241 6.23739 6.30368 6.34910 6.54112 6.57424 6.71144 6.82923 6.84142 6.97064 7.23419 7.26511 7.74902 7.85247 8.06645 8.14729 8.31730 8.85729 9.44730 10.90634 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.011440 B = 0.009143 C = 0.005636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.054077 B = 3061.638369 C = 4967.283822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C -0.142 4.142 4 C 0.129 3.871 5 N -0.604 5.604 6 C 0.250 3.750 7 C -0.535 4.535 8 H 0.060 0.940 9 C 0.064 3.936 10 N -0.893 5.893 11 Si 0.894 3.106 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.240 3.760 16 C -0.191 4.191 17 C -0.078 4.078 18 C -0.155 4.155 19 C 0.007 3.993 20 C 0.269 3.731 21 N -0.440 5.440 22 C -0.138 4.138 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.030 0.970 33 H 0.036 0.964 34 H 0.265 0.735 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.671 10.942 -3.064 14.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.137 4.137 3 C -0.199 4.199 4 C 0.004 3.996 5 N -0.307 5.307 6 C 0.130 3.870 7 C -0.574 4.574 8 H 0.079 0.921 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.722 3.278 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.133 3.867 16 C -0.215 4.215 17 C -0.097 4.097 18 C -0.179 4.179 19 C 0.003 3.997 20 C -0.046 4.046 21 N -0.116 5.116 22 C -0.163 4.163 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.092 0.908 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.952 10.544 -2.749 12.926 hybrid contribution -0.171 -0.999 -0.539 1.148 sum -7.122 9.545 -3.289 12.355 Atomic orbital electron populations 1.21764 0.95367 1.01615 1.01309 1.21610 0.95086 0.96948 1.00089 1.21868 1.01911 0.95498 1.00659 1.21413 0.80994 1.00624 0.96539 1.47199 1.03773 1.27260 1.52495 1.19283 0.92867 0.83549 0.91266 1.21524 1.40832 1.00113 0.94933 0.92131 1.24944 0.95405 0.98425 0.95125 1.69904 1.42568 1.28271 1.12411 0.86609 0.78792 0.81527 0.80884 1.20081 1.21198 1.20171 1.17666 0.90333 0.88410 0.90322 1.20891 0.99798 0.97319 1.03458 1.20599 0.93015 0.97901 0.98164 1.20625 0.94529 0.99261 1.03457 1.15743 0.83595 0.98218 1.02124 1.25905 0.92903 0.92818 0.92985 1.81159 1.12399 1.08802 1.09195 1.20897 0.92467 0.99940 1.02975 0.92674 0.92947 0.92944 0.90848 0.93653 0.92018 0.92997 0.90766 0.91497 0.95167 0.94591 0.92525 0.85923 0.86195 0.86513 0.84035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.19 37.16 0.34 -1.20 16 2 C -0.12 -1.57 3.14 -90.61 -0.28 -1.85 16 3 C -0.14 -1.77 7.81 37.16 0.29 -1.48 16 4 C 0.13 1.97 4.88 -4.05 -0.02 1.95 16 5 N -0.60 -11.19 2.31 -173.16 -0.40 -11.59 16 6 C 0.25 5.75 4.84 -5.19 -0.03 5.73 16 7 C -0.54 -13.80 9.23 -34.44 -0.32 -14.12 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -24.95 13.29 55.43 0.74 -24.21 16 11 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 C 0.24 4.16 5.34 -83.83 -0.45 3.71 16 16 C -0.19 -2.69 7.71 -39.30 -0.30 -2.99 16 17 C -0.08 -0.98 10.02 -39.67 -0.40 -1.37 16 18 C -0.16 -2.12 9.75 -39.14 -0.38 -2.50 16 19 C 0.01 0.12 5.73 -106.96 -0.61 -0.49 16 20 C 0.27 4.73 15.33 -22.47 -0.34 4.38 16 21 N -0.44 -8.41 18.54 41.84 0.78 -7.63 16 22 C -0.14 -2.53 8.86 -38.95 -0.35 -2.87 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.89 6.40 -51.93 -0.33 0.56 16 29 H 0.05 0.58 7.05 -51.93 -0.37 0.21 16 30 H 0.07 1.22 8.12 -51.93 -0.42 0.80 16 31 H 0.07 0.90 5.87 -51.93 -0.30 0.59 16 32 H 0.03 0.75 6.48 -51.93 -0.34 0.41 16 33 H 0.04 0.88 8.03 -51.93 -0.42 0.46 16 34 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.12 1.52 4.90 -52.49 -0.26 1.27 16 36 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.14 2.97 6.18 -52.49 -0.32 2.65 16 LS Contribution 318.26 15.07 4.80 4.80 Total: -1.00 -27.55 318.26 -7.32 -34.87 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.26 Total: -0.67 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -2.94 Total: -11.51 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 1.11 Total: -43.43 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.55 -7.32 -34.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221537565.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.319 kcal (2) G-P(sol) polarization free energy of solvation -27.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds