Wall clock time and date at job start Mon Mar 30 2020 07:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.47165 * 2 1 4 4 C 1.52998 * 109.46855 * 240.00166 * 2 1 3 5 5 N 1.46495 * 109.46894 * 182.87755 * 4 2 1 6 6 C 1.46505 * 120.00265 * 84.12031 * 5 4 2 7 7 C 1.50703 * 109.47309 * 95.02501 * 6 5 4 8 8 H 1.08000 * 119.99377 * 3.04555 * 7 6 5 9 9 C 1.37873 * 120.00014 * 183.04693 * 7 6 5 10 10 N 1.31511 * 120.00316 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99854 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46904 * 60.00413 * 11 9 7 13 13 H 1.48503 * 109.47236 * 179.97438 * 11 9 7 14 14 H 1.48491 * 109.47415 * 300.00117 * 11 9 7 15 15 C 1.39703 * 120.00249 * 264.11793 * 5 4 2 16 16 C 1.39036 * 119.99804 * 359.72705 * 15 5 4 17 17 C 1.38204 * 120.23157 * 179.72027 * 16 15 5 18 18 C 1.38020 * 120.23216 * 0.55488 * 17 16 15 19 19 C 1.39637 * 119.99748 * 359.72039 * 18 17 16 20 20 C 1.43199 * 120.11578 * 179.97438 * 19 18 17 21 21 N 7.89499 * 160.18702 * 291.79035 * 2 1 3 22 22 C 1.38622 * 120.00627 * 180.02562 * 15 5 4 23 23 H 1.08999 * 109.47372 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46714 * 300.00069 * 1 2 3 25 25 H 1.08997 * 109.46977 * 59.99550 * 1 2 3 26 26 H 1.08997 * 109.46977 * 120.00450 * 2 1 3 27 27 H 1.08999 * 109.47052 * 60.15580 * 3 2 1 28 28 H 1.09001 * 109.46852 * 180.15341 * 3 2 1 29 29 H 1.08998 * 109.46913 * 300.15309 * 3 2 1 30 30 H 1.09002 * 109.47308 * 302.87428 * 4 2 1 31 31 H 1.08995 * 109.47174 * 62.87512 * 4 2 1 32 32 H 1.08993 * 109.47173 * 215.02719 * 6 5 4 33 33 H 1.09004 * 109.46941 * 335.02671 * 6 5 4 34 34 H 0.96996 * 120.00745 * 180.02562 * 10 9 7 35 35 H 1.07998 * 119.88260 * 359.97438 * 16 15 5 36 36 H 1.08002 * 119.88940 * 180.28108 * 17 16 15 37 37 H 1.08001 * 119.99671 * 179.74876 * 18 17 16 38 38 H 1.08001 * 120.11261 * 359.97438 * 22 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5033 -0.7816 -1.2151 6 6 4.1753 -1.8508 -0.4725 7 6 4.5100 -2.9810 -1.4115 8 1 4.2929 -2.8895 -2.4655 9 6 5.0933 -4.1317 -0.9251 10 7 5.3572 -4.2432 0.3584 11 14 5.5075 -5.5328 -2.0890 12 1 6.4635 -5.0540 -3.1195 13 1 6.1226 -6.6468 -1.3235 14 1 4.2665 -6.0112 -2.7492 15 6 4.2581 0.1805 -1.8907 16 6 3.6204 1.1919 -2.6003 17 6 4.3624 2.1495 -3.2656 18 6 5.7415 2.1018 -3.2398 19 6 6.3919 1.0869 -2.5350 20 6 7.8227 1.0347 -2.5070 21 7 8.9577 0.9934 -2.4848 22 6 5.6428 0.1231 -1.8589 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8934 -0.5139 0.8899 27 1 1.6791 1.9555 0.8914 28 1 3.1301 1.4425 -0.0028 29 1 1.6745 1.9571 -0.8886 30 1 1.6352 -1.7329 -1.2754 31 1 1.7194 -0.1785 -2.1384 32 1 5.0923 -1.4638 -0.0283 33 1 3.5160 -2.2160 0.3151 34 1 5.7680 -5.0525 0.7007 35 1 2.5416 1.2318 -2.6282 36 1 3.8613 2.9354 -3.8113 37 1 6.3175 2.8497 -3.7645 38 1 6.1401 -0.6643 -1.3120 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221537565.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:33 Heat of formation + Delta-G solvation = 33.365554 kcal Electronic energy + Delta-G solvation = -18972.940404 eV Core-core repulsion = 16200.481234 eV Total energy + Delta-G solvation = -2772.459170 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.71644 -38.42983 -37.14991 -35.68733 -34.34020 -32.15383 -30.79167 -29.23091 -27.85602 -26.48783 -24.75824 -24.27580 -21.94926 -20.88408 -19.40422 -18.50618 -17.38593 -16.98170 -16.47467 -16.15422 -15.56725 -15.32070 -14.99840 -14.88954 -14.75354 -14.36007 -14.12037 -13.72667 -13.62192 -13.33063 -13.14590 -12.95244 -12.84751 -12.59157 -12.58375 -12.31284 -12.23843 -12.12427 -11.81354 -11.67670 -11.56737 -11.23095 -10.63441 -10.48652 -9.72199 -8.36653 -7.82881 -6.35144 0.01260 0.83904 1.36192 1.38292 1.45276 1.62005 2.07606 2.33537 2.58636 3.02504 3.08347 3.16881 3.98794 4.15049 4.16476 4.30921 4.37427 4.47594 4.63994 4.68431 4.79759 4.84561 4.92632 5.01081 5.08570 5.12867 5.14702 5.19960 5.25302 5.35625 5.46459 5.55686 5.59901 5.60447 5.68609 5.70483 6.04380 6.09482 6.44379 6.51766 6.85769 6.95556 7.36728 8.83697 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.011440 B = 0.009143 C = 0.005636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.054077 B = 3061.638369 C = 4967.283822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.114 4.114 3 C -0.135 4.135 4 C 0.128 3.872 5 N -0.615 5.615 6 C 0.272 3.728 7 C -0.537 4.537 8 H 0.055 0.945 9 C 0.013 3.987 10 N -0.927 5.927 11 Si 0.953 3.047 12 H -0.277 1.277 13 H -0.284 1.284 14 H -0.265 1.265 15 C 0.219 3.781 16 C -0.172 4.172 17 C -0.063 4.063 18 C -0.135 4.135 19 C -0.004 4.004 20 C 0.281 3.719 21 N -0.474 5.474 22 C -0.168 4.168 23 H 0.049 0.951 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.040 0.960 27 H 0.055 0.945 28 H 0.036 0.964 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.002 0.998 33 H 0.012 0.988 34 H 0.265 0.735 35 H 0.149 0.851 36 H 0.170 0.830 37 H 0.148 0.852 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.751 13.363 -5.457 17.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.134 4.134 3 C -0.193 4.193 4 C 0.005 3.995 5 N -0.320 5.320 6 C 0.150 3.850 7 C -0.576 4.576 8 H 0.073 0.927 9 C -0.187 4.187 10 N -0.567 5.567 11 Si 0.778 3.222 12 H -0.203 1.203 13 H -0.209 1.209 14 H -0.190 1.190 15 C 0.114 3.886 16 C -0.195 4.195 17 C -0.081 4.081 18 C -0.158 4.158 19 C -0.008 4.008 20 C -0.032 4.032 21 N -0.150 5.150 22 C -0.194 4.194 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.020 0.980 33 H 0.030 0.970 34 H 0.074 0.926 35 H 0.167 0.833 36 H 0.188 0.812 37 H 0.166 0.834 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.044 12.998 -5.166 16.656 hybrid contribution 0.461 -1.628 0.168 1.700 sum -8.583 11.370 -4.998 15.097 Atomic orbital electron populations 1.21714 0.92919 1.01867 1.02884 1.21544 0.97000 0.97130 0.97700 1.21805 1.00270 0.94827 1.02357 1.21577 0.78949 1.00335 0.98658 1.46946 1.04968 1.26951 1.53178 1.18658 0.91486 0.84280 0.90613 1.21804 1.39952 1.00877 0.94922 0.92724 1.25721 0.95571 1.00910 0.96449 1.70019 1.43776 1.28883 1.14003 0.85683 0.78768 0.78791 0.78932 1.20261 1.20893 1.18954 1.17877 0.89834 0.89404 0.91470 1.21222 1.01210 0.95735 1.01378 1.21135 0.92344 0.97895 0.96721 1.21065 0.95506 0.97962 1.01249 1.15835 0.82680 0.99102 1.03194 1.26199 0.93194 0.91849 0.92007 1.81154 1.13379 1.09979 1.10511 1.20635 0.93480 1.00420 1.04865 0.93176 0.91904 0.90765 0.94127 0.92624 0.94477 0.90567 0.92735 0.88607 0.98010 0.97008 0.92617 0.83333 0.81227 0.83422 0.88399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.19 71.98 0.66 -1.97 16 2 C -0.11 -2.95 3.14 -10.79 -0.03 -2.98 16 3 C -0.14 -3.08 7.81 71.98 0.56 -2.51 16 4 C 0.13 3.83 4.88 86.38 0.42 4.25 16 5 N -0.61 -23.41 2.31 -701.77 -1.62 -25.03 16 6 C 0.27 13.39 4.84 85.63 0.41 13.81 16 7 C -0.54 -28.96 9.23 25.60 0.24 -28.72 16 8 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 9 C 0.01 0.70 5.46 84.65 0.46 1.17 16 10 N -0.93 -54.25 13.29 21.45 0.28 -53.96 16 11 Si 0.95 44.04 29.54 68.60 2.03 46.07 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 14 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 15 C 0.22 7.52 5.34 38.17 0.20 7.73 16 16 C -0.17 -4.20 7.71 22.45 0.17 -4.02 16 17 C -0.06 -1.22 10.02 22.21 0.22 -1.00 16 18 C -0.14 -3.14 9.75 22.56 0.22 -2.92 16 19 C 0.00 -0.13 5.73 -21.38 -0.12 -0.25 16 20 C 0.28 9.98 15.33 88.33 1.35 11.34 16 21 N -0.47 -18.41 18.54 19.00 0.35 -18.06 16 22 C -0.17 -6.42 8.86 22.68 0.20 -6.21 16 23 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.04 1.03 6.40 -2.39 -0.02 1.01 16 29 H 0.08 1.34 7.05 -2.39 -0.02 1.33 16 30 H 0.05 1.82 8.12 -2.39 -0.02 1.80 16 31 H 0.10 2.27 5.87 -2.39 -0.01 2.25 16 32 H 0.00 0.11 6.48 -2.39 -0.02 0.09 16 33 H 0.01 0.63 8.03 -2.39 -0.02 0.61 16 34 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 35 H 0.15 2.86 4.90 -2.91 -0.01 2.85 16 36 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 37 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 38 H 0.10 4.54 6.18 -2.91 -0.02 4.52 16 Total: -1.00 -64.21 318.26 7.07 -57.14 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 1.05 Total: 6.16 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: 4.98 Total: -12.31 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -0.98 Total: -97.05 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -64.21 7.07 -57.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221537565.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.504 kcal (2) G-P(sol) polarization free energy of solvation -64.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds