Wall clock time and date at job start Mon Mar 30 2020 07:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99454 * 2 1 4 4 C 1.50705 * 109.46784 * 179.97438 * 3 2 1 5 5 C 1.38831 * 119.73699 * 270.02264 * 4 3 2 6 6 C 1.37754 * 120.66342 * 179.97438 * 5 4 3 7 7 C 1.39121 * 119.77976 * 359.96402 * 6 5 4 8 8 C 1.40665 * 119.33633 * 0.03516 * 7 6 5 9 9 C 1.46480 * 106.04169 * 179.97438 * 8 7 6 10 10 C 1.34241 * 106.99909 * 0.02562 * 9 8 7 11 11 N 1.36827 * 109.92922 * 359.97438 * 10 9 8 12 12 C 1.46497 * 125.06338 * 180.27053 * 11 10 9 13 13 C 1.53004 * 109.47178 * 264.69464 * 12 11 10 14 14 C 1.50693 * 109.47202 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99865 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00057 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99950 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99853 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47323 * 90.00033 * 18 16 14 20 20 H 1.48499 * 109.46992 * 209.99734 * 18 16 14 21 21 H 1.48499 * 109.47579 * 329.99783 * 18 16 14 22 22 C 1.36631 * 119.73499 * 89.99839 * 4 3 2 23 23 H 1.08997 * 109.47271 * 59.99994 * 1 2 3 24 24 H 1.09007 * 109.47054 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47513 * 299.99921 * 1 2 3 26 26 H 1.00902 * 111.00011 * 236.04700 * 2 1 3 27 27 H 1.08992 * 109.47176 * 60.00640 * 3 2 1 28 28 H 1.08995 * 109.47553 * 299.99761 * 3 2 1 29 29 H 1.07994 * 119.66512 * 359.97438 * 5 4 3 30 30 H 1.08003 * 120.10507 * 179.97438 * 6 5 4 31 31 H 1.08009 * 126.50121 * 179.97438 * 9 8 7 32 32 H 1.07996 * 125.03447 * 180.02562 * 10 9 8 33 33 H 1.08993 * 109.47211 * 24.69659 * 12 11 10 34 34 H 1.09002 * 109.47100 * 144.69628 * 12 11 10 35 35 H 1.09002 * 109.46978 * 300.00236 * 13 12 11 36 36 H 1.08997 * 109.46991 * 59.99587 * 13 12 11 37 37 H 0.96998 * 119.99616 * 179.97438 * 17 16 14 38 38 H 1.08001 * 120.11425 * 0.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 3.5018 1.3313 0.0006 5 6 4.1897 1.3127 1.2064 6 6 5.5666 1.2755 1.2293 7 6 6.2772 1.2555 0.0334 8 6 5.5755 1.2745 -1.1856 9 6 6.5931 1.2468 -2.2388 10 6 7.7885 1.2137 -1.6289 11 7 7.6195 1.2186 -0.2711 12 6 8.7052 1.1944 0.7122 13 6 8.9606 -0.2479 1.1545 14 6 10.0770 -0.2728 2.1664 15 1 10.5567 0.6479 2.4640 16 6 10.4867 -1.4712 2.7115 17 7 9.9029 -2.5924 2.3488 18 14 11.8710 -1.5020 3.9654 19 1 11.3053 -1.3590 5.3310 20 1 12.6013 -2.7911 3.8647 21 1 12.8069 -0.3807 3.6974 22 6 4.1798 1.3131 -1.1855 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8306 -0.5261 -0.7814 27 1 1.6459 1.8947 0.8900 28 1 1.6459 1.8948 -0.8899 29 1 3.6398 1.3276 2.1357 30 1 6.0925 1.2616 2.1725 31 1 6.4154 1.2512 -3.3042 32 1 8.7422 1.1880 -2.1349 33 1 9.6108 1.6026 0.2637 34 1 8.4254 1.7955 1.5773 35 1 8.0549 -0.6562 1.6030 36 1 9.2403 -0.8491 0.2894 37 1 10.1914 -3.4354 2.7320 38 1 3.6379 1.3278 -2.1196 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229719694.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:53 Heat of formation + Delta-G solvation = 48.914037 kcal Electronic energy + Delta-G solvation = -18238.606531 eV Core-core repulsion = 15466.821594 eV Total energy + Delta-G solvation = -2771.784937 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.84578 -37.68178 -35.33190 -33.93208 -32.21430 -30.78386 -29.34440 -28.13951 -26.32651 -24.67295 -23.42079 -22.13562 -21.48133 -20.29193 -19.57296 -16.93715 -16.37135 -15.89739 -15.48618 -15.04337 -14.74271 -14.59944 -14.00341 -13.82142 -13.51007 -13.22831 -12.90015 -12.56496 -12.30234 -12.17120 -12.07718 -11.88096 -11.57949 -11.09323 -11.01399 -10.97981 -10.60471 -10.44732 -10.15824 -9.83008 -9.36042 -9.13484 -8.52357 -8.48828 -7.67728 -7.13843 -6.12476 -4.18496 1.53882 1.98626 3.18607 3.25074 3.31398 3.33694 3.47981 4.09949 4.36205 4.52903 4.95424 5.00845 5.22148 5.23272 5.25955 5.29811 5.39211 5.43205 5.62100 5.64521 5.72503 5.79370 5.99105 6.11087 6.14967 6.18745 6.32131 6.46576 6.51919 6.77063 6.89662 7.00710 7.18664 7.24864 7.29871 7.46477 7.50056 7.75070 7.78163 7.92680 8.20399 8.87596 9.46880 10.98395 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.024351 B = 0.004317 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.585918 B = 6484.084918 C = 7181.454597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.691 5.691 3 C 0.108 3.892 4 C -0.122 4.122 5 C -0.088 4.088 6 C -0.117 4.117 7 C 0.106 3.894 8 C -0.114 4.114 9 C -0.227 4.227 10 C 0.063 3.937 11 N -0.469 5.469 12 C 0.107 3.893 13 C 0.012 3.988 14 C -0.530 4.530 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.888 5.888 18 Si 0.897 3.103 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.070 4.070 23 H 0.018 0.982 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.344 0.656 27 H 0.076 0.924 28 H 0.032 0.968 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.139 0.861 32 H 0.163 0.837 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.024 0.976 36 H 0.022 0.978 37 H 0.263 0.737 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.090 8.231 -6.885 16.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.322 5.322 3 C -0.020 4.020 4 C -0.123 4.123 5 C -0.108 4.108 6 C -0.138 4.138 7 C -0.002 4.002 8 C -0.118 4.118 9 C -0.252 4.252 10 C -0.065 4.065 11 N -0.149 5.149 12 C -0.013 4.013 13 C -0.025 4.025 14 C -0.569 4.569 15 H 0.076 0.924 16 C -0.141 4.141 17 N -0.526 5.526 18 Si 0.724 3.276 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.089 4.089 23 H 0.037 0.963 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.162 0.838 27 H 0.094 0.906 28 H 0.051 0.949 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.157 0.843 32 H 0.180 0.820 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.042 0.958 36 H 0.040 0.960 37 H 0.073 0.927 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.750 7.965 -5.939 16.163 hybrid contribution 0.718 -0.016 -0.218 0.750 sum -12.032 7.949 -6.157 15.680 Atomic orbital electron populations 1.22199 0.88151 1.01758 1.00129 1.60435 1.07089 1.14179 1.50495 1.20784 0.91243 0.89439 1.00555 1.19034 0.94114 1.06034 0.93132 1.20520 0.92618 1.00414 0.97205 1.20130 0.93644 1.04418 0.95564 1.18295 0.83582 1.03233 0.95124 1.19126 0.92927 1.07121 0.92671 1.21483 0.90734 1.15365 0.97624 1.21826 0.99432 1.02598 0.82657 1.44558 1.04949 1.59321 1.06037 1.22275 0.86584 1.02639 0.89765 1.19440 0.97641 0.88562 0.96907 1.21018 1.18242 0.93340 1.24269 0.92354 1.25006 0.96804 0.95542 0.96751 1.69974 1.41492 0.98061 1.43091 0.86524 0.81963 0.77537 0.81586 1.20478 1.21077 1.19773 1.19954 0.91813 1.00298 0.96884 0.96319 0.91517 0.91818 0.83824 0.90603 0.94939 0.86218 0.86094 0.84325 0.81984 0.90374 0.90787 0.95806 0.95975 0.92705 0.87122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.70 60.07 0.64 0.89 16 2 N -0.69 -7.95 6.84 -122.42 -0.84 -8.79 16 3 C 0.11 1.25 5.79 -4.97 -0.03 1.22 16 4 C -0.12 -1.75 5.36 -104.98 -0.56 -2.31 16 5 C -0.09 -1.37 9.66 -39.54 -0.38 -1.75 16 6 C -0.12 -2.09 10.00 -39.43 -0.39 -2.49 16 7 C 0.11 2.01 6.81 -83.99 -0.57 1.44 16 8 C -0.11 -1.98 6.37 -105.14 -0.67 -2.65 16 9 C -0.23 -3.63 11.08 -37.67 -0.42 -4.05 16 10 C 0.06 1.05 11.27 -16.73 -0.19 0.86 16 11 N -0.47 -8.97 2.78 -114.43 -0.32 -9.28 16 12 C 0.11 2.17 5.94 -4.04 -0.02 2.14 16 13 C 0.01 0.31 5.30 -27.88 -0.15 0.16 16 14 C -0.53 -14.46 9.11 -34.44 -0.31 -14.77 16 15 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 18 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 C -0.07 -1.05 9.67 -39.64 -0.38 -1.44 16 23 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16 24 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.34 3.85 8.81 -39.29 -0.35 3.50 16 27 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 28 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 29 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 30 H 0.12 2.14 8.06 -52.48 -0.42 1.72 16 31 H 0.14 1.81 8.06 -52.48 -0.42 1.39 16 32 H 0.16 2.23 8.06 -52.49 -0.42 1.81 16 33 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 34 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 324.56 15.07 4.89 4.89 Total: -1.00 -30.69 324.56 -9.89 -40.58 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.80 Total: 3.29 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -3.54 Total: -21.11 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: -0.42 Total: -43.74 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.69 -9.89 -40.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229719694.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.493 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds