Wall clock time and date at job start Mon Mar 30 2020 07:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99454 * 2 1 4 4 C 1.50705 * 109.46784 * 179.97438 * 3 2 1 5 5 C 1.38831 * 119.73699 * 270.02264 * 4 3 2 6 6 C 1.37754 * 120.66342 * 179.97438 * 5 4 3 7 7 C 1.39121 * 119.77976 * 359.96402 * 6 5 4 8 8 C 1.40665 * 119.33633 * 0.03516 * 7 6 5 9 9 C 1.46480 * 106.04169 * 179.97438 * 8 7 6 10 10 C 1.34241 * 106.99909 * 0.02562 * 9 8 7 11 11 N 1.36827 * 109.92922 * 359.97438 * 10 9 8 12 12 C 1.46497 * 125.06338 * 180.27053 * 11 10 9 13 13 C 1.53004 * 109.47178 * 264.69464 * 12 11 10 14 14 C 1.50693 * 109.47202 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99865 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00057 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99950 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99853 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47323 * 90.00033 * 18 16 14 20 20 H 1.48499 * 109.46992 * 209.99734 * 18 16 14 21 21 H 1.48499 * 109.47579 * 329.99783 * 18 16 14 22 22 C 1.36631 * 119.73499 * 89.99839 * 4 3 2 23 23 H 1.08997 * 109.47271 * 59.99994 * 1 2 3 24 24 H 1.09007 * 109.47054 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47513 * 299.99921 * 1 2 3 26 26 H 1.00902 * 111.00011 * 236.04700 * 2 1 3 27 27 H 1.08992 * 109.47176 * 60.00640 * 3 2 1 28 28 H 1.08995 * 109.47553 * 299.99761 * 3 2 1 29 29 H 1.07994 * 119.66512 * 359.97438 * 5 4 3 30 30 H 1.08003 * 120.10507 * 179.97438 * 6 5 4 31 31 H 1.08009 * 126.50121 * 179.97438 * 9 8 7 32 32 H 1.07996 * 125.03447 * 180.02562 * 10 9 8 33 33 H 1.08993 * 109.47211 * 24.69659 * 12 11 10 34 34 H 1.09002 * 109.47100 * 144.69628 * 12 11 10 35 35 H 1.09002 * 109.46978 * 300.00236 * 13 12 11 36 36 H 1.08997 * 109.46991 * 59.99587 * 13 12 11 37 37 H 0.96998 * 119.99616 * 179.97438 * 17 16 14 38 38 H 1.08001 * 120.11425 * 0.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 3.5018 1.3313 0.0006 5 6 4.1897 1.3127 1.2064 6 6 5.5666 1.2755 1.2293 7 6 6.2772 1.2555 0.0334 8 6 5.5755 1.2745 -1.1856 9 6 6.5931 1.2468 -2.2388 10 6 7.7885 1.2137 -1.6289 11 7 7.6195 1.2186 -0.2711 12 6 8.7052 1.1944 0.7122 13 6 8.9606 -0.2479 1.1545 14 6 10.0770 -0.2728 2.1664 15 1 10.5567 0.6479 2.4640 16 6 10.4867 -1.4712 2.7115 17 7 9.9029 -2.5924 2.3488 18 14 11.8710 -1.5020 3.9654 19 1 11.3053 -1.3590 5.3310 20 1 12.6013 -2.7911 3.8647 21 1 12.8069 -0.3807 3.6974 22 6 4.1798 1.3131 -1.1855 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8306 -0.5261 -0.7814 27 1 1.6459 1.8947 0.8900 28 1 1.6459 1.8948 -0.8899 29 1 3.6398 1.3276 2.1357 30 1 6.0925 1.2616 2.1725 31 1 6.4154 1.2512 -3.3042 32 1 8.7422 1.1880 -2.1349 33 1 9.6108 1.6026 0.2637 34 1 8.4254 1.7955 1.5773 35 1 8.0549 -0.6562 1.6030 36 1 9.2403 -0.8491 0.2894 37 1 10.1914 -3.4354 2.7320 38 1 3.6379 1.3278 -2.1196 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229719694.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:51 Heat of formation + Delta-G solvation = 31.286956 kcal Electronic energy + Delta-G solvation = -18239.370899 eV Core-core repulsion = 15466.821594 eV Total energy + Delta-G solvation = -2772.549305 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.15709 -38.83511 -36.41489 -35.72733 -33.95251 -32.09866 -30.77581 -29.57390 -27.49654 -26.32559 -24.43963 -23.39909 -23.22174 -21.51266 -20.94825 -18.79021 -17.73091 -17.33058 -16.65538 -16.55187 -16.08558 -15.67707 -15.36163 -15.27683 -14.74704 -14.43898 -14.32831 -14.09930 -13.83006 -13.47660 -13.37014 -12.90510 -12.88748 -12.78114 -12.56320 -12.20927 -12.16161 -12.02818 -11.69121 -11.60232 -11.41243 -10.65369 -10.48888 -9.35680 -8.96739 -8.47105 -8.25982 -6.41631 0.27563 0.71602 1.39171 1.40640 1.51791 1.88791 2.08660 2.38909 2.93139 3.06857 3.58158 3.79307 3.93865 3.96392 4.07701 4.19812 4.39613 4.44511 4.56729 4.57608 4.66629 4.68955 4.69698 4.76709 4.90840 4.94364 5.08110 5.10110 5.23017 5.33869 5.39423 5.52597 5.68504 5.78046 5.94285 6.01010 6.04143 6.11414 6.42508 6.46307 6.51163 6.75243 7.29407 8.84866 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.024351 B = 0.004317 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.585918 B = 6484.084918 C = 7181.454597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.709 5.709 3 C 0.114 3.886 4 C -0.118 4.118 5 C -0.086 4.086 6 C -0.146 4.146 7 C 0.072 3.928 8 C -0.132 4.132 9 C -0.219 4.219 10 C 0.043 3.957 11 N -0.485 5.485 12 C 0.125 3.875 13 C 0.024 3.976 14 C -0.546 4.546 15 H 0.072 0.928 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.971 3.029 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.257 1.257 22 C -0.068 4.068 23 H 0.031 0.969 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.344 0.656 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.136 0.864 30 H 0.107 0.893 31 H 0.171 0.829 32 H 0.187 0.813 33 H 0.097 0.903 34 H 0.076 0.924 35 H -0.016 1.016 36 H -0.008 1.008 37 H 0.265 0.735 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.808 9.301 -7.520 18.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.341 5.341 3 C -0.015 4.015 4 C -0.119 4.119 5 C -0.105 4.105 6 C -0.167 4.167 7 C -0.035 4.035 8 C -0.137 4.137 9 C -0.244 4.244 10 C -0.083 4.083 11 N -0.167 5.167 12 C 0.004 3.996 13 C -0.014 4.014 14 C -0.584 4.584 15 H 0.090 0.910 16 C -0.196 4.196 17 N -0.572 5.572 18 Si 0.795 3.205 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.181 1.181 22 C -0.087 4.087 23 H 0.049 0.951 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.162 0.838 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.154 0.846 30 H 0.125 0.875 31 H 0.189 0.811 32 H 0.204 0.796 33 H 0.116 0.884 34 H 0.095 0.905 35 H 0.003 0.997 36 H 0.011 0.989 37 H 0.074 0.926 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.488 9.058 -6.594 17.535 hybrid contribution 0.798 -0.365 -0.055 0.879 sum -12.690 8.693 -6.650 16.758 Atomic orbital electron populations 1.22236 0.86494 1.02480 1.00876 1.60421 1.08750 1.14052 1.50833 1.20760 0.88942 0.89926 1.01825 1.19375 0.95894 1.04323 0.92349 1.20804 0.91825 0.99160 0.98733 1.20241 0.94830 1.06592 0.95035 1.18695 0.83943 1.04608 0.96296 1.19552 0.94213 1.07473 0.92449 1.21904 0.89909 1.13703 0.98863 1.22376 1.01113 1.02978 0.81813 1.44515 1.04657 1.60826 1.06672 1.21876 0.88114 0.98906 0.90724 1.19215 0.95439 0.91462 0.95239 1.21492 1.18524 0.93967 1.24421 0.91017 1.26025 0.99582 0.95073 0.98949 1.70127 1.43430 0.98834 1.44761 0.85351 0.78580 0.77936 0.78611 1.19818 1.20849 1.18121 1.20305 0.91015 0.98992 0.98390 0.95050 0.90893 0.91489 0.83824 0.89869 0.93125 0.84639 0.87466 0.81142 0.79586 0.88424 0.90549 0.99724 0.98936 0.92626 0.84193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.70 127.69 1.37 1.80 16 2 N -0.71 -14.77 6.84 -541.22 -3.70 -18.48 16 3 C 0.11 2.34 5.79 85.56 0.50 2.83 16 4 C -0.12 -3.20 5.36 -20.10 -0.11 -3.31 16 5 C -0.09 -2.66 9.66 22.30 0.22 -2.44 16 6 C -0.15 -5.45 10.00 22.37 0.22 -5.23 16 7 C 0.07 2.80 6.81 39.03 0.27 3.06 16 8 C -0.13 -4.51 6.37 -20.20 -0.13 -4.63 16 9 C -0.22 -6.69 11.08 23.51 0.26 -6.43 16 10 C 0.04 1.42 11.27 83.00 0.94 2.35 16 11 N -0.49 -18.97 2.78 -515.95 -1.43 -20.40 16 12 C 0.12 5.17 5.94 86.38 0.51 5.68 16 13 C 0.02 1.29 5.30 29.85 0.16 1.45 16 14 C -0.55 -30.31 9.11 25.60 0.23 -30.07 16 15 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 16 C 0.00 0.13 5.46 84.66 0.46 0.59 16 17 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 18 Si 0.97 43.47 29.54 68.60 2.03 45.49 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 22 C -0.07 -1.92 9.67 22.23 0.22 -1.70 16 23 H 0.03 0.40 8.14 -2.39 -0.02 0.39 16 24 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.34 7.02 8.81 -89.69 -0.79 6.23 16 27 H 0.08 1.60 8.08 -2.39 -0.02 1.58 16 28 H 0.05 0.88 8.08 -2.39 -0.02 0.86 16 29 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 30 H 0.11 4.11 8.06 -2.91 -0.02 4.09 16 31 H 0.17 3.95 8.06 -2.91 -0.02 3.93 16 32 H 0.19 4.93 8.06 -2.91 -0.02 4.91 16 33 H 0.10 3.61 8.11 -2.39 -0.02 3.59 16 34 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 35 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 36 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 37 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 38 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -67.84 324.56 2.53 -65.32 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.25 Total: 20.93 kcal Atomic # 6 Polarization: -41.17 SS G_CDS: 5.11 Total: -36.06 kcal Atomic # 7 Polarization: -90.83 SS G_CDS: -4.85 Total: -95.68 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -67.84 2.53 -65.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229719694.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.603 kcal (2) G-P(sol) polarization free energy of solvation -67.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds