Wall clock time and date at job start Mon Mar 30 2020 07:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47084 * 2 1 4 4 N 1.46903 * 109.47133 * 119.99743 * 2 1 3 5 5 C 1.46903 * 110.99925 * 85.00383 * 4 2 1 6 6 C 1.50694 * 109.47211 * 179.97438 * 5 4 2 7 7 C 1.38745 * 119.82217 * 269.97540 * 6 5 4 8 8 C 1.37897 * 120.65141 * 180.02562 * 7 6 5 9 9 C 1.38953 * 119.92087 * 359.97438 * 8 7 6 10 10 C 1.40693 * 119.45653 * 0.02562 * 9 8 7 11 11 C 1.46675 * 106.07894 * 180.02562 * 10 9 8 12 12 C 1.34309 * 107.04736 * 359.73637 * 11 10 9 13 13 N 1.37001 * 109.93174 * 0.42976 * 12 11 10 14 14 C 1.37205 * 125.09417 * 179.81052 * 13 12 11 15 15 H 1.07994 * 120.00308 * 159.04566 * 14 13 12 16 16 C 1.38856 * 119.99566 * 338.77957 * 14 13 12 17 17 N 1.31434 * 120.00153 * 349.29378 * 16 14 13 18 18 Si 1.86802 * 119.99999 * 169.29881 * 16 14 13 19 19 H 1.48506 * 109.47153 * 94.60076 * 18 16 14 20 20 H 1.48496 * 109.47249 * 214.60458 * 18 16 14 21 21 H 1.48498 * 109.47074 * 334.60345 * 18 16 14 22 22 C 1.37784 * 119.81704 * 89.99474 * 6 5 4 23 23 H 1.08995 * 109.47402 * 60.00093 * 1 2 3 24 24 H 1.09006 * 109.47406 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47279 * 299.99646 * 1 2 3 26 26 H 1.08998 * 109.47321 * 239.99889 * 2 1 3 27 27 H 1.09004 * 109.47117 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47014 * 299.99976 * 3 2 1 29 29 H 1.08998 * 109.47132 * 59.99773 * 3 2 1 30 30 H 1.00890 * 111.00113 * 321.04605 * 4 2 1 31 31 H 1.09001 * 109.47444 * 59.99710 * 5 4 2 32 32 H 1.09005 * 109.46951 * 299.99897 * 5 4 2 33 33 H 1.08011 * 119.67455 * 0.02562 * 7 6 5 34 34 H 1.08005 * 120.03894 * 180.02562 * 8 7 6 35 35 H 1.07994 * 126.47686 * 179.97438 * 11 10 9 36 36 H 1.08000 * 125.03251 * 180.25178 * 12 11 10 37 37 H 0.97010 * 119.99956 * 180.02562 * 17 16 14 38 38 H 1.07996 * 120.17025 * 359.96033 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0825 -2.1437 0.9807 6 6 2.5885 -2.8185 2.2295 7 6 3.9506 -3.0188 2.4020 8 6 4.4323 -3.6349 3.5378 9 6 3.5495 -4.0608 4.5227 10 6 2.1682 -3.8580 4.3484 11 6 1.5225 -4.4098 5.5442 12 6 2.4978 -4.8951 6.3299 13 7 3.7175 -4.6911 5.7401 14 6 4.9248 -5.0624 6.2760 15 1 5.7864 -5.1806 5.6358 16 6 5.0399 -5.2810 7.6424 17 7 4.0618 -4.9330 8.4484 18 14 6.5853 -6.0693 8.3352 19 1 7.5271 -5.0090 8.7757 20 1 6.2271 -6.9260 9.4941 21 1 7.2301 -6.8997 7.2865 22 6 1.6960 -3.2336 3.1937 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.4496 -0.4721 2.0022 31 1 2.7589 -2.3575 0.1531 32 1 1.0871 -2.5187 0.7426 33 1 4.6404 -2.6889 1.6391 34 1 5.4946 -3.7855 3.6620 35 1 0.4629 -4.4266 5.7518 36 1 2.3436 -5.3725 7.2863 37 1 4.1424 -5.0853 9.4031 38 1 0.6365 -3.0758 3.0564 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229724532.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:11 Heat of formation + Delta-G solvation = 45.346390 kcal Electronic energy + Delta-G solvation = -18398.030041 eV Core-core repulsion = 15626.090399 eV Total energy + Delta-G solvation = -2771.939642 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -39.98179 -37.66296 -35.96028 -33.26360 -31.69635 -30.78813 -28.47608 -27.70480 -27.16797 -25.14649 -23.63651 -21.44177 -20.77598 -19.97664 -19.50451 -17.57590 -15.66715 -15.58393 -15.26501 -14.76864 -14.56621 -14.38467 -13.61080 -13.35717 -13.23635 -12.98234 -12.75042 -12.35516 -12.18360 -11.97621 -11.73671 -11.66257 -11.39804 -11.28616 -11.18721 -10.90350 -10.79494 -10.60815 -10.45578 -10.19733 -9.78283 -9.19781 -8.55165 -8.19259 -7.01769 -6.85912 -6.54510 -4.27846 2.21291 2.61152 3.00489 3.03672 3.08792 3.81795 4.08380 4.38733 4.81534 4.87160 4.88382 5.08743 5.11531 5.28149 5.46790 5.53155 5.58508 5.75420 5.80496 5.82640 5.92795 5.98439 6.08595 6.11050 6.26471 6.42381 6.47624 6.54833 6.93068 7.08227 7.11880 7.15476 7.18890 7.27462 7.53615 7.54502 7.63909 7.70137 8.03928 8.20495 8.48182 9.02450 9.45504 10.29625 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.039657 B = 0.004128 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.892882 B = 6781.086547 C = 7115.004200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.076 3.924 3 C -0.139 4.139 4 N -0.680 5.680 5 C 0.116 3.884 6 C -0.140 4.140 7 C -0.113 4.113 8 C -0.111 4.111 9 C 0.056 3.944 10 C -0.118 4.118 11 C -0.285 4.285 12 C 0.086 3.914 13 N -0.292 5.292 14 C -0.340 4.340 15 H 0.105 0.895 16 C 0.041 3.959 17 N -0.854 5.854 18 Si 0.939 3.061 19 H -0.272 1.272 20 H -0.276 1.276 21 H -0.264 1.264 22 C -0.074 4.074 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.342 0.658 31 H 0.069 0.931 32 H 0.027 0.973 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.170 0.830 37 H 0.279 0.721 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.725 5.291 -10.527 12.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.035 4.035 3 C -0.197 4.197 4 N -0.311 5.311 5 C -0.012 4.012 6 C -0.142 4.142 7 C -0.134 4.134 8 C -0.131 4.131 9 C -0.056 4.056 10 C -0.124 4.124 11 C -0.309 4.309 12 C -0.049 4.049 13 N 0.045 4.955 14 C -0.467 4.467 15 H 0.123 0.877 16 C -0.167 4.167 17 N -0.486 5.486 18 Si 0.763 3.237 19 H -0.198 1.198 20 H -0.201 1.201 21 H -0.189 1.189 22 C -0.093 4.093 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.161 0.839 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.140 0.860 36 H 0.187 0.813 37 H 0.089 0.911 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.773 5.272 -10.267 11.870 hybrid contribution -0.305 -0.510 0.631 0.867 sum -3.078 4.762 -9.637 11.181 Atomic orbital electron populations 1.22529 0.97746 1.01822 1.02098 1.21568 0.92259 0.95580 0.94048 1.21762 1.01774 0.95136 1.00988 1.60690 1.57293 1.08017 1.05142 1.20686 0.98309 0.86383 0.95870 1.19018 0.93541 1.05007 0.96632 1.20229 0.94251 1.01838 0.97045 1.19854 0.97600 1.02199 0.93422 1.18389 0.94497 1.02117 0.90581 1.18981 0.92660 1.04897 0.95896 1.21271 0.97436 1.15450 0.96790 1.22079 0.82697 1.01046 0.99060 1.40236 1.05655 1.37681 1.11934 1.19837 0.87930 1.46712 0.92250 0.87748 1.25490 0.99651 0.95840 0.95670 1.69898 1.32656 1.40988 1.05054 0.85719 0.79950 0.79153 0.78836 1.19766 1.20098 1.18854 1.20062 0.97328 0.99136 0.92788 0.92429 0.92759 0.92465 0.90842 0.92049 0.92968 0.92806 0.83903 0.91279 0.95473 0.87553 0.87682 0.85988 0.81340 0.91084 0.88277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 9.16 37.16 0.34 -1.44 16 2 C 0.08 0.83 3.20 -67.71 -0.22 0.61 16 3 C -0.14 -1.39 9.52 37.16 0.35 -1.04 16 4 N -0.68 -9.31 6.24 -107.99 -0.67 -9.99 16 5 C 0.12 1.70 5.60 -4.98 -0.03 1.67 16 6 C -0.14 -2.58 5.39 -104.60 -0.56 -3.15 16 7 C -0.11 -2.21 9.67 -39.52 -0.38 -2.59 16 8 C -0.11 -2.46 9.95 -39.44 -0.39 -2.86 16 9 C 0.06 1.41 6.75 -83.84 -0.57 0.84 16 10 C -0.12 -2.81 6.37 -105.09 -0.67 -3.48 16 11 C -0.29 -6.78 11.09 -37.56 -0.42 -7.20 16 12 C 0.09 2.21 9.89 -16.63 -0.16 2.04 16 13 N -0.29 -7.82 2.92 -59.73 -0.17 -8.00 16 14 C -0.34 -9.00 9.93 -14.92 -0.15 -9.15 16 15 H 0.10 2.64 7.85 -52.49 -0.41 2.23 16 16 C 0.04 1.04 5.35 -17.49 -0.09 0.95 16 17 N -0.85 -22.22 10.85 55.49 0.60 -21.62 16 18 Si 0.94 19.13 29.57 -169.99 -5.03 14.11 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 20 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 22 C -0.07 -1.49 9.74 -39.27 -0.38 -1.87 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.55 7.45 -51.93 -0.39 0.16 16 25 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 26 H 0.07 0.79 7.80 -51.93 -0.40 0.39 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.34 4.80 8.46 -39.30 -0.33 4.46 16 31 H 0.07 0.96 8.00 -51.93 -0.42 0.55 16 32 H 0.03 0.38 7.37 -51.93 -0.38 -0.01 16 33 H 0.11 1.82 8.06 -52.48 -0.42 1.40 16 34 H 0.11 2.22 8.06 -52.48 -0.42 1.80 16 35 H 0.12 2.55 8.06 -52.49 -0.42 2.12 16 36 H 0.17 4.34 6.35 -52.49 -0.33 4.01 16 37 H 0.28 6.69 8.31 -40.82 -0.34 6.35 16 38 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 317.02 15.07 4.78 4.78 Total: -1.00 -27.67 317.02 -9.43 -37.10 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -5.61 Total: 10.28 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: -3.33 Total: -26.66 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: -0.25 Total: -39.60 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.67 -9.43 -37.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229724532.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.444 kcal (2) G-P(sol) polarization free energy of solvation -27.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds