Wall clock time and date at job start Mon Mar 30 2020 07:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47084 * 2 1 4 4 N 1.46903 * 109.47133 * 119.99743 * 2 1 3 5 5 C 1.46903 * 110.99925 * 85.00383 * 4 2 1 6 6 C 1.50694 * 109.47211 * 179.97438 * 5 4 2 7 7 C 1.38745 * 119.82217 * 269.97540 * 6 5 4 8 8 C 1.37897 * 120.65141 * 180.02562 * 7 6 5 9 9 C 1.38953 * 119.92087 * 359.97438 * 8 7 6 10 10 C 1.40693 * 119.45653 * 0.02562 * 9 8 7 11 11 C 1.46675 * 106.07894 * 180.02562 * 10 9 8 12 12 C 1.34309 * 107.04736 * 359.73637 * 11 10 9 13 13 N 1.37001 * 109.93174 * 0.42976 * 12 11 10 14 14 C 1.37205 * 125.09417 * 179.81052 * 13 12 11 15 15 H 1.07994 * 120.00308 * 159.04566 * 14 13 12 16 16 C 1.38856 * 119.99566 * 338.77957 * 14 13 12 17 17 N 1.31434 * 120.00153 * 349.29378 * 16 14 13 18 18 Si 1.86802 * 119.99999 * 169.29881 * 16 14 13 19 19 H 1.48506 * 109.47153 * 94.60076 * 18 16 14 20 20 H 1.48496 * 109.47249 * 214.60458 * 18 16 14 21 21 H 1.48498 * 109.47074 * 334.60345 * 18 16 14 22 22 C 1.37784 * 119.81704 * 89.99474 * 6 5 4 23 23 H 1.08995 * 109.47402 * 60.00093 * 1 2 3 24 24 H 1.09006 * 109.47406 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47279 * 299.99646 * 1 2 3 26 26 H 1.08998 * 109.47321 * 239.99889 * 2 1 3 27 27 H 1.09004 * 109.47117 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47014 * 299.99976 * 3 2 1 29 29 H 1.08998 * 109.47132 * 59.99773 * 3 2 1 30 30 H 1.00890 * 111.00113 * 321.04605 * 4 2 1 31 31 H 1.09001 * 109.47444 * 59.99710 * 5 4 2 32 32 H 1.09005 * 109.46951 * 299.99897 * 5 4 2 33 33 H 1.08011 * 119.67455 * 0.02562 * 7 6 5 34 34 H 1.08005 * 120.03894 * 180.02562 * 8 7 6 35 35 H 1.07994 * 126.47686 * 179.97438 * 11 10 9 36 36 H 1.08000 * 125.03251 * 180.25178 * 12 11 10 37 37 H 0.97010 * 119.99956 * 180.02562 * 17 16 14 38 38 H 1.07996 * 120.17025 * 359.96033 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0825 -2.1437 0.9807 6 6 2.5885 -2.8185 2.2295 7 6 3.9506 -3.0188 2.4020 8 6 4.4323 -3.6349 3.5378 9 6 3.5495 -4.0608 4.5227 10 6 2.1682 -3.8580 4.3484 11 6 1.5225 -4.4098 5.5442 12 6 2.4978 -4.8951 6.3299 13 7 3.7175 -4.6911 5.7401 14 6 4.9248 -5.0624 6.2760 15 1 5.7864 -5.1806 5.6358 16 6 5.0399 -5.2810 7.6424 17 7 4.0618 -4.9330 8.4484 18 14 6.5853 -6.0693 8.3352 19 1 7.5271 -5.0090 8.7757 20 1 6.2271 -6.9260 9.4941 21 1 7.2301 -6.8997 7.2865 22 6 1.6960 -3.2336 3.1937 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.4496 -0.4721 2.0022 31 1 2.7589 -2.3575 0.1531 32 1 1.0871 -2.5187 0.7426 33 1 4.6404 -2.6889 1.6391 34 1 5.4946 -3.7855 3.6620 35 1 0.4629 -4.4266 5.7518 36 1 2.3436 -5.3725 7.2863 37 1 4.1424 -5.0853 9.4031 38 1 0.6365 -3.0758 3.0564 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229724532.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:08 Heat of formation + Delta-G solvation = 31.082793 kcal Electronic energy + Delta-G solvation = -18398.648557 eV Core-core repulsion = 15626.090399 eV Total energy + Delta-G solvation = -2772.558158 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.77054 -38.90612 -37.34429 -35.08440 -33.03620 -32.49302 -30.03855 -29.34663 -27.92421 -26.91924 -25.09436 -23.12129 -21.81690 -21.65573 -21.15135 -19.39389 -17.54217 -16.94777 -16.40585 -16.26096 -16.09549 -15.68348 -15.19711 -14.76557 -14.57931 -14.42730 -14.08822 -13.81225 -13.57773 -13.26267 -13.06939 -12.93282 -12.85255 -12.82856 -12.61049 -12.19151 -12.09468 -12.05679 -11.82182 -11.58913 -11.45134 -11.03171 -10.32472 -9.23945 -8.77108 -8.71805 -8.38289 -6.24307 0.50832 0.94863 1.35046 1.39771 1.51121 2.10218 2.23159 2.89989 3.06317 3.19483 3.58721 4.03773 4.07819 4.16313 4.31507 4.37205 4.48488 4.55703 4.64064 4.76370 4.81003 4.83330 4.85537 5.00311 5.03816 5.06507 5.13077 5.30674 5.33446 5.36086 5.40017 5.45085 5.48375 5.76886 5.80322 5.97451 6.24561 6.33341 6.45528 6.55391 6.56913 7.14263 7.56034 8.42749 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.039657 B = 0.004128 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.892882 B = 6781.086547 C = 7115.004200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.075 3.925 3 C -0.136 4.136 4 N -0.691 5.691 5 C 0.122 3.878 6 C -0.126 4.126 7 C -0.100 4.100 8 C -0.135 4.135 9 C 0.022 3.978 10 C -0.141 4.141 11 C -0.285 4.285 12 C 0.056 3.944 13 N -0.315 5.315 14 C -0.375 4.375 15 H 0.104 0.896 16 C -0.001 4.001 17 N -0.885 5.885 18 Si 1.012 2.988 19 H -0.267 1.267 20 H -0.267 1.267 21 H -0.258 1.258 22 C -0.076 4.076 23 H 0.072 0.928 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.339 0.661 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.136 0.864 34 H 0.106 0.894 35 H 0.146 0.854 36 H 0.158 0.842 37 H 0.284 0.716 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.894 6.228 -12.595 14.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.034 4.034 3 C -0.194 4.194 4 N -0.323 5.323 5 C -0.006 4.006 6 C -0.128 4.128 7 C -0.120 4.120 8 C -0.155 4.155 9 C -0.089 4.089 10 C -0.146 4.146 11 C -0.310 4.310 12 C -0.078 4.078 13 N 0.020 4.980 14 C -0.502 4.502 15 H 0.121 0.879 16 C -0.205 4.205 17 N -0.518 5.518 18 Si 0.833 3.167 19 H -0.192 1.192 20 H -0.192 1.192 21 H -0.182 1.182 22 C -0.095 4.095 23 H 0.091 0.909 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.158 0.842 31 H 0.101 0.899 32 H 0.060 0.940 33 H 0.154 0.846 34 H 0.124 0.876 35 H 0.164 0.836 36 H 0.175 0.825 37 H 0.094 0.906 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.958 6.224 -12.362 14.153 hybrid contribution -0.324 -0.678 1.091 1.325 sum -3.282 5.546 -11.271 12.983 Atomic orbital electron populations 1.22467 0.96635 1.01817 1.02798 1.21644 0.93150 0.95692 0.92937 1.21743 1.01143 0.94755 1.01756 1.60666 1.58001 1.07328 1.06263 1.20639 0.99237 0.86848 0.93855 1.19473 0.92877 1.03086 0.97354 1.20642 0.95479 0.99620 0.96279 1.20090 0.97599 1.03613 0.94199 1.18960 0.96025 1.03121 0.90821 1.19349 0.92257 1.05919 0.97115 1.21595 0.98245 1.14518 0.96607 1.22098 0.83439 1.02829 0.99416 1.40430 1.05781 1.38917 1.12828 1.20167 0.88349 1.48442 0.93198 0.87860 1.26508 1.02983 0.95643 0.95384 1.69996 1.34559 1.41715 1.05488 0.84653 0.75752 0.78220 0.78122 1.19163 1.19182 1.18218 1.20379 0.99092 0.98238 0.91775 0.90879 0.93089 0.92672 0.90238 0.93001 0.91039 0.93242 0.84237 0.89935 0.94030 0.84607 0.87632 0.83586 0.82503 0.90606 0.85658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.87 9.16 71.98 0.66 -2.22 16 2 C 0.08 1.40 3.20 44.91 0.14 1.54 16 3 C -0.14 -2.35 9.52 71.98 0.69 -1.66 16 4 N -0.69 -16.79 6.24 -495.57 -3.09 -19.89 16 5 C 0.12 3.15 5.60 85.55 0.48 3.62 16 6 C -0.13 -4.34 5.39 -19.85 -0.11 -4.44 16 7 C -0.10 -3.72 9.67 22.31 0.22 -3.51 16 8 C -0.13 -6.05 9.95 22.36 0.22 -5.82 16 9 C 0.02 1.11 6.75 38.92 0.26 1.37 16 10 C -0.14 -6.72 6.37 -20.17 -0.13 -6.85 16 11 C -0.28 -13.85 11.09 23.58 0.26 -13.59 16 12 C 0.06 3.03 9.89 82.99 0.82 3.85 16 13 N -0.32 -17.65 2.92 -342.89 -1.00 -18.65 16 14 C -0.37 -20.70 9.93 84.00 0.83 -19.86 16 15 H 0.10 5.47 7.85 -2.91 -0.02 5.44 16 16 C 0.00 -0.03 5.35 84.90 0.45 0.42 16 17 N -0.88 -47.68 10.85 21.65 0.23 -47.44 16 18 Si 1.01 39.80 29.57 68.60 2.03 41.82 16 19 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 20 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 21 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 22 C -0.08 -2.93 9.74 22.47 0.22 -2.71 16 23 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.05 0.86 7.45 -2.38 -0.02 0.84 16 25 H 0.05 0.91 8.13 -2.39 -0.02 0.90 16 26 H 0.08 1.41 7.80 -2.39 -0.02 1.39 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.34 8.61 8.46 -89.70 -0.76 7.85 16 31 H 0.08 1.95 8.00 -2.39 -0.02 1.93 16 32 H 0.04 0.98 7.37 -2.38 -0.02 0.96 16 33 H 0.14 4.21 8.06 -2.90 -0.02 4.19 16 34 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 35 H 0.15 6.10 8.06 -2.91 -0.02 6.08 16 36 H 0.16 8.60 6.35 -2.91 -0.02 8.58 16 37 H 0.28 14.00 8.31 -92.70 -0.77 13.23 16 38 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -61.58 317.02 3.48 -58.10 By element: Atomic # 1 Polarization: 35.62 SS G_CDS: 0.29 Total: 35.90 kcal Atomic # 6 Polarization: -54.87 SS G_CDS: 5.02 Total: -49.85 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -3.86 Total: -85.98 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.82 kcal Total: -61.58 3.48 -58.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229724532.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.185 kcal (2) G-P(sol) polarization free energy of solvation -61.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds