Wall clock time and date at job start Mon Mar 30 2020 07:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 111.00222 * 2 1 4 4 C 1.50704 * 109.47233 * 180.02562 * 3 2 1 5 5 C 1.38830 * 119.66437 * 90.00083 * 4 3 2 6 6 C 1.36626 * 120.52512 * 179.97438 * 5 4 3 7 7 C 1.39626 * 119.76771 * 0.02562 * 6 5 4 8 8 C 1.46487 * 134.03561 * 179.97438 * 7 6 5 9 9 C 1.34241 * 106.99924 * 180.02562 * 8 7 6 10 10 N 1.36829 * 109.92675 * 0.02562 * 9 8 7 11 11 C 1.46500 * 125.06244 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47473 * 265.02888 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.37690 * 109.87684 * 0.26857 * 10 9 8 22 22 C 1.37741 * 119.66408 * 269.98322 * 4 3 2 23 23 H 1.08991 * 109.47027 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46829 * 300.00231 * 1 2 3 25 25 H 1.09004 * 109.46979 * 59.99433 * 1 2 3 26 26 H 1.00904 * 110.99937 * 236.04849 * 2 1 3 27 27 H 1.09003 * 109.46543 * 60.00409 * 3 2 1 28 28 H 1.09000 * 109.47207 * 300.00202 * 3 2 1 29 29 H 1.08005 * 119.73583 * 359.97438 * 5 4 3 30 30 H 1.08004 * 120.11316 * 180.02562 * 6 5 4 31 31 H 1.08005 * 126.50222 * 0.02562 * 8 7 6 32 32 H 1.07993 * 125.03751 * 180.02562 * 9 8 7 33 33 H 1.09002 * 109.47129 * 145.02630 * 11 10 9 34 34 H 1.08998 * 109.46845 * 25.03437 * 11 10 9 35 35 H 1.09002 * 109.47153 * 59.99757 * 12 11 10 36 36 H 1.09001 * 109.46832 * 299.99948 * 12 11 10 37 37 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 38 38 H 1.07996 * 120.11582 * 0.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5020 1.3312 -0.0006 5 6 4.1884 1.3130 -1.2073 6 6 5.5540 1.2771 -1.2284 7 6 6.2656 1.2579 -0.0272 8 6 7.6902 1.2198 0.3118 9 6 7.7748 1.2167 1.6516 10 7 6.5208 1.2492 2.1981 11 6 6.2283 1.2554 3.6336 12 6 5.9662 -0.1757 4.1070 13 6 5.6660 -0.1693 5.5838 14 1 5.6620 0.7624 6.1300 15 6 5.3952 -1.3528 6.2373 16 7 5.3995 -2.4872 5.5720 17 14 5.0224 -1.3447 8.0677 18 1 3.8211 -0.5103 8.3245 19 1 4.7681 -2.7338 8.5271 20 1 6.1819 -0.7839 8.8067 21 6 5.5746 1.2685 1.1980 22 6 4.1840 1.3131 1.1960 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8306 -0.5261 -0.7814 27 1 1.6460 1.8947 0.8901 28 1 1.6460 1.8948 -0.8900 29 1 3.6384 1.3274 -2.1367 30 1 6.0812 1.2636 -2.1709 31 1 8.5159 1.1982 -0.3841 32 1 8.6960 1.1923 2.2146 33 1 5.3465 1.8677 3.8221 34 1 7.0793 1.6674 4.1760 35 1 6.8481 -0.7880 3.9185 36 1 5.1152 -0.5876 3.5646 37 1 5.2094 -3.3199 6.0319 38 1 3.6410 1.3273 2.1294 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229731246.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:58 Heat of formation + Delta-G solvation = 49.731095 kcal Electronic energy + Delta-G solvation = -18461.158864 eV Core-core repulsion = 15689.409357 eV Total energy + Delta-G solvation = -2771.749507 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.83207 -37.60732 -35.35370 -33.87459 -32.22262 -30.50096 -29.53988 -28.27193 -25.98024 -24.77409 -23.35557 -22.29522 -21.19224 -20.53310 -19.33886 -16.85769 -16.24785 -15.97628 -15.74528 -14.72316 -14.55737 -14.42901 -14.11122 -13.87956 -13.75962 -13.20399 -12.86784 -12.55144 -12.27996 -11.98379 -11.80974 -11.75169 -11.54298 -11.27616 -10.99470 -10.98866 -10.60389 -10.40789 -10.12582 -9.79635 -9.34527 -9.09802 -8.45708 -8.41362 -7.67274 -7.12306 -6.09370 -4.15341 1.52756 2.01827 3.17883 3.27959 3.32810 3.34261 3.48992 4.15466 4.38432 4.58718 4.97548 5.10004 5.21176 5.26280 5.29957 5.39022 5.42221 5.53028 5.59714 5.72659 5.80242 5.86121 5.98576 6.10432 6.16146 6.18646 6.34075 6.46709 6.54572 6.86028 6.96311 6.99123 7.20503 7.26389 7.40377 7.49174 7.53354 7.77063 7.80100 7.95049 8.23225 8.90373 9.49686 11.01482 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.015214 B = 0.005903 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.951531 B = 4742.271407 C = 6221.546786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.688 5.688 3 C 0.106 3.894 4 C -0.082 4.082 5 C -0.147 4.147 6 C -0.078 4.078 7 C -0.112 4.112 8 C -0.228 4.228 9 C 0.064 3.936 10 N -0.468 5.468 11 C 0.107 3.893 12 C 0.012 3.988 13 C -0.530 4.530 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.888 5.888 17 Si 0.896 3.104 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.102 3.898 22 C -0.090 4.090 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.017 0.983 26 H 0.343 0.657 27 H 0.077 0.923 28 H 0.034 0.966 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.139 0.861 32 H 0.163 0.837 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.021 0.979 36 H 0.025 0.975 37 H 0.264 0.736 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.992 7.949 -12.508 15.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.319 5.319 3 C -0.023 4.023 4 C -0.084 4.084 5 C -0.166 4.166 6 C -0.097 4.097 7 C -0.117 4.117 8 C -0.253 4.253 9 C -0.064 4.064 10 N -0.148 5.148 11 C -0.013 4.013 12 C -0.025 4.025 13 C -0.569 4.569 14 H 0.076 0.924 15 C -0.141 4.141 16 N -0.526 5.526 17 Si 0.724 3.276 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.006 4.006 22 C -0.111 4.111 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.036 0.964 26 H 0.161 0.839 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.129 0.871 30 H 0.133 0.867 31 H 0.157 0.843 32 H 0.180 0.820 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.040 0.960 36 H 0.043 0.957 37 H 0.073 0.927 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.039 7.693 -11.415 14.097 hybrid contribution -0.318 0.016 0.210 0.382 sum -3.358 7.709 -11.205 14.010 Atomic orbital electron populations 1.22199 0.87957 1.01855 1.00112 1.60383 1.07224 1.13888 1.50390 1.20818 0.90996 0.89723 1.00723 1.19196 0.94102 1.02738 0.92389 1.20322 0.93967 1.05713 0.96630 1.20067 0.93387 1.00301 0.95951 1.19211 0.93374 1.06697 0.92388 1.21501 0.94255 1.15393 0.94167 1.21835 0.88245 1.02482 0.93844 1.44553 1.04166 1.59307 1.06752 1.22280 1.01332 1.02699 0.74958 1.19438 0.98049 0.88693 0.96346 1.20970 1.49288 0.93382 0.93219 0.92445 1.24999 0.95075 0.95485 0.98502 1.69966 1.48296 0.98063 1.36248 0.86593 0.78916 0.77156 0.84964 1.20094 1.21146 1.20143 1.18250 0.90928 1.03668 0.87726 1.19928 0.90201 1.02738 0.98195 0.91431 0.91680 0.96419 0.83942 0.90435 0.94752 0.87090 0.86748 0.84280 0.81966 0.90811 0.90378 0.96023 0.95689 0.92672 0.86106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.70 60.07 0.64 0.95 16 2 N -0.69 -9.15 6.84 -122.42 -0.84 -9.99 16 3 C 0.11 1.38 5.79 -4.97 -0.03 1.35 16 4 C -0.08 -1.27 5.39 -104.58 -0.56 -1.83 16 5 C -0.15 -2.09 9.61 -39.94 -0.38 -2.47 16 6 C -0.08 -1.19 10.05 -39.65 -0.40 -1.59 16 7 C -0.11 -1.96 6.37 -105.14 -0.67 -2.63 16 8 C -0.23 -3.68 11.08 -37.67 -0.42 -4.10 16 9 C 0.06 1.08 11.27 -16.73 -0.19 0.89 16 10 N -0.47 -9.04 2.78 -114.43 -0.32 -9.36 16 11 C 0.11 2.19 5.94 -4.04 -0.02 2.17 16 12 C 0.01 0.32 5.30 -27.88 -0.15 0.17 16 13 C -0.53 -14.57 9.11 -34.44 -0.31 -14.89 16 14 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 17 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 C 0.10 1.96 6.81 -83.98 -0.57 1.39 16 22 C -0.09 -1.63 9.63 -39.43 -0.38 -2.01 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.34 4.23 8.81 -39.29 -0.35 3.88 16 27 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 28 H 0.03 0.39 8.08 -51.93 -0.42 -0.03 16 29 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 30 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 31 H 0.14 1.83 8.06 -52.48 -0.42 1.41 16 32 H 0.16 2.25 8.06 -52.49 -0.42 1.83 16 33 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.08 1.46 8.12 -51.93 -0.42 1.04 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.12 2.26 8.06 -52.49 -0.42 1.83 16 LS Contribution 324.56 15.07 4.89 4.89 Total: -1.00 -31.12 324.56 -9.89 -41.01 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -5.80 Total: 4.02 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -3.54 Total: -20.95 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: -0.42 Total: -45.23 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.12 -9.89 -41.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229731246.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.739 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds