Wall clock time and date at job start Mon Mar 30 2020 07:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 111.00222 * 2 1 4 4 C 1.50704 * 109.47233 * 180.02562 * 3 2 1 5 5 C 1.38830 * 119.66437 * 90.00083 * 4 3 2 6 6 C 1.36626 * 120.52512 * 179.97438 * 5 4 3 7 7 C 1.39626 * 119.76771 * 0.02562 * 6 5 4 8 8 C 1.46487 * 134.03561 * 179.97438 * 7 6 5 9 9 C 1.34241 * 106.99924 * 180.02562 * 8 7 6 10 10 N 1.36829 * 109.92675 * 0.02562 * 9 8 7 11 11 C 1.46500 * 125.06244 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47473 * 265.02888 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.37690 * 109.87684 * 0.26857 * 10 9 8 22 22 C 1.37741 * 119.66408 * 269.98322 * 4 3 2 23 23 H 1.08991 * 109.47027 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46829 * 300.00231 * 1 2 3 25 25 H 1.09004 * 109.46979 * 59.99433 * 1 2 3 26 26 H 1.00904 * 110.99937 * 236.04849 * 2 1 3 27 27 H 1.09003 * 109.46543 * 60.00409 * 3 2 1 28 28 H 1.09000 * 109.47207 * 300.00202 * 3 2 1 29 29 H 1.08005 * 119.73583 * 359.97438 * 5 4 3 30 30 H 1.08004 * 120.11316 * 180.02562 * 6 5 4 31 31 H 1.08005 * 126.50222 * 0.02562 * 8 7 6 32 32 H 1.07993 * 125.03751 * 180.02562 * 9 8 7 33 33 H 1.09002 * 109.47129 * 145.02630 * 11 10 9 34 34 H 1.08998 * 109.46845 * 25.03437 * 11 10 9 35 35 H 1.09002 * 109.47153 * 59.99757 * 12 11 10 36 36 H 1.09001 * 109.46832 * 299.99948 * 12 11 10 37 37 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 38 38 H 1.07996 * 120.11582 * 0.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5020 1.3312 -0.0006 5 6 4.1884 1.3130 -1.2073 6 6 5.5540 1.2771 -1.2284 7 6 6.2656 1.2579 -0.0272 8 6 7.6902 1.2198 0.3118 9 6 7.7748 1.2167 1.6516 10 7 6.5208 1.2492 2.1981 11 6 6.2283 1.2554 3.6336 12 6 5.9662 -0.1757 4.1070 13 6 5.6660 -0.1693 5.5838 14 1 5.6620 0.7624 6.1300 15 6 5.3952 -1.3528 6.2373 16 7 5.3995 -2.4872 5.5720 17 14 5.0224 -1.3447 8.0677 18 1 3.8211 -0.5103 8.3245 19 1 4.7681 -2.7338 8.5271 20 1 6.1819 -0.7839 8.8067 21 6 5.5746 1.2685 1.1980 22 6 4.1840 1.3131 1.1960 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8306 -0.5261 -0.7814 27 1 1.6460 1.8947 0.8901 28 1 1.6460 1.8948 -0.8900 29 1 3.6384 1.3274 -2.1367 30 1 6.0812 1.2636 -2.1709 31 1 8.5159 1.1982 -0.3841 32 1 8.6960 1.1923 2.2146 33 1 5.3465 1.8677 3.8221 34 1 7.0793 1.6674 4.1760 35 1 6.8481 -0.7880 3.9185 36 1 5.1152 -0.5876 3.5646 37 1 5.2094 -3.3199 6.0319 38 1 3.6410 1.3273 2.1294 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229731246.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:57 Heat of formation + Delta-G solvation = 31.492707 kcal Electronic energy + Delta-G solvation = -18461.949739 eV Core-core repulsion = 15689.409357 eV Total energy + Delta-G solvation = -2772.540383 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.14886 -38.80963 -36.54773 -35.68679 -33.93927 -31.97778 -30.72956 -29.90588 -27.05735 -26.62895 -24.39201 -23.84202 -22.80096 -21.78000 -20.70369 -18.76601 -17.64842 -17.31021 -16.96848 -16.65177 -15.73068 -15.62175 -15.38002 -15.26109 -15.08469 -14.45883 -14.35525 -14.21204 -13.84725 -13.43227 -12.97128 -12.92649 -12.83946 -12.79558 -12.64707 -12.41255 -12.22550 -12.03068 -11.64693 -11.59799 -11.42473 -10.64200 -10.45375 -9.38579 -8.96468 -8.46128 -8.25307 -6.41115 0.25789 0.76324 1.38554 1.42177 1.50133 1.87086 2.09296 2.39087 2.95445 3.07277 3.55361 3.75649 3.91637 4.02215 4.06211 4.24676 4.33567 4.44519 4.51517 4.57664 4.62271 4.66275 4.69422 4.70790 4.90401 4.94924 5.03553 5.12140 5.21697 5.33505 5.39462 5.63264 5.68779 5.74105 5.95651 6.00015 6.04218 6.10095 6.43403 6.46538 6.51770 6.75331 7.29691 8.85460 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.015214 B = 0.005903 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.951531 B = 4742.271407 C = 6221.546786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.713 5.713 3 C 0.109 3.891 4 C -0.074 4.074 5 C -0.143 4.143 6 C -0.076 4.076 7 C -0.133 4.133 8 C -0.220 4.220 9 C 0.042 3.958 10 N -0.486 5.486 11 C 0.125 3.875 12 C 0.026 3.974 13 C -0.546 4.546 14 H 0.071 0.929 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.972 3.028 18 H -0.266 1.266 19 H -0.284 1.284 20 H -0.261 1.261 21 C 0.069 3.931 22 C -0.125 4.125 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.038 0.962 26 H 0.348 0.652 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.172 0.828 32 H 0.187 0.813 33 H 0.074 0.926 34 H 0.098 0.902 35 H -0.008 1.008 36 H -0.017 1.017 37 H 0.265 0.735 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.087 8.990 -13.608 16.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.345 5.345 3 C -0.019 4.019 4 C -0.076 4.076 5 C -0.162 4.162 6 C -0.094 4.094 7 C -0.138 4.138 8 C -0.244 4.244 9 C -0.083 4.083 10 N -0.167 5.167 11 C 0.004 3.996 12 C -0.012 4.012 13 C -0.585 4.585 14 H 0.089 0.911 15 C -0.196 4.196 16 N -0.571 5.571 17 Si 0.795 3.205 18 H -0.191 1.191 19 H -0.210 1.210 20 H -0.186 1.186 21 C -0.038 4.038 22 C -0.146 4.146 23 H 0.091 0.909 24 H 0.078 0.922 25 H 0.057 0.943 26 H 0.166 0.834 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.166 0.834 30 H 0.165 0.835 31 H 0.189 0.811 32 H 0.204 0.796 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.010 0.990 36 H 0.001 0.999 37 H 0.074 0.926 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.125 8.756 -12.540 15.610 hybrid contribution -0.339 -0.324 0.416 0.627 sum -3.464 8.432 -12.123 15.168 Atomic orbital electron populations 1.22220 0.86366 1.02517 1.00836 1.60340 1.08935 1.14081 1.51114 1.20804 0.89396 0.90050 1.01661 1.19546 0.95479 1.00599 0.91964 1.20731 0.94012 1.04082 0.97385 1.20510 0.93909 0.98676 0.96345 1.19656 0.94197 1.07326 0.92647 1.21928 0.94542 1.13625 0.94317 1.22381 0.88201 1.03024 0.94733 1.44507 1.05273 1.60926 1.05993 1.21862 1.02201 0.98950 0.76575 1.19199 0.94838 0.91516 0.95673 1.21450 1.48764 0.94054 0.94189 0.91062 1.26034 0.94691 0.94976 1.03935 1.70126 1.49602 0.98868 1.38527 0.85406 0.79335 0.77298 0.78451 1.19058 1.20982 1.18585 1.18677 0.91508 1.04881 0.88712 1.19999 0.90303 1.05708 0.98592 0.90861 0.92189 0.94336 0.83423 0.91219 0.91974 0.83393 0.83459 0.81054 0.79615 0.90785 0.88371 0.98958 0.99901 0.92628 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.70 127.69 1.37 1.96 16 2 N -0.71 -18.40 6.84 -541.22 -3.70 -22.10 16 3 C 0.11 2.74 5.79 85.56 0.50 3.23 16 4 C -0.07 -2.25 5.39 -19.84 -0.11 -2.36 16 5 C -0.14 -3.71 9.61 22.03 0.21 -3.50 16 6 C -0.08 -2.12 10.05 22.23 0.22 -1.89 16 7 C -0.13 -4.58 6.37 -20.20 -0.13 -4.71 16 8 C -0.22 -6.79 11.08 23.51 0.26 -6.53 16 9 C 0.04 1.42 11.27 83.00 0.94 2.36 16 10 N -0.49 -19.34 2.78 -515.93 -1.43 -20.77 16 11 C 0.13 5.30 5.94 86.38 0.51 5.81 16 12 C 0.03 1.38 5.30 29.85 0.16 1.54 16 13 C -0.55 -30.78 9.11 25.60 0.23 -30.54 16 14 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 15 C 0.00 0.13 5.46 84.66 0.46 0.59 16 16 N -0.93 -57.76 13.29 21.45 0.28 -57.48 16 17 Si 0.97 43.94 29.54 68.60 2.03 45.96 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 21 C 0.07 2.74 6.81 39.03 0.27 3.00 16 22 C -0.12 -4.75 9.63 22.37 0.22 -4.53 16 23 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 26 H 0.35 8.14 8.81 -89.69 -0.79 7.35 16 27 H 0.07 1.83 8.08 -2.39 -0.02 1.81 16 28 H 0.06 1.22 8.08 -2.39 -0.02 1.20 16 29 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 30 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 31 H 0.17 4.01 8.06 -2.91 -0.02 3.99 16 32 H 0.19 5.02 8.06 -2.91 -0.02 5.00 16 33 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.10 3.70 8.12 -2.39 -0.02 3.68 16 35 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 36 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 37 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 38 H 0.10 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -69.94 324.56 2.53 -67.41 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 0.25 Total: 22.54 kcal Atomic # 6 Polarization: -40.67 SS G_CDS: 5.11 Total: -35.56 kcal Atomic # 7 Polarization: -95.50 SS G_CDS: -4.85 Total: -100.35 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -69.94 2.53 -67.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229731246.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.904 kcal (2) G-P(sol) polarization free energy of solvation -69.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds