Wall clock time and date at job start Mon Mar 30 2020 07:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46597 * 2 1 4 4 N 1.46902 * 109.47108 * 179.97438 * 3 2 1 5 5 C 1.46895 * 111.00198 * 180.02562 * 4 3 2 6 6 C 1.50705 * 109.47330 * 180.02562 * 5 4 3 7 7 C 1.38751 * 119.67671 * 89.99522 * 6 5 4 8 8 C 1.37777 * 120.36419 * 180.02562 * 7 6 5 9 9 C 1.39521 * 119.65305 * 0.02562 * 8 7 6 10 10 C 1.46665 * 133.96518 * 179.97438 * 9 8 7 11 11 C 1.34303 * 107.05010 * 180.26597 * 10 9 8 12 12 N 1.37008 * 109.92675 * 359.60591 * 11 10 9 13 13 C 1.37206 * 125.08697 * 180.17161 * 12 11 10 14 14 H 1.07994 * 119.99948 * 201.23547 * 13 12 11 15 15 C 1.38858 * 119.99997 * 21.22641 * 13 12 11 16 16 N 1.31437 * 119.99828 * 10.71540 * 15 13 12 17 17 Si 1.86804 * 119.99848 * 190.70625 * 15 13 12 18 18 H 1.48499 * 109.47156 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46727 * 120.00720 * 17 15 13 20 20 H 1.48501 * 109.47119 * 240.00643 * 17 15 13 21 21 C 1.38108 * 109.82078 * 0.40824 * 12 11 10 22 22 C 1.37896 * 119.67596 * 270.02627 * 6 5 4 23 23 H 1.09003 * 109.47227 * 60.00140 * 1 2 3 24 24 H 1.09004 * 109.46668 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47482 * 299.99619 * 1 2 3 26 26 H 1.08997 * 109.47052 * 240.00635 * 2 1 3 27 27 H 1.08994 * 109.47025 * 120.00025 * 2 1 3 28 28 H 1.09003 * 109.47332 * 60.00425 * 3 2 1 29 29 H 1.08994 * 109.47453 * 299.99762 * 3 2 1 30 30 H 1.00898 * 110.99825 * 56.04737 * 4 3 2 31 31 H 1.08996 * 109.47165 * 60.00146 * 5 4 3 32 32 H 1.09003 * 109.47349 * 299.99955 * 5 4 3 33 33 H 1.07996 * 119.81556 * 0.02562 * 7 6 5 34 34 H 1.08002 * 120.17461 * 180.02562 * 8 7 6 35 35 H 1.08000 * 126.47293 * 0.02562 * 10 9 8 36 36 H 1.07993 * 125.03088 * 179.76756 * 11 10 9 37 37 H 0.97003 * 119.99417 * 179.97438 * 16 15 13 38 38 H 1.08007 * 120.03713 * 359.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4427 0.0006 5 6 4.0353 2.8141 0.0013 6 6 5.5418 2.7740 0.0012 7 6 6.2285 2.7562 -1.2043 8 6 7.6057 2.7190 -1.2208 9 6 8.3102 2.6988 -0.0167 10 6 9.7350 2.6595 0.3288 11 6 9.8150 2.6502 1.6694 12 7 8.5578 2.6892 2.2125 13 6 8.2789 2.6952 3.5559 14 1 7.3052 2.3867 3.9066 15 6 9.2486 3.0979 4.4646 16 7 10.3523 3.6696 4.0375 17 14 8.9842 2.8272 6.2939 18 1 7.6711 2.1689 6.5122 19 1 10.0664 1.9614 6.8275 20 1 9.0054 4.1355 6.9960 21 6 7.6132 2.7163 1.2053 22 6 6.2242 2.7548 1.1993 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8899 30 1 3.8708 0.9165 -0.7805 31 1 3.6854 3.3371 0.8912 32 1 3.6861 3.3377 -0.8887 33 1 5.6805 2.7715 -2.1347 34 1 8.1371 2.7057 -2.1609 35 1 10.5632 2.6378 -0.3640 36 1 10.7343 2.6195 2.2353 37 1 11.0296 3.9512 4.6724 38 1 5.6797 2.7688 2.1320 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229733049.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:24 Heat of formation + Delta-G solvation = 42.369199 kcal Electronic energy + Delta-G solvation = -18291.759504 eV Core-core repulsion = 15519.690761 eV Total energy + Delta-G solvation = -2772.068743 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.97555 -37.33454 -35.78149 -33.46912 -32.51470 -30.87059 -28.71962 -28.53658 -25.57508 -24.81196 -23.17800 -21.53921 -21.29397 -19.84534 -19.56436 -17.44994 -16.04820 -15.62316 -15.11054 -14.93781 -14.60781 -14.49215 -13.72813 -13.60368 -13.29240 -13.04766 -12.86457 -12.40875 -12.10680 -11.95861 -11.76310 -11.54642 -11.32030 -11.23704 -10.91227 -10.83807 -10.76930 -10.62555 -10.52181 -10.24367 -9.76315 -9.18881 -8.51403 -8.22257 -7.06547 -6.84064 -6.52098 -4.26917 2.21324 2.61257 3.00307 3.04963 3.10677 3.82732 4.06412 4.40140 4.81429 4.84431 4.90732 5.00142 5.11633 5.30310 5.42178 5.55819 5.59167 5.66392 5.71106 5.85454 5.89607 5.97742 6.03441 6.11684 6.20203 6.43221 6.48395 6.54709 6.93630 7.06140 7.11199 7.16303 7.22355 7.24166 7.49347 7.60573 7.62051 7.69663 8.04410 8.21407 8.49281 9.03389 9.46350 10.30375 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.019126 B = 0.004999 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.609585 B = 5599.509636 C = 6832.357525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.057 3.943 4 N -0.686 5.686 5 C 0.114 3.886 6 C -0.111 4.111 7 C -0.163 4.163 8 C -0.085 4.085 9 C -0.116 4.116 10 C -0.286 4.286 11 C 0.086 3.914 12 N -0.291 5.291 13 C -0.338 4.338 14 H 0.106 0.894 15 C 0.041 3.959 16 N -0.854 5.854 17 Si 0.939 3.061 18 H -0.264 1.264 19 H -0.274 1.274 20 H -0.275 1.275 21 C 0.051 3.949 22 C -0.078 4.078 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.024 0.976 30 H 0.341 0.659 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.123 0.877 36 H 0.170 0.830 37 H 0.278 0.722 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.931 -3.400 -5.455 12.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.072 4.072 4 N -0.317 5.317 5 C -0.014 4.014 6 C -0.113 4.113 7 C -0.184 4.184 8 C -0.104 4.104 9 C -0.122 4.122 10 C -0.310 4.310 11 C -0.049 4.049 12 N 0.046 4.954 13 C -0.466 4.466 14 H 0.123 0.877 15 C -0.167 4.167 16 N -0.486 5.486 17 Si 0.763 3.237 18 H -0.188 1.188 19 H -0.199 1.199 20 H -0.201 1.201 21 C -0.060 4.060 22 C -0.099 4.099 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.159 0.841 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.141 0.859 36 H 0.187 0.813 37 H 0.089 0.911 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.749 -3.358 -4.276 12.046 hybrid contribution -0.097 0.322 -0.029 0.338 sum -10.846 -3.036 -4.305 12.058 Atomic orbital electron populations 1.21731 0.95843 1.01559 1.01667 1.21509 0.95257 0.96723 1.02657 1.22001 0.88404 0.96653 1.00143 1.60520 1.06187 1.14607 1.50356 1.20683 0.91889 0.88854 0.99987 1.18910 0.93053 1.06741 0.92632 1.20296 0.93718 1.08446 0.95891 1.20181 0.93153 1.01440 0.95611 1.19047 0.93526 1.07551 0.92057 1.21287 0.93414 1.21893 0.94430 1.22086 0.89409 1.01104 0.92284 1.40229 1.03471 1.47531 1.04141 1.19896 1.01948 1.45374 0.79345 0.87659 1.25492 0.95364 0.94067 1.01743 1.69906 1.08215 1.34182 1.36304 0.85673 0.79179 0.78550 0.80256 1.18766 1.19903 1.20091 1.18349 0.90935 1.08509 0.88245 1.19657 0.90561 1.02735 0.96937 0.93000 0.92702 0.92681 0.92249 0.91040 0.91271 0.95812 0.84111 0.91074 0.95304 0.88276 0.87886 0.85934 0.81316 0.91129 0.87616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.12 -1.26 6.19 -26.73 -0.17 -1.42 16 3 C 0.06 0.66 5.69 -3.82 -0.02 0.64 16 4 N -0.69 -9.83 6.49 -115.06 -0.75 -10.57 16 5 C 0.11 1.77 5.79 -4.98 -0.03 1.74 16 6 C -0.11 -2.13 5.39 -104.56 -0.56 -2.69 16 7 C -0.16 -3.05 9.67 -39.56 -0.38 -3.44 16 8 C -0.09 -1.75 10.10 -39.27 -0.40 -2.15 16 9 C -0.12 -2.77 6.37 -105.09 -0.67 -3.44 16 10 C -0.29 -6.85 11.09 -37.57 -0.42 -7.26 16 11 C 0.09 2.23 9.89 -16.63 -0.16 2.06 16 12 N -0.29 -7.83 2.92 -59.74 -0.17 -8.00 16 13 C -0.34 -9.00 9.93 -14.92 -0.15 -9.15 16 14 H 0.11 2.70 7.85 -52.49 -0.41 2.29 16 15 C 0.04 1.04 5.35 -17.49 -0.09 0.95 16 16 N -0.85 -22.25 10.85 55.49 0.60 -21.65 16 17 Si 0.94 19.25 29.56 -169.99 -5.03 14.23 16 18 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 20 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 21 C 0.05 1.29 6.75 -83.85 -0.57 0.72 16 22 C -0.08 -1.75 9.58 -39.44 -0.38 -2.13 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.34 4.71 8.72 -39.29 -0.34 4.37 16 31 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 32 H 0.03 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.12 2.57 8.06 -52.49 -0.42 2.15 16 36 H 0.17 4.37 6.35 -52.49 -0.33 4.03 16 37 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 38 H 0.11 2.32 8.06 -52.48 -0.42 1.89 16 LS Contribution 319.46 15.07 4.81 4.81 Total: -1.00 -27.91 319.46 -9.87 -37.78 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -5.71 Total: 9.84 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: -3.63 Total: -26.45 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: -0.32 Total: -40.22 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.91 -9.87 -37.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229733049.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.154 kcal (2) G-P(sol) polarization free energy of solvation -27.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds