Wall clock time and date at job start Mon Mar 30 2020 07:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46597 * 2 1 4 4 N 1.46902 * 109.47108 * 179.97438 * 3 2 1 5 5 C 1.46895 * 111.00198 * 180.02562 * 4 3 2 6 6 C 1.50705 * 109.47330 * 180.02562 * 5 4 3 7 7 C 1.38751 * 119.67671 * 89.99522 * 6 5 4 8 8 C 1.37777 * 120.36419 * 180.02562 * 7 6 5 9 9 C 1.39521 * 119.65305 * 0.02562 * 8 7 6 10 10 C 1.46665 * 133.96518 * 179.97438 * 9 8 7 11 11 C 1.34303 * 107.05010 * 180.26597 * 10 9 8 12 12 N 1.37008 * 109.92675 * 359.60591 * 11 10 9 13 13 C 1.37206 * 125.08697 * 180.17161 * 12 11 10 14 14 H 1.07994 * 119.99948 * 201.23547 * 13 12 11 15 15 C 1.38858 * 119.99997 * 21.22641 * 13 12 11 16 16 N 1.31437 * 119.99828 * 10.71540 * 15 13 12 17 17 Si 1.86804 * 119.99848 * 190.70625 * 15 13 12 18 18 H 1.48499 * 109.47156 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46727 * 120.00720 * 17 15 13 20 20 H 1.48501 * 109.47119 * 240.00643 * 17 15 13 21 21 C 1.38108 * 109.82078 * 0.40824 * 12 11 10 22 22 C 1.37896 * 119.67596 * 270.02627 * 6 5 4 23 23 H 1.09003 * 109.47227 * 60.00140 * 1 2 3 24 24 H 1.09004 * 109.46668 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47482 * 299.99619 * 1 2 3 26 26 H 1.08997 * 109.47052 * 240.00635 * 2 1 3 27 27 H 1.08994 * 109.47025 * 120.00025 * 2 1 3 28 28 H 1.09003 * 109.47332 * 60.00425 * 3 2 1 29 29 H 1.08994 * 109.47453 * 299.99762 * 3 2 1 30 30 H 1.00898 * 110.99825 * 56.04737 * 4 3 2 31 31 H 1.08996 * 109.47165 * 60.00146 * 5 4 3 32 32 H 1.09003 * 109.47349 * 299.99955 * 5 4 3 33 33 H 1.07996 * 119.81556 * 0.02562 * 7 6 5 34 34 H 1.08002 * 120.17461 * 180.02562 * 8 7 6 35 35 H 1.08000 * 126.47293 * 0.02562 * 10 9 8 36 36 H 1.07993 * 125.03088 * 179.76756 * 11 10 9 37 37 H 0.97003 * 119.99417 * 179.97438 * 16 15 13 38 38 H 1.08007 * 120.03713 * 359.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4427 0.0006 5 6 4.0353 2.8141 0.0013 6 6 5.5418 2.7740 0.0012 7 6 6.2285 2.7562 -1.2043 8 6 7.6057 2.7190 -1.2208 9 6 8.3102 2.6988 -0.0167 10 6 9.7350 2.6595 0.3288 11 6 9.8150 2.6502 1.6694 12 7 8.5578 2.6892 2.2125 13 6 8.2789 2.6952 3.5559 14 1 7.3052 2.3867 3.9066 15 6 9.2486 3.0979 4.4646 16 7 10.3523 3.6696 4.0375 17 14 8.9842 2.8272 6.2939 18 1 7.6711 2.1689 6.5122 19 1 10.0664 1.9614 6.8275 20 1 9.0054 4.1355 6.9960 21 6 7.6132 2.7163 1.2053 22 6 6.2242 2.7548 1.1993 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8899 30 1 3.8708 0.9165 -0.7805 31 1 3.6854 3.3371 0.8912 32 1 3.6861 3.3377 -0.8887 33 1 5.6805 2.7715 -2.1347 34 1 8.1371 2.7057 -2.1609 35 1 10.5632 2.6378 -0.3640 36 1 10.7343 2.6195 2.2353 37 1 11.0296 3.9512 4.6724 38 1 5.6797 2.7688 2.1320 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229733049.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:23 Heat of formation + Delta-G solvation = 27.816990 kcal Electronic energy + Delta-G solvation = -18292.390535 eV Core-core repulsion = 15519.690761 eV Total energy + Delta-G solvation = -2772.699774 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.77114 -38.72803 -37.08409 -35.15411 -33.76553 -32.56331 -30.44847 -30.04938 -26.85783 -26.62015 -24.39984 -23.15030 -22.24479 -21.67335 -21.21719 -19.27874 -17.52311 -17.14952 -16.77666 -16.23831 -15.95052 -15.74550 -15.18251 -15.01258 -14.96302 -14.52594 -14.27444 -13.80385 -13.57725 -13.30961 -13.06957 -12.92838 -12.76481 -12.65870 -12.47830 -12.25471 -12.16184 -12.03994 -11.74780 -11.58258 -11.39382 -11.02797 -10.28954 -9.31273 -8.85132 -8.70658 -8.35008 -6.24736 0.50089 0.95741 1.34430 1.38117 1.51093 2.09872 2.21815 2.91572 3.03776 3.17785 3.55066 4.01797 4.13782 4.16586 4.22447 4.37256 4.40429 4.52512 4.67962 4.72663 4.74235 4.80588 4.84042 4.85361 4.94086 5.07244 5.21670 5.28784 5.33855 5.37846 5.38263 5.43152 5.45053 5.76560 5.87820 5.92334 6.13881 6.33671 6.45650 6.52738 6.57014 7.14390 7.55909 8.42508 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.019126 B = 0.004999 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.609585 B = 5599.509636 C = 6832.357525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.059 3.941 4 N -0.700 5.700 5 C 0.119 3.881 6 C -0.091 4.091 7 C -0.152 4.152 8 C -0.086 4.086 9 C -0.141 4.141 10 C -0.285 4.285 11 C 0.056 3.944 12 N -0.315 5.315 13 C -0.373 4.373 14 H 0.101 0.899 15 C 0.000 4.000 16 N -0.884 5.884 17 Si 1.011 2.989 18 H -0.260 1.260 19 H -0.265 1.265 20 H -0.268 1.268 21 C 0.019 3.981 22 C -0.109 4.109 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.039 0.961 30 H 0.345 0.655 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.143 0.857 34 H 0.134 0.866 35 H 0.148 0.852 36 H 0.158 0.842 37 H 0.284 0.716 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.948 -3.604 -6.914 15.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.069 4.069 4 N -0.332 5.332 5 C -0.009 4.009 6 C -0.093 4.093 7 C -0.172 4.172 8 C -0.105 4.105 9 C -0.147 4.147 10 C -0.310 4.310 11 C -0.078 4.078 12 N 0.021 4.979 13 C -0.500 4.500 14 H 0.118 0.882 15 C -0.204 4.204 16 N -0.517 5.517 17 Si 0.832 3.168 18 H -0.183 1.183 19 H -0.189 1.189 20 H -0.193 1.193 21 C -0.091 4.091 22 C -0.130 4.130 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.163 0.837 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.161 0.839 34 H 0.152 0.848 35 H 0.166 0.834 36 H 0.175 0.825 37 H 0.094 0.906 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.777 -3.565 -5.761 14.463 hybrid contribution 0.407 0.383 0.245 0.610 sum -12.370 -3.183 -5.516 13.914 Atomic orbital electron populations 1.21703 0.94333 1.02284 1.02127 1.21481 0.96519 0.95677 1.02184 1.22044 0.86563 0.97692 1.00635 1.60443 1.08036 1.13777 1.50933 1.20635 0.89175 0.90009 1.01121 1.19388 0.95212 1.03003 0.91673 1.20784 0.93280 1.05864 0.97279 1.20600 0.94120 1.00221 0.95519 1.19429 0.93473 1.08764 0.93052 1.21621 0.94595 1.20700 0.94062 1.22111 0.89221 1.03300 0.93206 1.40421 1.04041 1.48963 1.04516 1.20160 1.02539 1.47091 0.80219 0.88171 1.26485 0.94688 0.93069 1.06163 1.69997 1.08990 1.34712 1.37993 0.84626 0.79308 0.78694 0.74200 1.18342 1.18943 1.19320 1.18941 0.92097 1.09364 0.88697 1.19830 0.89771 1.05239 0.98154 0.92108 0.91905 0.92649 0.91762 0.92508 0.91650 0.94296 0.83663 0.91376 0.92742 0.83922 0.84796 0.83443 0.82476 0.90585 0.88525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 71.98 0.71 -1.38 16 2 C -0.12 -2.19 6.19 30.59 0.19 -2.00 16 3 C 0.06 1.22 5.69 86.30 0.49 1.71 16 4 N -0.70 -18.37 6.49 -517.94 -3.36 -21.74 16 5 C 0.12 3.37 5.79 85.56 0.50 3.87 16 6 C -0.09 -3.30 5.39 -19.82 -0.11 -3.41 16 7 C -0.15 -5.17 9.67 22.28 0.22 -4.95 16 8 C -0.09 -3.33 10.10 22.47 0.23 -3.10 16 9 C -0.14 -6.78 6.37 -20.17 -0.13 -6.91 16 10 C -0.29 -13.93 11.09 23.57 0.26 -13.67 16 11 C 0.06 3.03 9.89 82.99 0.82 3.85 16 12 N -0.32 -17.81 2.92 -342.91 -1.00 -18.81 16 13 C -0.37 -20.89 9.93 84.00 0.83 -20.05 16 14 H 0.10 5.45 7.85 -2.91 -0.02 5.43 16 15 C 0.00 0.02 5.35 84.90 0.45 0.48 16 16 N -0.88 -47.83 10.85 21.65 0.23 -47.60 16 17 Si 1.01 40.28 29.56 68.60 2.03 42.31 16 18 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 19 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 20 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 21 C 0.02 1.01 6.75 38.93 0.26 1.28 16 22 C -0.11 -4.96 9.58 22.36 0.21 -4.75 16 23 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.34 8.52 8.72 -89.70 -0.78 7.73 16 31 H 0.07 1.99 8.08 -2.39 -0.02 1.97 16 32 H 0.05 1.30 8.08 -2.39 -0.02 1.28 16 33 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 34 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 35 H 0.15 6.17 8.06 -2.91 -0.02 6.15 16 36 H 0.16 8.66 6.35 -2.91 -0.02 8.64 16 37 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 38 H 0.10 4.44 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -62.88 319.46 3.10 -59.78 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: 0.26 Total: 35.10 kcal Atomic # 6 Polarization: -53.99 SS G_CDS: 4.94 Total: -49.04 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -4.13 Total: -88.14 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Total: -62.88 3.10 -59.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229733049.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.592 kcal (2) G-P(sol) polarization free energy of solvation -62.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds