Wall clock time and date at job start Mon Mar 30 2020 06:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 7 12 12 C 1.36823 * 125.06584 * 264.69775 * 11 10 9 13 13 C 1.34233 * 109.93461 * 179.87594 * 12 11 10 14 14 C 1.46493 * 106.99456 * 0.37353 * 13 12 11 15 15 C 1.39629 * 134.03250 * 179.79727 * 14 13 12 16 16 C 1.36622 * 119.76582 * 179.97438 * 15 14 13 17 17 C 1.38831 * 120.52651 * 0.02562 * 16 15 14 18 18 C 1.37747 * 120.66872 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.11207 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.47385 * 264.97762 * 19 18 17 21 21 N 1.46900 * 109.47234 * 179.97438 * 20 19 18 22 22 C 1.37687 * 125.06042 * 84.99854 * 11 10 9 23 23 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 27 27 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 28 28 H 1.08010 * 125.03407 * 359.97438 * 12 11 10 29 29 H 1.08001 * 126.50559 * 180.15185 * 13 12 11 30 30 H 1.08005 * 120.11762 * 359.95245 * 15 14 13 31 31 H 1.07995 * 119.73633 * 179.97438 * 16 15 14 32 32 H 1.08000 * 119.66545 * 179.97438 * 17 16 15 33 33 H 1.08997 * 109.46735 * 24.98464 * 19 18 17 34 34 H 1.09000 * 109.47016 * 144.97978 * 19 18 17 35 35 H 1.08994 * 109.47052 * 300.00268 * 20 19 18 36 36 H 1.09000 * 109.46867 * 60.00125 * 20 19 18 37 37 H 1.00897 * 110.99682 * 56.04588 * 21 20 19 38 38 H 1.00896 * 110.99875 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 1.2096 -5.6630 1.1166 13 6 0.5312 -6.7678 0.7685 14 6 0.3959 -6.7454 -0.6900 15 6 -0.1928 -7.6010 -1.6233 16 6 -0.1482 -7.2886 -2.9526 17 6 0.4786 -6.1271 -3.3834 18 6 1.0667 -5.2696 -2.4799 19 6 1.7442 -4.0125 -2.9614 20 6 3.2420 -4.2735 -3.1319 21 7 3.9023 -3.0483 -3.6018 22 6 1.0317 -5.5670 -1.1212 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 0.8903 25 1 0.6246 -2.5571 -0.8897 26 1 2.8718 -3.6044 -0.8895 27 1 2.8718 -3.6044 0.8904 28 1 1.4753 -5.3915 2.1276 29 1 0.1591 -7.5305 1.4365 30 1 -0.6815 -8.5067 -1.2956 31 1 -0.6033 -7.9509 -3.6741 32 1 0.5061 -5.8940 -4.4375 33 1 1.3163 -3.7128 -3.9180 34 1 1.5948 -3.2169 -2.2314 35 1 3.6698 -4.5732 -2.1752 36 1 3.3913 -5.0691 -3.8618 37 1 3.7243 -2.2784 -2.9745 38 1 4.8932 -3.1951 -3.7227 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229736291.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:18 Heat of formation + Delta-G solvation = 45.458512 kcal Electronic energy + Delta-G solvation = -19271.511463 eV Core-core repulsion = 16499.576683 eV Total energy + Delta-G solvation = -2771.934780 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.99029 -36.96695 -35.70375 -33.74208 -32.34521 -31.02776 -28.85775 -28.46942 -26.93414 -24.63519 -22.56615 -21.81165 -21.17554 -20.97803 -19.02379 -16.87098 -16.16027 -15.91115 -15.37873 -15.25479 -14.73815 -14.67275 -14.19108 -13.87118 -13.42871 -12.87927 -12.63933 -12.49227 -12.32264 -12.11663 -11.85845 -11.51548 -11.30539 -11.06524 -11.01293 -10.65943 -10.53885 -10.36241 -10.12514 -9.85575 -9.40927 -8.98733 -8.52769 -8.45221 -7.72903 -7.09725 -6.16577 -4.23419 1.51522 2.07303 3.15424 3.23231 3.28969 3.29564 3.45506 4.27572 4.32572 4.77194 5.12909 5.19279 5.24331 5.25356 5.39368 5.44264 5.52045 5.61986 5.76925 5.88603 5.90444 6.05924 6.11468 6.13429 6.24302 6.41293 6.44396 6.47371 6.63681 6.94885 6.98294 7.17354 7.24895 7.34941 7.43714 7.45116 7.67087 7.71842 7.77070 7.89643 8.14575 8.82011 9.42531 10.93974 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.020806 B = 0.006560 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.437560 B = 4267.082530 C = 4938.085344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.895 3.105 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.531 4.531 8 H 0.056 0.944 9 C 0.012 3.988 10 C 0.096 3.904 11 N -0.467 5.467 12 C 0.060 3.940 13 C -0.226 4.226 14 C -0.113 4.113 15 C -0.083 4.083 16 C -0.151 4.151 17 C -0.111 4.111 18 C -0.075 4.075 19 C -0.100 4.100 20 C 0.072 3.928 21 N -0.853 5.853 22 C 0.106 3.894 23 H 0.264 0.736 24 H 0.022 0.978 25 H 0.028 0.972 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.162 0.838 29 H 0.139 0.861 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.023 0.977 36 H 0.066 0.934 37 H 0.351 0.649 38 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.755 -11.616 -2.906 12.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.138 4.138 3 Si 0.722 3.278 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.570 4.570 8 H 0.075 0.925 9 C -0.026 4.026 10 C -0.024 4.024 11 N -0.146 5.146 12 C -0.067 4.067 13 C -0.251 4.251 14 C -0.118 4.118 15 C -0.101 4.101 16 C -0.170 4.170 17 C -0.130 4.130 18 C -0.078 4.078 19 C -0.138 4.138 20 C -0.059 4.059 21 N -0.383 5.383 22 C -0.002 4.002 23 H 0.074 0.926 24 H 0.040 0.960 25 H 0.046 0.954 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.180 0.820 29 H 0.157 0.843 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.137 0.863 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.164 0.836 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.322 -11.235 -3.511 12.231 hybrid contribution 0.860 0.929 1.062 1.653 sum 4.182 -10.306 -2.449 11.389 Atomic orbital electron populations 1.69956 1.06144 1.27162 1.49110 1.24981 0.94819 0.99342 0.94697 0.86611 0.79593 0.82842 0.78717 1.19936 1.21150 1.20211 1.20913 0.92804 0.90326 1.52941 0.92533 1.19505 0.94099 0.90546 0.98421 1.22516 0.95906 0.81318 1.02613 1.44455 1.46418 1.19626 1.04130 1.21818 1.00655 0.92651 0.91609 1.21497 1.09731 1.01007 0.92874 1.19194 1.03147 0.95814 0.93614 1.20125 0.99377 0.98440 0.92206 1.20474 1.03046 0.98112 0.95370 1.20630 0.99397 0.94555 0.98416 1.18841 1.01859 0.97545 0.89584 1.20884 0.93726 0.95812 1.03337 1.21743 0.94104 0.92388 0.97616 1.58722 1.15726 1.07453 1.56369 1.18114 1.00172 0.93712 0.88204 0.92595 0.95998 0.95403 0.90100 0.90701 0.82042 0.84283 0.86826 0.86725 0.86307 0.90507 0.88171 0.95911 0.91559 0.83561 0.85300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 13.29 55.43 0.74 -24.92 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.53 -13.82 9.11 -34.44 -0.31 -14.13 16 8 H 0.06 1.39 7.74 -52.49 -0.41 0.98 16 9 C 0.01 0.29 4.71 -27.88 -0.13 0.15 16 10 C 0.10 1.89 5.17 -4.04 -0.02 1.87 16 11 N -0.47 -8.78 2.78 -114.43 -0.32 -9.09 16 12 C 0.06 1.01 11.27 -16.74 -0.19 0.82 16 13 C -0.23 -3.63 11.08 -37.67 -0.42 -4.05 16 14 C -0.11 -1.99 6.37 -105.14 -0.67 -2.66 16 15 C -0.08 -1.27 10.05 -39.65 -0.40 -1.67 16 16 C -0.15 -2.19 9.97 -39.95 -0.40 -2.59 16 17 C -0.11 -1.72 9.65 -39.54 -0.38 -2.10 16 18 C -0.08 -1.34 5.15 -104.47 -0.54 -1.87 16 19 C -0.10 -1.75 4.89 -27.88 -0.14 -1.88 16 20 C 0.07 1.10 6.09 -3.82 -0.02 1.08 16 21 N -0.85 -12.44 9.62 -10.37 -0.10 -12.54 16 22 C 0.11 2.00 6.74 -83.99 -0.57 1.43 16 23 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.03 0.75 6.56 -51.93 -0.34 0.41 16 26 H 0.08 1.52 4.05 -51.93 -0.21 1.31 16 27 H 0.07 1.37 8.11 -51.93 -0.42 0.95 16 28 H 0.16 2.22 8.06 -52.48 -0.42 1.80 16 29 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 31 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 32 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.08 1.31 8.05 -51.93 -0.42 0.89 16 34 H 0.10 2.04 3.92 -51.93 -0.20 1.84 16 35 H 0.02 0.36 6.62 -51.93 -0.34 0.02 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.35 5.52 8.99 -39.29 -0.35 5.17 16 38 H 0.34 4.05 9.08 -39.29 -0.36 3.70 16 LS Contribution 310.30 15.07 4.68 4.68 Total: -1.00 -29.41 310.30 -9.46 -38.87 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -5.15 Total: 11.40 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -4.28 Total: -23.95 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.32 Total: -46.55 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.41 -9.46 -38.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229736291.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.328 kcal (2) G-P(sol) polarization free energy of solvation -29.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds