Wall clock time and date at job start Mon Mar 30 2020 06:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 7 12 12 C 1.36823 * 125.06584 * 264.69775 * 11 10 9 13 13 C 1.34233 * 109.93461 * 179.87594 * 12 11 10 14 14 C 1.46493 * 106.99456 * 0.37353 * 13 12 11 15 15 C 1.39629 * 134.03250 * 179.79727 * 14 13 12 16 16 C 1.36622 * 119.76582 * 179.97438 * 15 14 13 17 17 C 1.38831 * 120.52651 * 0.02562 * 16 15 14 18 18 C 1.37747 * 120.66872 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.11207 * 179.97438 * 18 17 16 20 20 C 1.52998 * 109.47385 * 264.97762 * 19 18 17 21 21 N 1.46900 * 109.47234 * 179.97438 * 20 19 18 22 22 C 1.37687 * 125.06042 * 84.99854 * 11 10 9 23 23 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 27 27 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 28 28 H 1.08010 * 125.03407 * 359.97438 * 12 11 10 29 29 H 1.08001 * 126.50559 * 180.15185 * 13 12 11 30 30 H 1.08005 * 120.11762 * 359.95245 * 15 14 13 31 31 H 1.07995 * 119.73633 * 179.97438 * 16 15 14 32 32 H 1.08000 * 119.66545 * 179.97438 * 17 16 15 33 33 H 1.08997 * 109.46735 * 24.98464 * 19 18 17 34 34 H 1.09000 * 109.47016 * 144.97978 * 19 18 17 35 35 H 1.08994 * 109.47052 * 300.00268 * 20 19 18 36 36 H 1.09000 * 109.46867 * 60.00125 * 20 19 18 37 37 H 1.00897 * 110.99682 * 56.04588 * 21 20 19 38 38 H 1.00896 * 110.99875 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 1.2096 -5.6630 1.1166 13 6 0.5312 -6.7678 0.7685 14 6 0.3959 -6.7454 -0.6900 15 6 -0.1928 -7.6010 -1.6233 16 6 -0.1482 -7.2886 -2.9526 17 6 0.4786 -6.1271 -3.3834 18 6 1.0667 -5.2696 -2.4799 19 6 1.7442 -4.0125 -2.9614 20 6 3.2420 -4.2735 -3.1319 21 7 3.9023 -3.0483 -3.6018 22 6 1.0317 -5.5670 -1.1212 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 0.8903 25 1 0.6246 -2.5571 -0.8897 26 1 2.8718 -3.6044 -0.8895 27 1 2.8718 -3.6044 0.8904 28 1 1.4753 -5.3915 2.1276 29 1 0.1591 -7.5305 1.4365 30 1 -0.6815 -8.5067 -1.2956 31 1 -0.6033 -7.9509 -3.6741 32 1 0.5061 -5.8940 -4.4375 33 1 1.3163 -3.7128 -3.9180 34 1 1.5948 -3.2169 -2.2314 35 1 3.6698 -4.5732 -2.1752 36 1 3.3913 -5.0691 -3.8618 37 1 3.7243 -2.2784 -2.9745 38 1 4.8932 -3.1951 -3.7227 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229736291.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:13 Heat of formation + Delta-G solvation = 28.476243 kcal Electronic energy + Delta-G solvation = -19272.247870 eV Core-core repulsion = 16499.576683 eV Total energy + Delta-G solvation = -2772.671186 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -42.28844 -38.23192 -37.07526 -35.49643 -33.91377 -32.48865 -30.39539 -29.74903 -28.32800 -26.38825 -23.84445 -23.45015 -22.49609 -22.34281 -20.36038 -18.73165 -17.53680 -17.35582 -16.71931 -16.58129 -16.46461 -15.92700 -15.61616 -15.21278 -14.87473 -14.32857 -14.24049 -13.89133 -13.80375 -13.37431 -13.34023 -13.02005 -12.82893 -12.66383 -12.55426 -12.24492 -11.98998 -11.84242 -11.64988 -11.54777 -11.39341 -10.60641 -10.31332 -9.66145 -9.01705 -8.41066 -8.23104 -6.38435 0.27044 0.81744 1.40776 1.43108 1.50633 1.87022 2.08866 2.40209 3.03096 3.10131 3.55463 3.87736 3.94613 3.97926 4.05444 4.21716 4.30114 4.35751 4.39600 4.56867 4.59104 4.66378 4.73750 4.85148 4.90690 5.03132 5.15275 5.18376 5.25353 5.39909 5.44483 5.70528 5.72959 5.75660 5.95971 6.04752 6.06716 6.14666 6.45140 6.51721 6.56564 6.77433 7.32526 8.86923 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.020806 B = 0.006560 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.437560 B = 4267.082530 C = 4938.085344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.538 4.538 8 H 0.071 0.929 9 C 0.027 3.973 10 C 0.113 3.887 11 N -0.481 5.481 12 C 0.039 3.961 13 C -0.220 4.220 14 C -0.136 4.136 15 C -0.086 4.086 16 C -0.148 4.148 17 C -0.110 4.110 18 C -0.102 4.102 19 C -0.092 4.092 20 C 0.082 3.918 21 N -0.854 5.854 22 C 0.075 3.925 23 H 0.264 0.736 24 H -0.014 1.014 25 H -0.005 1.005 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.184 0.816 29 H 0.169 0.831 30 H 0.143 0.857 31 H 0.150 0.850 32 H 0.139 0.861 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.016 0.984 36 H 0.079 0.921 37 H 0.343 0.657 38 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.705 -12.859 -3.458 14.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.186 1.186 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.576 4.576 8 H 0.089 0.911 9 C -0.010 4.010 10 C -0.007 4.007 11 N -0.162 5.162 12 C -0.087 4.087 13 C -0.245 4.245 14 C -0.141 4.141 15 C -0.104 4.104 16 C -0.167 4.167 17 C -0.130 4.130 18 C -0.105 4.105 19 C -0.130 4.130 20 C -0.048 4.048 21 N -0.385 5.385 22 C -0.032 4.032 23 H 0.072 0.928 24 H 0.004 0.996 25 H 0.013 0.987 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.201 0.799 29 H 0.187 0.813 30 H 0.161 0.839 31 H 0.168 0.832 32 H 0.157 0.843 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.034 0.966 36 H 0.098 0.902 37 H 0.156 0.844 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.295 -12.512 -4.064 13.839 hybrid contribution 0.490 1.213 1.179 1.761 sum 4.785 -11.299 -2.885 12.605 Atomic orbital electron populations 1.70115 1.08082 1.27971 1.50851 1.25931 0.95551 1.03360 0.94315 0.85496 0.78227 0.77904 0.79431 1.18619 1.21471 1.19037 1.21355 0.93635 0.91012 1.51644 0.91081 1.19249 0.94181 0.92608 0.95001 1.22137 0.94616 0.80485 1.03509 1.44411 1.47352 1.19435 1.05019 1.22340 1.01232 0.92958 0.92137 1.21902 1.08633 1.01197 0.92763 1.19655 1.03656 0.96003 0.94798 1.20535 0.98661 0.98957 0.92242 1.20898 1.01965 0.97891 0.95896 1.20984 0.98315 0.94485 0.99167 1.19046 1.03318 0.98238 0.89850 1.20742 0.95339 0.94991 1.01928 1.21623 0.92679 0.92878 0.97645 1.58711 1.16979 1.06886 1.55895 1.18528 1.01265 0.94716 0.88722 0.92760 0.99579 0.98729 0.89378 0.89439 0.79870 0.81346 0.83926 0.83192 0.84274 0.90742 0.91625 0.96597 0.90216 0.84407 0.83577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.74 13.29 21.45 0.28 -55.45 16 2 C 0.01 0.40 5.46 84.66 0.46 0.86 16 3 Si 0.97 42.38 29.54 68.60 2.03 44.41 16 4 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 7 C -0.54 -28.54 9.11 25.60 0.23 -28.31 16 8 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.03 1.39 4.71 29.85 0.14 1.53 16 10 C 0.11 4.56 5.17 86.38 0.45 5.00 16 11 N -0.48 -18.42 2.78 -515.94 -1.43 -19.85 16 12 C 0.04 1.30 11.27 83.00 0.94 2.24 16 13 C -0.22 -6.81 11.08 23.51 0.26 -6.55 16 14 C -0.14 -4.66 6.37 -20.20 -0.13 -4.79 16 15 C -0.09 -2.42 10.05 22.23 0.22 -2.19 16 16 C -0.15 -3.87 9.97 22.03 0.22 -3.65 16 17 C -0.11 -3.27 9.65 22.30 0.22 -3.05 16 18 C -0.10 -3.60 5.15 -19.77 -0.10 -3.71 16 19 C -0.09 -3.29 4.89 29.85 0.15 -3.14 16 20 C 0.08 2.49 6.09 86.30 0.53 3.02 16 21 N -0.85 -24.35 9.62 -186.73 -1.80 -26.15 16 22 C 0.07 2.84 6.74 39.03 0.26 3.10 16 23 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 24 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 25 H -0.01 -0.32 6.56 -2.39 -0.02 -0.33 16 26 H 0.09 3.39 4.05 -2.39 -0.01 3.38 16 27 H 0.09 3.23 8.11 -2.39 -0.02 3.21 16 28 H 0.18 4.94 8.06 -2.91 -0.02 4.92 16 29 H 0.17 4.02 8.06 -2.91 -0.02 3.99 16 30 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 31 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 32 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 33 H 0.07 2.58 8.05 -2.39 -0.02 2.57 16 34 H 0.07 2.81 3.92 -2.39 -0.01 2.80 16 35 H 0.02 0.50 6.62 -2.39 -0.02 0.49 16 36 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.34 10.80 8.99 -89.70 -0.81 9.99 16 38 H 0.35 8.03 9.08 -89.70 -0.81 7.21 16 Total: -1.00 -65.17 310.30 2.38 -62.79 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: -0.54 Total: 33.90 kcal Atomic # 6 Polarization: -43.48 SS G_CDS: 3.84 Total: -39.64 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -2.95 Total: -101.46 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -65.17 2.38 -62.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229736291.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.265 kcal (2) G-P(sol) polarization free energy of solvation -65.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.80 seconds