Wall clock time and date at job start Mon Mar 30 2020 07:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47073 * 2 1 4 4 H 1.09003 * 109.47091 * 304.99615 * 3 2 1 5 5 N 1.46898 * 109.47439 * 64.99663 * 3 2 1 6 6 C 1.52999 * 109.47158 * 185.00169 * 3 2 1 7 7 C 1.50701 * 109.47586 * 175.65324 * 6 3 2 8 8 C 1.37939 * 120.04078 * 94.75750 * 7 6 3 9 9 C 1.38707 * 120.64436 * 180.02562 * 8 7 6 10 10 C 1.37824 * 120.36536 * 359.97438 * 9 8 7 11 11 C 1.39478 * 119.65331 * 359.97438 * 10 9 8 12 12 C 1.46668 * 133.97133 * 179.97438 * 11 10 9 13 13 C 1.34303 * 107.04833 * 180.02562 * 12 11 10 14 14 N 1.36996 * 109.94210 * 359.97438 * 13 12 11 15 15 C 1.37210 * 125.09155 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00008 * 205.68315 * 15 14 13 17 17 C 1.38853 * 119.99716 * 25.68518 * 15 14 13 18 18 N 1.31434 * 120.00316 * 11.03581 * 17 15 14 19 19 Si 1.86802 * 119.99531 * 191.03838 * 17 15 14 20 20 H 1.48496 * 109.47445 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46806 * 120.00146 * 19 17 15 22 22 H 1.48502 * 109.46917 * 239.99916 * 19 17 15 23 23 C 1.38119 * 109.81901 * 0.02562 * 14 13 12 24 24 H 1.08999 * 109.46931 * 60.00546 * 1 2 3 25 25 H 1.09005 * 109.47264 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47150 * 300.00039 * 1 2 3 27 27 H 1.08995 * 109.47100 * 239.99223 * 2 1 3 28 28 H 1.08999 * 109.46931 * 119.99454 * 2 1 3 29 29 H 1.00902 * 110.99926 * 294.67837 * 5 3 2 30 30 H 1.00896 * 110.99994 * 58.63570 * 5 3 2 31 31 H 1.09003 * 109.47662 * 55.64951 * 6 3 2 32 32 H 1.09004 * 109.46995 * 295.64956 * 6 3 2 33 33 H 1.08001 * 119.67759 * 359.97438 * 8 7 6 34 34 H 1.07998 * 119.81255 * 179.70536 * 9 8 7 35 35 H 1.07993 * 120.16952 * 179.97438 * 10 9 8 36 36 H 1.07992 * 126.47674 * 0.07326 * 12 11 10 37 37 H 1.08003 * 125.02436 * 180.02562 * 13 12 11 38 38 H 0.96999 * 120.00372 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 7 1.6514 2.0993 1.2551 6 6 3.5648 1.4443 -0.1258 7 6 4.0584 2.8642 -0.2332 8 6 4.4754 3.5376 0.8961 9 6 4.9315 4.8448 0.8118 10 6 4.9749 5.4904 -0.4051 11 6 4.5575 4.8222 -1.5561 12 6 4.4704 5.1914 -2.9729 13 6 3.9862 4.1241 -3.6288 14 7 3.7559 3.0998 -2.7488 15 6 3.2616 1.8653 -3.0871 16 1 2.7296 1.2772 -2.3540 17 6 3.4455 1.3722 -4.3721 18 7 4.2701 1.9783 -5.1968 19 14 2.5209 -0.1525 -4.9285 20 1 1.6621 -0.6426 -3.8205 21 1 1.6735 0.1828 -6.1010 22 1 3.4924 -1.2103 -5.3061 23 6 4.0957 3.4957 -1.4699 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 0.6484 2.1884 1.3211 30 1 2.0237 1.6053 2.0522 31 1 3.8566 0.8898 -1.0177 32 1 4.0025 0.9732 0.7543 33 1 4.4457 3.0424 1.8555 34 1 5.2503 5.3609 1.7053 35 1 5.3302 6.5083 -0.4671 36 1 4.7446 6.1415 -3.4068 37 1 3.8059 4.0798 -4.6928 38 1 4.3983 1.6341 -6.0946 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229739733.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:33 Heat of formation + Delta-G solvation = 41.324207 kcal Electronic energy + Delta-G solvation = -19626.402567 eV Core-core repulsion = 16854.288510 eV Total energy + Delta-G solvation = -2772.114057 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.02704 -37.13892 -35.80694 -33.15486 -31.84816 -30.40566 -29.14620 -27.54773 -27.20032 -24.62407 -23.26499 -20.84818 -20.41704 -20.05894 -19.43099 -17.25159 -15.91908 -15.51819 -14.83196 -14.58520 -14.54635 -14.23627 -13.93168 -13.47894 -13.16658 -12.89948 -12.64966 -12.07800 -11.84348 -11.77954 -11.42640 -11.30965 -11.28433 -11.15779 -10.86162 -10.59387 -10.51141 -10.48117 -10.32919 -9.93106 -9.60413 -9.13750 -8.30135 -8.20021 -6.90444 -6.79349 -6.42451 -4.22430 2.34044 2.80170 3.03024 3.03828 3.06928 3.83101 4.14474 4.85908 4.91769 4.96790 5.02918 5.21333 5.28217 5.34619 5.72940 5.79410 5.92795 6.00568 6.04168 6.10850 6.17155 6.20770 6.35815 6.43744 6.55160 6.61178 6.65134 6.75292 7.05534 7.18666 7.25710 7.29213 7.29513 7.55301 7.70542 7.75254 7.77661 7.81845 8.16497 8.30783 8.53545 9.09754 9.55521 10.35783 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.013780 B = 0.011275 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.453654 B = 2482.670184 C = 4212.427279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.161 4.161 3 C 0.098 3.902 4 H 0.086 0.914 5 N -0.832 5.832 6 C -0.074 4.074 7 C -0.054 4.054 8 C -0.117 4.117 9 C -0.170 4.170 10 C -0.092 4.092 11 C -0.119 4.119 12 C -0.286 4.286 13 C 0.088 3.912 14 N -0.292 5.292 15 C -0.345 4.345 16 H 0.114 0.886 17 C 0.042 3.958 18 N -0.853 5.853 19 Si 0.926 3.074 20 H -0.263 1.263 21 H -0.274 1.274 22 H -0.276 1.276 23 C 0.063 3.937 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.332 0.668 30 H 0.330 0.670 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.120 0.880 37 H 0.161 0.839 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.389 -2.839 7.267 8.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.201 4.201 3 C -0.013 4.013 4 H 0.104 0.896 5 N -0.360 5.360 6 C -0.111 4.111 7 C -0.056 4.056 8 C -0.137 4.137 9 C -0.190 4.190 10 C -0.111 4.111 11 C -0.125 4.125 12 C -0.311 4.311 13 C -0.047 4.047 14 N 0.045 4.955 15 C -0.472 4.472 16 H 0.131 0.869 17 C -0.166 4.166 18 N -0.485 5.485 19 Si 0.751 3.249 20 H -0.187 1.187 21 H -0.200 1.200 22 H -0.202 1.202 23 C -0.048 4.048 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.145 0.855 30 H 0.143 0.857 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.138 0.862 37 H 0.178 0.822 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.035 -2.580 6.634 8.182 hybrid contribution -0.783 -1.617 -0.292 1.820 sum -4.818 -4.198 6.342 9.003 Atomic orbital electron populations 1.21776 0.96226 1.01255 1.01669 1.22399 0.95937 0.99471 1.02263 1.21495 0.95649 0.91098 0.93081 0.89580 1.58852 1.16103 1.57445 1.03627 1.20675 0.93619 0.94811 1.02013 1.18387 1.02001 0.94905 0.90331 1.20173 1.02939 0.94681 0.95873 1.20449 1.06573 0.95702 0.96243 1.20190 1.01245 0.98132 0.91534 1.19006 1.05671 0.94282 0.93497 1.21229 1.18470 0.99742 0.91642 1.21824 1.00874 0.85729 0.96270 1.40083 1.42698 1.09606 1.03154 1.20064 1.34840 0.94007 0.98314 0.86877 1.25479 0.95337 0.99355 0.96391 1.69926 1.30717 1.40283 1.07585 0.85862 0.79369 0.80289 0.79334 1.18705 1.19987 1.20154 1.18224 1.04784 0.94972 0.86824 0.92397 0.93085 0.93197 0.91265 0.92497 0.85517 0.85746 0.89500 0.92746 0.88011 0.88240 0.88255 0.86181 0.82187 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.68 37.16 0.36 -1.53 16 2 C -0.16 -2.28 5.57 -26.73 -0.15 -2.43 16 3 C 0.10 1.63 2.03 -67.72 -0.14 1.49 16 4 H 0.09 1.71 7.25 -51.93 -0.38 1.34 16 5 N -0.83 -12.08 8.72 -4.67 -0.04 -12.12 16 6 C -0.07 -1.38 4.31 -27.88 -0.12 -1.50 16 7 C -0.05 -1.18 4.89 -104.48 -0.51 -1.69 16 8 C -0.12 -2.33 9.48 -39.52 -0.37 -2.70 16 9 C -0.17 -3.36 10.03 -39.56 -0.40 -3.76 16 10 C -0.09 -1.98 10.10 -39.27 -0.40 -2.37 16 11 C -0.12 -2.90 6.37 -105.09 -0.67 -3.57 16 12 C -0.29 -6.93 11.09 -37.57 -0.42 -7.35 16 13 C 0.09 2.25 9.83 -16.63 -0.16 2.09 16 14 N -0.29 -7.60 2.90 -59.74 -0.17 -7.77 16 15 C -0.34 -8.70 8.61 -14.92 -0.13 -8.82 16 16 H 0.11 2.66 4.18 -52.49 -0.22 2.44 16 17 C 0.04 1.05 5.34 -17.49 -0.09 0.95 16 18 N -0.85 -22.10 11.13 55.49 0.62 -21.48 16 19 Si 0.93 18.82 29.57 -169.99 -5.03 13.79 16 20 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 23 C 0.06 1.57 6.70 -83.84 -0.56 1.01 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.54 6.90 -51.93 -0.36 0.19 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.33 4.28 7.61 -39.29 -0.30 3.98 16 30 H 0.33 4.18 8.99 -39.29 -0.35 3.83 16 31 H 0.09 1.81 5.83 -51.93 -0.30 1.50 16 32 H 0.05 0.91 8.05 -51.93 -0.42 0.49 16 33 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 35 H 0.10 1.88 8.06 -52.49 -0.42 1.45 16 36 H 0.12 2.58 8.06 -52.49 -0.42 2.15 16 37 H 0.16 4.11 6.67 -52.48 -0.35 3.76 16 38 H 0.28 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 306.26 15.07 4.62 4.62 Total: -1.00 -27.76 306.26 -8.96 -36.72 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -5.19 Total: 16.43 kcal Atomic # 6 Polarization: -26.42 SS G_CDS: -3.76 Total: -30.18 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.40 Total: -41.38 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.76 -8.96 -36.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229739733.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.043 kcal (2) G-P(sol) polarization free energy of solvation -27.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds