Wall clock time and date at job start Mon Mar 30 2020 07:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47073 * 2 1 4 4 H 1.09003 * 109.47091 * 304.99615 * 3 2 1 5 5 N 1.46898 * 109.47439 * 64.99663 * 3 2 1 6 6 C 1.52999 * 109.47158 * 185.00169 * 3 2 1 7 7 C 1.50701 * 109.47586 * 175.65324 * 6 3 2 8 8 C 1.37939 * 120.04078 * 94.75750 * 7 6 3 9 9 C 1.38707 * 120.64436 * 180.02562 * 8 7 6 10 10 C 1.37824 * 120.36536 * 359.97438 * 9 8 7 11 11 C 1.39478 * 119.65331 * 359.97438 * 10 9 8 12 12 C 1.46668 * 133.97133 * 179.97438 * 11 10 9 13 13 C 1.34303 * 107.04833 * 180.02562 * 12 11 10 14 14 N 1.36996 * 109.94210 * 359.97438 * 13 12 11 15 15 C 1.37210 * 125.09155 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00008 * 205.68315 * 15 14 13 17 17 C 1.38853 * 119.99716 * 25.68518 * 15 14 13 18 18 N 1.31434 * 120.00316 * 11.03581 * 17 15 14 19 19 Si 1.86802 * 119.99531 * 191.03838 * 17 15 14 20 20 H 1.48496 * 109.47445 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46806 * 120.00146 * 19 17 15 22 22 H 1.48502 * 109.46917 * 239.99916 * 19 17 15 23 23 C 1.38119 * 109.81901 * 0.02562 * 14 13 12 24 24 H 1.08999 * 109.46931 * 60.00546 * 1 2 3 25 25 H 1.09005 * 109.47264 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47150 * 300.00039 * 1 2 3 27 27 H 1.08995 * 109.47100 * 239.99223 * 2 1 3 28 28 H 1.08999 * 109.46931 * 119.99454 * 2 1 3 29 29 H 1.00902 * 110.99926 * 294.67837 * 5 3 2 30 30 H 1.00896 * 110.99994 * 58.63570 * 5 3 2 31 31 H 1.09003 * 109.47662 * 55.64951 * 6 3 2 32 32 H 1.09004 * 109.46995 * 295.64956 * 6 3 2 33 33 H 1.08001 * 119.67759 * 359.97438 * 8 7 6 34 34 H 1.07998 * 119.81255 * 179.70536 * 9 8 7 35 35 H 1.07993 * 120.16952 * 179.97438 * 10 9 8 36 36 H 1.07992 * 126.47674 * 0.07326 * 12 11 10 37 37 H 1.08003 * 125.02436 * 180.02562 * 13 12 11 38 38 H 0.96999 * 120.00372 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 7 1.6514 2.0993 1.2551 6 6 3.5648 1.4443 -0.1258 7 6 4.0584 2.8642 -0.2332 8 6 4.4754 3.5376 0.8961 9 6 4.9315 4.8448 0.8118 10 6 4.9749 5.4904 -0.4051 11 6 4.5575 4.8222 -1.5561 12 6 4.4704 5.1914 -2.9729 13 6 3.9862 4.1241 -3.6288 14 7 3.7559 3.0998 -2.7488 15 6 3.2616 1.8653 -3.0871 16 1 2.7296 1.2772 -2.3540 17 6 3.4455 1.3722 -4.3721 18 7 4.2701 1.9783 -5.1968 19 14 2.5209 -0.1525 -4.9285 20 1 1.6621 -0.6426 -3.8205 21 1 1.6735 0.1828 -6.1010 22 1 3.4924 -1.2103 -5.3061 23 6 4.0957 3.4957 -1.4699 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 0.6484 2.1884 1.3211 30 1 2.0237 1.6053 2.0522 31 1 3.8566 0.8898 -1.0177 32 1 4.0025 0.9732 0.7543 33 1 4.4457 3.0424 1.8555 34 1 5.2503 5.3609 1.7053 35 1 5.3302 6.5083 -0.4671 36 1 4.7446 6.1415 -3.4068 37 1 3.8059 4.0798 -4.6928 38 1 4.3983 1.6341 -6.0946 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229739733.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:20 Heat of formation + Delta-G solvation = 26.351840 kcal Electronic energy + Delta-G solvation = -19627.051818 eV Core-core repulsion = 16854.288510 eV Total energy + Delta-G solvation = -2772.763307 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.79864 -38.53384 -37.41802 -34.95384 -33.43353 -31.63269 -30.83247 -29.30472 -28.71634 -26.40034 -24.61076 -22.45642 -22.15537 -21.44075 -21.21271 -19.02519 -17.55303 -16.99153 -16.55810 -16.24112 -15.86479 -15.70238 -15.26174 -15.03313 -14.81638 -14.30098 -14.18878 -13.70457 -13.49904 -13.25339 -13.12739 -12.94891 -12.74598 -12.46366 -12.30074 -12.15029 -12.09214 -11.89746 -11.72517 -11.60012 -11.21980 -10.97328 -10.02001 -9.41244 -8.68240 -8.64669 -8.24219 -6.14227 0.63479 1.11538 1.34003 1.40341 1.48531 2.11282 2.28240 3.00169 3.15598 3.38342 3.75730 3.92272 4.15581 4.19626 4.31076 4.34931 4.45788 4.61183 4.74418 4.79032 4.79790 4.83082 4.93918 5.02845 5.06977 5.10976 5.22246 5.30074 5.35772 5.39255 5.47870 5.56635 5.62054 5.89648 6.04586 6.06220 6.41191 6.43005 6.55826 6.65810 6.80390 7.23521 7.68708 8.51059 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.013780 B = 0.011275 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.453654 B = 2482.670184 C = 4212.427279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.155 4.155 3 C 0.111 3.889 4 H 0.045 0.955 5 N -0.835 5.835 6 C -0.069 4.069 7 C -0.069 4.069 8 C -0.111 4.111 9 C -0.160 4.160 10 C -0.105 4.105 11 C -0.149 4.149 12 C -0.292 4.292 13 C 0.057 3.943 14 N -0.308 5.308 15 C -0.363 4.363 16 H 0.123 0.877 17 C -0.003 4.003 18 N -0.889 5.889 19 Si 0.993 3.007 20 H -0.249 1.249 21 H -0.272 1.272 22 H -0.273 1.273 23 C 0.031 3.969 24 H 0.041 0.959 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.343 0.657 30 H 0.346 0.654 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.122 0.878 36 H 0.139 0.861 37 H 0.148 0.852 38 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.972 -3.746 10.077 11.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.195 4.195 3 C -0.001 4.001 4 H 0.063 0.937 5 N -0.366 5.366 6 C -0.107 4.107 7 C -0.071 4.071 8 C -0.131 4.131 9 C -0.179 4.179 10 C -0.124 4.124 11 C -0.154 4.154 12 C -0.317 4.317 13 C -0.077 4.077 14 N 0.027 4.973 15 C -0.490 4.490 16 H 0.140 0.860 17 C -0.207 4.207 18 N -0.523 5.523 19 Si 0.814 3.186 20 H -0.173 1.173 21 H -0.197 1.197 22 H -0.198 1.198 23 C -0.079 4.079 24 H 0.060 0.940 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.157 0.843 30 H 0.159 0.841 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.153 0.847 34 H 0.157 0.843 35 H 0.140 0.860 36 H 0.157 0.843 37 H 0.165 0.835 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.623 -3.480 9.473 11.100 hybrid contribution -0.543 -1.242 -1.017 1.695 sum -5.166 -4.722 8.455 10.976 Atomic orbital electron populations 1.21760 0.94805 1.02330 1.01774 1.22326 0.97162 0.97543 1.02472 1.21148 0.93849 0.92318 0.92744 0.93685 1.58728 1.17166 1.57543 1.03197 1.20631 0.95290 0.93008 1.01776 1.18827 1.02089 0.96401 0.89796 1.20615 1.01108 0.94864 0.96498 1.20946 1.04443 0.95632 0.96927 1.20535 1.01285 0.99352 0.91222 1.19420 1.06900 0.94830 0.94292 1.21522 1.17910 1.00054 0.92195 1.21824 1.02940 0.86841 0.96104 1.40267 1.43408 1.09819 1.03765 1.20486 1.35186 0.94209 0.99109 0.85972 1.26439 0.95835 1.02328 0.96121 1.70042 1.32199 1.42022 1.07992 0.84879 0.78184 0.76476 0.79072 1.17253 1.19670 1.19796 1.18817 1.05777 0.95876 0.87469 0.94025 0.91514 0.91412 0.93044 0.90240 0.84304 0.84051 0.92274 0.90184 0.84699 0.84293 0.85969 0.84307 0.83462 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.68 71.98 0.70 -2.68 16 2 C -0.16 -4.10 5.57 30.59 0.17 -3.93 16 3 C 0.11 3.57 2.03 44.91 0.09 3.66 16 4 H 0.04 1.83 7.25 -2.39 -0.02 1.81 16 5 N -0.84 -22.06 8.72 -168.69 -1.47 -23.53 16 6 C -0.07 -2.54 4.31 29.85 0.13 -2.41 16 7 C -0.07 -2.94 4.89 -19.77 -0.10 -3.04 16 8 C -0.11 -4.09 9.48 22.31 0.21 -3.88 16 9 C -0.16 -5.79 10.03 22.28 0.22 -5.57 16 10 C -0.11 -4.34 10.10 22.47 0.23 -4.12 16 11 C -0.15 -7.35 6.37 -20.17 -0.13 -7.48 16 12 C -0.29 -14.66 11.09 23.57 0.26 -14.40 16 13 C 0.06 3.12 9.83 82.99 0.82 3.93 16 14 N -0.31 -16.80 2.90 -342.90 -1.00 -17.79 16 15 C -0.36 -19.07 8.61 84.00 0.72 -18.34 16 16 H 0.12 5.98 4.18 -2.91 -0.01 5.97 16 17 C 0.00 -0.16 5.34 84.90 0.45 0.29 16 18 N -0.89 -48.17 11.13 21.64 0.24 -47.92 16 19 Si 0.99 39.30 29.57 68.60 2.03 41.33 16 20 H -0.25 -9.18 7.11 99.48 0.71 -8.48 16 21 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 22 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 23 C 0.03 1.57 6.70 38.92 0.26 1.83 16 24 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 26 H 0.07 1.28 6.90 -2.39 -0.02 1.26 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.34 7.94 7.61 -89.69 -0.68 7.26 16 30 H 0.35 7.40 8.99 -89.70 -0.81 6.59 16 31 H 0.06 2.50 5.83 -2.39 -0.01 2.48 16 32 H 0.08 2.46 8.05 -2.39 -0.02 2.44 16 33 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 34 H 0.14 3.93 8.06 -2.91 -0.02 3.90 16 35 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 36 H 0.14 6.13 8.06 -2.91 -0.02 6.11 16 37 H 0.15 8.15 6.67 -2.91 -0.02 8.13 16 38 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -62.55 306.26 3.43 -59.12 By element: Atomic # 1 Polarization: 45.34 SS G_CDS: -0.41 Total: 44.93 kcal Atomic # 6 Polarization: -60.17 SS G_CDS: 4.04 Total: -56.13 kcal Atomic # 7 Polarization: -87.02 SS G_CDS: -2.22 Total: -89.25 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -62.55 3.43 -59.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229739733.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.473 kcal (2) G-P(sol) polarization free energy of solvation -62.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds