Wall clock time and date at job start Mon Mar 30 2020 07:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47108 * 2 1 4 4 H 1.09008 * 109.47102 * 54.99878 * 3 2 1 5 5 N 1.46897 * 109.47094 * 295.00161 * 3 2 1 6 6 C 1.52994 * 109.47210 * 174.99772 * 3 2 1 7 7 C 1.50697 * 109.47110 * 185.00183 * 6 3 2 8 8 C 1.37943 * 120.03907 * 266.48194 * 7 6 3 9 9 C 1.38703 * 120.64693 * 179.97438 * 8 7 6 10 10 C 1.37822 * 120.36895 * 0.02562 * 9 8 7 11 11 C 1.39475 * 119.64688 * 359.97438 * 10 9 8 12 12 C 1.46673 * 133.96735 * 179.97438 * 11 10 9 13 13 C 1.34309 * 107.04810 * 179.28211 * 12 11 10 14 14 N 1.37006 * 109.93934 * 0.65353 * 13 12 11 15 15 C 1.37199 * 125.09146 * 179.38193 * 14 13 12 16 16 H 1.07998 * 119.99953 * 149.06505 * 15 14 13 17 17 C 1.38855 * 120.00008 * 329.06834 * 15 14 13 18 18 N 1.31433 * 120.00184 * 351.23697 * 17 15 14 19 19 Si 1.86806 * 119.99911 * 171.23873 * 17 15 14 20 20 H 1.48497 * 109.47088 * 89.99787 * 19 17 15 21 21 H 1.48496 * 109.46885 * 209.99730 * 19 17 15 22 22 H 1.48494 * 109.47065 * 329.99713 * 19 17 15 23 23 C 1.38114 * 109.81820 * 359.42399 * 14 13 12 24 24 H 1.09001 * 109.47363 * 300.00169 * 1 2 3 25 25 H 1.09001 * 109.47050 * 60.00173 * 1 2 3 26 26 H 1.09002 * 109.46872 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46936 * 240.00119 * 2 1 3 28 28 H 1.09001 * 109.47050 * 119.99827 * 2 1 3 29 29 H 1.00904 * 111.00055 * 176.04950 * 5 3 2 30 30 H 1.00897 * 110.99877 * 299.99926 * 5 3 2 31 31 H 1.09008 * 109.47382 * 305.00052 * 6 3 2 32 32 H 1.09000 * 109.46966 * 64.99980 * 6 3 2 33 33 H 1.08006 * 119.67648 * 0.02562 * 8 7 6 34 34 H 1.08004 * 119.81901 * 179.97438 * 9 8 7 35 35 H 1.07992 * 120.17671 * 179.97438 * 10 9 8 36 36 H 1.07997 * 126.47304 * 359.96629 * 12 11 10 37 37 H 1.07999 * 125.02761 * 180.02562 * 13 12 11 38 38 H 0.97001 * 120.00264 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8419 5 7 1.6514 2.0993 -1.2552 6 6 3.5648 1.4444 0.1258 7 6 4.0569 2.8634 0.2493 8 6 4.4491 3.5587 -0.8756 9 6 4.9036 4.8654 -0.7766 10 6 4.9703 5.4887 0.4508 11 6 4.5771 4.7986 1.5974 12 6 4.5186 5.1413 3.0223 13 6 4.0344 4.0666 3.6662 14 7 3.7910 3.0570 2.7726 15 6 3.3040 1.8163 3.0979 16 1 2.6890 1.2760 2.3935 17 6 3.6018 1.2553 4.3326 18 7 4.4850 1.8288 5.1192 19 14 2.7472 -0.3144 4.8760 20 1 3.5388 -1.4889 4.4297 21 1 2.6323 -0.3284 6.3564 22 1 1.3912 -0.3737 4.2737 23 6 4.1102 3.4749 1.4955 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.9204 3.0718 -1.2528 30 1 2.0422 1.6180 -2.0512 31 1 3.8571 0.8801 1.0114 32 1 4.0029 0.9836 -0.7596 33 1 4.4011 3.0811 -1.8432 34 1 5.2077 5.3971 -1.6661 35 1 5.3250 6.5061 0.5245 36 1 4.8002 6.0838 3.4680 37 1 3.8715 4.0039 4.7320 38 1 4.6934 1.4367 5.9816 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229739743.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:47 Heat of formation + Delta-G solvation = 36.528136 kcal Electronic energy + Delta-G solvation = -19646.929247 eV Core-core repulsion = 16874.607217 eV Total energy + Delta-G solvation = -2772.322030 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.19397 -37.16173 -35.82896 -33.18694 -31.86030 -30.54065 -29.17447 -27.73383 -27.11163 -24.68427 -23.24024 -20.93250 -20.59126 -20.04397 -19.51455 -17.36063 -16.03887 -15.57366 -14.94429 -14.65774 -14.32404 -14.30959 -13.88881 -13.34380 -13.18978 -12.90907 -12.67458 -12.29864 -11.90280 -11.81091 -11.52871 -11.40484 -11.32788 -10.91009 -10.81353 -10.62580 -10.59428 -10.54841 -10.36838 -10.05912 -9.67007 -9.22048 -8.59085 -8.15576 -7.04663 -6.88483 -6.54870 -4.34283 2.11951 2.63843 2.97760 3.02115 3.05902 3.79341 4.04522 4.74884 4.82227 4.92433 5.04371 5.22407 5.46798 5.64117 5.67468 5.74757 5.87184 5.95339 6.08229 6.13393 6.21558 6.31916 6.36142 6.42837 6.48552 6.62288 6.63894 6.69664 6.94563 7.00618 7.09646 7.13675 7.16868 7.45585 7.55533 7.61948 7.67117 7.86356 8.00214 8.14219 8.46414 8.97596 9.44727 10.30336 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.013772 B = 0.011291 C = 0.006662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.597359 B = 2479.261322 C = 4201.752019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C 0.097 3.903 4 H 0.084 0.916 5 N -0.841 5.841 6 C -0.116 4.116 7 C -0.071 4.071 8 C -0.142 4.142 9 C -0.169 4.169 10 C -0.087 4.087 11 C -0.118 4.118 12 C -0.282 4.282 13 C 0.092 3.908 14 N -0.287 5.287 15 C -0.350 4.350 16 H 0.113 0.887 17 C 0.046 3.954 18 N -0.852 5.852 19 Si 0.926 3.074 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.261 1.261 23 C 0.065 3.935 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.041 0.959 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.344 0.656 30 H 0.329 0.671 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.123 0.877 37 H 0.158 0.842 38 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.076 -1.358 -6.697 7.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.014 4.014 4 H 0.102 0.898 5 N -0.369 5.369 6 C -0.155 4.155 7 C -0.073 4.073 8 C -0.162 4.162 9 C -0.189 4.189 10 C -0.106 4.106 11 C -0.124 4.124 12 C -0.306 4.306 13 C -0.042 4.042 14 N 0.050 4.950 15 C -0.477 4.477 16 H 0.130 0.870 17 C -0.163 4.163 18 N -0.484 5.484 19 Si 0.751 3.249 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.046 4.046 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.157 0.843 30 H 0.140 0.860 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.140 0.860 37 H 0.176 0.824 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.883 -1.920 -6.125 7.502 hybrid contribution 1.015 -0.536 0.385 1.211 sum -2.868 -2.456 -5.740 6.871 Atomic orbital electron populations 1.21653 0.95640 1.00239 1.02410 1.21543 0.96410 0.95974 1.01389 1.21465 0.92209 0.94702 0.93042 0.89777 1.59043 1.66808 1.07321 1.03763 1.21467 0.96764 0.94490 1.02829 1.18608 1.03001 0.95123 0.90535 1.20294 1.04950 0.95066 0.95883 1.20443 1.06499 0.95616 0.96351 1.20242 1.00706 0.98253 0.91365 1.19051 1.05476 0.94312 0.93513 1.21252 1.18049 0.99925 0.91410 1.21782 1.00503 0.85906 0.96009 1.40070 1.42641 1.09608 1.02729 1.19973 1.31306 0.93521 1.02874 0.86979 1.25532 0.94836 0.99511 0.96380 1.69901 1.27833 1.40024 1.10621 0.85914 0.80038 0.80488 0.78471 1.19634 1.20137 1.18548 1.18219 1.04619 0.94851 0.86943 0.93090 0.91791 0.93956 0.92640 0.91790 0.84260 0.85979 0.89137 0.92678 0.88015 0.87937 0.87938 0.85951 0.82438 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.80 37.16 0.36 -1.64 16 2 C -0.12 -1.73 5.58 -26.73 -0.15 -1.88 16 3 C 0.10 1.64 2.05 -67.72 -0.14 1.50 16 4 H 0.08 1.69 7.27 -51.92 -0.38 1.31 16 5 N -0.84 -12.54 8.61 -4.67 -0.04 -12.58 16 6 C -0.12 -2.14 4.30 -27.89 -0.12 -2.26 16 7 C -0.07 -1.46 4.64 -104.48 -0.48 -1.94 16 8 C -0.14 -2.62 8.62 -39.52 -0.34 -2.96 16 9 C -0.17 -3.11 10.03 -39.56 -0.40 -3.51 16 10 C -0.09 -1.76 10.10 -39.27 -0.40 -2.16 16 11 C -0.12 -2.75 6.37 -105.09 -0.67 -3.42 16 12 C -0.28 -6.58 11.09 -37.56 -0.42 -7.00 16 13 C 0.09 2.31 9.79 -16.63 -0.16 2.14 16 14 N -0.29 -7.31 2.88 -59.73 -0.17 -7.48 16 15 C -0.35 -8.71 8.41 -14.92 -0.13 -8.84 16 16 H 0.11 2.63 4.47 -52.49 -0.23 2.40 16 17 C 0.05 1.13 5.35 -17.49 -0.09 1.04 16 18 N -0.85 -21.89 11.37 55.49 0.63 -21.26 16 19 Si 0.93 18.74 29.56 -169.99 -5.03 13.71 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 23 C 0.07 1.57 6.70 -83.84 -0.56 1.00 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.89 7.75 -51.93 -0.40 0.49 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.34 5.42 7.50 -39.29 -0.29 5.13 16 30 H 0.33 4.30 9.00 -39.29 -0.35 3.94 16 31 H 0.09 1.89 5.84 -51.92 -0.30 1.58 16 32 H 0.05 0.91 8.06 -51.93 -0.42 0.49 16 33 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 34 H 0.10 1.58 8.06 -52.48 -0.42 1.16 16 35 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.12 2.52 8.06 -52.49 -0.42 2.09 16 37 H 0.16 3.92 6.95 -52.49 -0.36 3.56 16 38 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 306.52 15.07 4.62 4.62 Total: -1.00 -26.48 306.52 -8.95 -35.43 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -5.27 Total: 17.47 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: -3.69 Total: -29.91 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.42 Total: -41.31 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -26.48 -8.95 -35.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229739743.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.955 kcal (2) G-P(sol) polarization free energy of solvation -26.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds