Wall clock time and date at job start Mon Mar 30 2020 07:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47108 * 2 1 4 4 H 1.09008 * 109.47102 * 54.99878 * 3 2 1 5 5 N 1.46897 * 109.47094 * 295.00161 * 3 2 1 6 6 C 1.52994 * 109.47210 * 174.99772 * 3 2 1 7 7 C 1.50697 * 109.47110 * 185.00183 * 6 3 2 8 8 C 1.37943 * 120.03907 * 266.48194 * 7 6 3 9 9 C 1.38703 * 120.64693 * 179.97438 * 8 7 6 10 10 C 1.37822 * 120.36895 * 0.02562 * 9 8 7 11 11 C 1.39475 * 119.64688 * 359.97438 * 10 9 8 12 12 C 1.46673 * 133.96735 * 179.97438 * 11 10 9 13 13 C 1.34309 * 107.04810 * 179.28211 * 12 11 10 14 14 N 1.37006 * 109.93934 * 0.65353 * 13 12 11 15 15 C 1.37199 * 125.09146 * 179.38193 * 14 13 12 16 16 H 1.07998 * 119.99953 * 149.06505 * 15 14 13 17 17 C 1.38855 * 120.00008 * 329.06834 * 15 14 13 18 18 N 1.31433 * 120.00184 * 351.23697 * 17 15 14 19 19 Si 1.86806 * 119.99911 * 171.23873 * 17 15 14 20 20 H 1.48497 * 109.47088 * 89.99787 * 19 17 15 21 21 H 1.48496 * 109.46885 * 209.99730 * 19 17 15 22 22 H 1.48494 * 109.47065 * 329.99713 * 19 17 15 23 23 C 1.38114 * 109.81820 * 359.42399 * 14 13 12 24 24 H 1.09001 * 109.47363 * 300.00169 * 1 2 3 25 25 H 1.09001 * 109.47050 * 60.00173 * 1 2 3 26 26 H 1.09002 * 109.46872 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46936 * 240.00119 * 2 1 3 28 28 H 1.09001 * 109.47050 * 119.99827 * 2 1 3 29 29 H 1.00904 * 111.00055 * 176.04950 * 5 3 2 30 30 H 1.00897 * 110.99877 * 299.99926 * 5 3 2 31 31 H 1.09008 * 109.47382 * 305.00052 * 6 3 2 32 32 H 1.09000 * 109.46966 * 64.99980 * 6 3 2 33 33 H 1.08006 * 119.67648 * 0.02562 * 8 7 6 34 34 H 1.08004 * 119.81901 * 179.97438 * 9 8 7 35 35 H 1.07992 * 120.17671 * 179.97438 * 10 9 8 36 36 H 1.07997 * 126.47304 * 359.96629 * 12 11 10 37 37 H 1.07999 * 125.02761 * 180.02562 * 13 12 11 38 38 H 0.97001 * 120.00264 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8419 5 7 1.6514 2.0993 -1.2552 6 6 3.5648 1.4444 0.1258 7 6 4.0569 2.8634 0.2493 8 6 4.4491 3.5587 -0.8756 9 6 4.9036 4.8654 -0.7766 10 6 4.9703 5.4887 0.4508 11 6 4.5771 4.7986 1.5974 12 6 4.5186 5.1413 3.0223 13 6 4.0344 4.0666 3.6662 14 7 3.7910 3.0570 2.7726 15 6 3.3040 1.8163 3.0979 16 1 2.6890 1.2760 2.3935 17 6 3.6018 1.2553 4.3326 18 7 4.4850 1.8288 5.1192 19 14 2.7472 -0.3144 4.8760 20 1 3.5388 -1.4889 4.4297 21 1 2.6323 -0.3284 6.3564 22 1 1.3912 -0.3737 4.2737 23 6 4.1102 3.4749 1.4955 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.9204 3.0718 -1.2528 30 1 2.0422 1.6180 -2.0512 31 1 3.8571 0.8801 1.0114 32 1 4.0029 0.9836 -0.7596 33 1 4.4011 3.0811 -1.8432 34 1 5.2077 5.3971 -1.6661 35 1 5.3250 6.5061 0.5245 36 1 4.8002 6.0838 3.4680 37 1 3.8715 4.0039 4.7320 38 1 4.6934 1.4367 5.9816 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229739743.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:42 Heat of formation + Delta-G solvation = 22.765707 kcal Electronic energy + Delta-G solvation = -19647.526031 eV Core-core repulsion = 16874.607217 eV Total energy + Delta-G solvation = -2772.918814 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.89578 -38.61793 -37.36476 -34.95377 -33.38504 -31.87129 -30.81542 -29.40668 -28.60813 -26.43252 -24.61084 -22.50679 -22.25736 -21.42957 -21.25029 -19.08054 -17.63218 -17.05848 -16.63643 -16.28602 -15.83824 -15.64263 -15.39708 -14.88074 -14.76218 -14.27563 -14.22285 -13.79494 -13.52077 -13.37499 -13.18897 -12.95701 -12.73494 -12.45669 -12.34094 -12.20996 -12.11190 -11.86463 -11.69143 -11.64654 -11.17861 -11.01393 -10.19814 -9.50752 -8.75071 -8.69438 -8.31250 -6.22763 0.49533 1.02933 1.33574 1.37335 1.47366 2.08811 2.24073 2.94772 3.08943 3.27290 3.77793 3.86456 4.14419 4.23368 4.30353 4.39404 4.43351 4.52696 4.69589 4.73820 4.80569 4.82973 5.01151 5.02540 5.08355 5.16144 5.20248 5.28670 5.37177 5.39599 5.48358 5.50404 5.53161 5.87405 5.89492 5.95319 6.29504 6.35998 6.46839 6.61219 6.72873 7.16605 7.62812 8.48179 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.013772 B = 0.011291 C = 0.006662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.597359 B = 2479.261322 C = 4201.752019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 C 0.110 3.890 4 H 0.044 0.956 5 N -0.832 5.832 6 C -0.108 4.108 7 C -0.088 4.088 8 C -0.129 4.129 9 C -0.158 4.158 10 C -0.098 4.098 11 C -0.147 4.147 12 C -0.287 4.287 13 C 0.062 3.938 14 N -0.307 5.307 15 C -0.366 4.366 16 H 0.119 0.881 17 C 0.001 3.999 18 N -0.889 5.889 19 Si 0.990 3.010 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.253 1.253 23 C 0.034 3.966 24 H 0.033 0.967 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.052 0.948 29 H 0.341 0.659 30 H 0.345 0.655 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.126 0.874 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.310 -2.014 -9.660 10.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.152 4.152 3 C -0.002 4.002 4 H 0.062 0.938 5 N -0.362 5.362 6 C -0.148 4.148 7 C -0.090 4.090 8 C -0.149 4.149 9 C -0.177 4.177 10 C -0.117 4.117 11 C -0.152 4.152 12 C -0.311 4.311 13 C -0.072 4.072 14 N 0.029 4.971 15 C -0.493 4.493 16 H 0.136 0.864 17 C -0.203 4.203 18 N -0.522 5.522 19 Si 0.811 3.189 20 H -0.190 1.190 21 H -0.198 1.198 22 H -0.177 1.177 23 C -0.077 4.077 24 H 0.052 0.948 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.154 0.846 30 H 0.158 0.842 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.157 0.843 34 H 0.162 0.838 35 H 0.144 0.856 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.118 -2.569 -9.117 10.329 hybrid contribution 1.137 -0.222 1.128 1.617 sum -2.981 -2.791 -7.989 8.972 Atomic orbital electron populations 1.21615 0.94852 1.01313 1.01732 1.21535 0.97067 0.94623 1.01937 1.21211 0.90879 0.95504 0.92600 0.93801 1.58971 1.66702 1.07086 1.03414 1.21414 0.97882 0.93040 1.02437 1.18999 1.03496 0.96418 0.90107 1.20754 1.02472 0.95088 0.96547 1.20959 1.04180 0.95556 0.97000 1.20603 1.00582 0.99427 0.91056 1.19454 1.06691 0.94798 0.94277 1.21553 1.17371 1.00155 0.92064 1.21778 1.02604 0.87070 0.95796 1.40231 1.43655 1.09766 1.03458 1.20333 1.31607 0.93797 1.03525 0.86375 1.26450 0.95226 1.02508 0.96152 1.70017 1.29432 1.41679 1.11070 0.84969 0.79255 0.76666 0.77996 1.18951 1.19812 1.17677 1.18823 1.05551 0.95755 0.87532 0.94765 0.91439 0.92019 0.90368 0.92917 0.84636 0.84195 0.92192 0.90128 0.84278 0.83816 0.85600 0.84026 0.83821 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.80 71.98 0.71 -2.93 16 2 C -0.11 -3.22 5.58 30.60 0.17 -3.05 16 3 C 0.11 3.60 2.05 44.92 0.09 3.70 16 4 H 0.04 1.80 7.27 -2.38 -0.02 1.79 16 5 N -0.83 -22.75 8.61 -168.68 -1.45 -24.20 16 6 C -0.11 -3.88 4.30 29.85 0.13 -3.76 16 7 C -0.09 -3.55 4.64 -19.77 -0.09 -3.64 16 8 C -0.13 -4.30 8.62 22.31 0.19 -4.11 16 9 C -0.16 -5.17 10.03 22.28 0.22 -4.95 16 10 C -0.10 -3.77 10.10 22.47 0.23 -3.54 16 11 C -0.15 -6.89 6.37 -20.17 -0.13 -7.02 16 12 C -0.29 -13.86 11.09 23.58 0.26 -13.59 16 13 C 0.06 3.26 9.79 82.99 0.81 4.08 16 14 N -0.31 -16.35 2.88 -342.90 -0.99 -17.34 16 15 C -0.37 -19.06 8.41 84.00 0.71 -18.35 16 16 H 0.12 5.79 4.47 -2.91 -0.01 5.78 16 17 C 0.00 0.06 5.35 84.90 0.45 0.52 16 18 N -0.89 -47.88 11.37 21.65 0.25 -47.64 16 19 Si 0.99 39.29 29.56 68.60 2.03 41.32 16 20 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 21 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 22 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 23 C 0.03 1.66 6.70 38.93 0.26 1.92 16 24 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 1.72 7.75 -2.39 -0.02 1.70 16 26 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.34 9.89 7.50 -89.69 -0.67 9.22 16 30 H 0.34 7.66 9.00 -89.70 -0.81 6.85 16 31 H 0.06 2.53 5.84 -2.38 -0.01 2.51 16 32 H 0.08 2.42 8.06 -2.39 -0.02 2.40 16 33 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 34 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 35 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 36 H 0.14 5.98 8.06 -2.91 -0.02 5.96 16 37 H 0.14 7.75 6.95 -2.91 -0.02 7.73 16 38 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -60.03 306.52 3.45 -56.59 By element: Atomic # 1 Polarization: 46.40 SS G_CDS: -0.40 Total: 45.99 kcal Atomic # 6 Polarization: -58.74 SS G_CDS: 4.01 Total: -54.73 kcal Atomic # 7 Polarization: -86.98 SS G_CDS: -2.19 Total: -89.18 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -60.03 3.45 -56.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229739743.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.354 kcal (2) G-P(sol) polarization free energy of solvation -60.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds