Wall clock time and date at job start Mon Mar 30 2020 07:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46822 * 2 1 4 4 H 1.08994 * 109.47552 * 304.99849 * 3 2 1 5 5 N 1.46898 * 109.47025 * 65.00615 * 3 2 1 6 6 C 1.52997 * 109.46648 * 185.00222 * 3 2 1 7 7 C 1.50700 * 109.47297 * 175.00333 * 6 3 2 8 8 C 1.38753 * 119.81413 * 269.98201 * 7 6 3 9 9 C 1.37905 * 120.64536 * 180.02562 * 8 7 6 10 10 C 1.38958 * 119.91957 * 359.95909 * 9 8 7 11 11 C 1.40690 * 119.45946 * 0.03108 * 10 9 8 12 12 C 1.46664 * 106.07841 * 180.02562 * 11 10 9 13 13 C 1.34302 * 107.05007 * 359.74192 * 12 11 10 14 14 N 1.36997 * 109.92837 * 0.43154 * 13 12 11 15 15 C 1.37213 * 125.08997 * 179.81395 * 14 13 12 16 16 H 1.07994 * 120.00151 * 159.04127 * 15 14 13 17 17 C 1.38856 * 119.99722 * 338.76997 * 15 14 13 18 18 N 1.31436 * 120.00340 * 349.30740 * 17 15 14 19 19 Si 1.86807 * 119.99829 * 169.30186 * 17 15 14 20 20 H 1.48497 * 109.46789 * 94.60288 * 19 17 15 21 21 H 1.48496 * 109.47215 * 214.60478 * 19 17 15 22 22 H 1.48498 * 109.47307 * 334.60486 * 19 17 15 23 23 C 1.37785 * 119.81983 * 89.99452 * 7 6 3 24 24 H 1.08996 * 109.47541 * 60.00057 * 1 2 3 25 25 H 1.09001 * 109.47311 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46906 * 299.99814 * 1 2 3 27 27 H 1.09002 * 109.46906 * 240.00186 * 2 1 3 28 28 H 1.08997 * 109.46863 * 120.00262 * 2 1 3 29 29 H 1.00897 * 111.00395 * 59.99525 * 5 3 2 30 30 H 1.00905 * 110.99745 * 183.95162 * 5 3 2 31 31 H 1.08996 * 109.47519 * 55.00187 * 6 3 2 32 32 H 1.09004 * 109.47257 * 294.99780 * 6 3 2 33 33 H 1.07997 * 119.67751 * 0.02562 * 8 7 6 34 34 H 1.07998 * 120.03737 * 180.02562 * 9 8 7 35 35 H 1.08007 * 126.47437 * 180.02562 * 12 11 10 36 36 H 1.08000 * 125.03543 * 180.26189 * 13 12 11 37 37 H 0.97001 * 120.00118 * 180.02562 * 18 17 15 38 38 H 1.07996 * 120.17114 * 359.96484 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6514 2.0992 1.2553 6 6 3.5647 1.4443 -0.1258 7 6 4.0570 2.8633 -0.2492 8 6 4.1839 3.4428 -1.5035 9 6 4.6332 4.7398 -1.6364 10 6 4.9625 5.4784 -0.5064 11 6 4.8338 4.8914 0.7656 12 6 5.2525 5.9146 1.7294 13 6 5.5983 7.0031 1.0228 14 7 5.4265 6.7651 -0.3154 15 6 5.6827 7.6680 -1.3163 16 1 5.8497 7.3222 -2.3257 17 6 5.7216 9.0267 -1.0325 18 7 5.3102 9.4661 0.1359 19 14 6.3590 10.2301 -2.3113 20 1 5.2178 10.7774 -3.0880 21 1 7.0741 11.3407 -1.6329 22 1 7.2917 9.5287 -3.2296 23 6 4.3787 3.5779 0.8840 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.0422 1.6178 2.0513 30 1 1.9204 3.0717 1.2529 31 1 3.8570 0.8800 -1.0114 32 1 4.0029 0.9835 0.7596 33 1 3.9284 2.8725 -2.3844 34 1 4.7279 5.1812 -2.6175 35 1 5.2820 5.8106 2.8040 36 1 5.9560 7.9297 1.4469 37 1 5.3371 10.4153 0.3340 38 1 4.2783 3.1239 1.8587 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229744536.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:15 Heat of formation + Delta-G solvation = 33.930143 kcal Electronic energy + Delta-G solvation = -18636.115682 eV Core-core repulsion = 15863.680994 eV Total energy + Delta-G solvation = -2772.434688 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.06850 -37.76776 -35.59418 -33.23673 -31.44467 -30.78996 -29.81333 -28.10059 -26.64774 -24.85607 -23.17749 -21.52382 -20.48302 -19.98823 -19.41270 -17.60766 -16.05804 -15.67654 -15.14875 -14.65774 -14.42945 -14.35268 -13.85083 -13.36418 -13.32861 -12.96132 -12.90226 -12.32233 -12.16221 -11.95326 -11.69374 -11.40481 -11.31583 -11.25058 -10.90393 -10.82304 -10.71319 -10.62447 -10.37501 -10.16115 -9.83753 -9.24772 -8.59876 -8.44120 -7.04014 -6.90790 -6.60015 -4.32269 2.14162 2.55843 2.97341 3.01004 3.05992 3.78267 4.03897 4.67139 4.81520 4.83567 4.92102 5.06672 5.20767 5.40145 5.46618 5.58455 5.77596 5.82744 5.90160 5.96186 6.01829 6.06198 6.16195 6.35430 6.37713 6.41426 6.43655 6.51600 6.88949 7.03758 7.04747 7.11296 7.15203 7.41379 7.46411 7.54561 7.62709 7.72636 7.97436 8.15094 8.43913 8.97582 9.40407 10.25474 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.038116 B = 0.004419 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.418882 B = 6334.617195 C = 6605.501247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C 0.095 3.905 4 H 0.078 0.922 5 N -0.842 5.842 6 C -0.099 4.099 7 C -0.140 4.140 8 C -0.132 4.132 9 C -0.104 4.104 10 C 0.051 3.949 11 C -0.115 4.115 12 C -0.285 4.285 13 C 0.086 3.914 14 N -0.291 5.291 15 C -0.341 4.341 16 H 0.105 0.895 17 C 0.042 3.958 18 N -0.852 5.852 19 Si 0.939 3.061 20 H -0.272 1.272 21 H -0.275 1.275 22 H -0.264 1.264 23 C -0.082 4.082 24 H 0.048 0.952 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.332 0.668 30 H 0.349 0.651 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.123 0.877 36 H 0.170 0.830 37 H 0.279 0.721 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.118 -10.546 -0.205 10.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.017 4.017 4 H 0.096 0.904 5 N -0.372 5.372 6 C -0.138 4.138 7 C -0.141 4.141 8 C -0.152 4.152 9 C -0.124 4.124 10 C -0.061 4.061 11 C -0.121 4.121 12 C -0.309 4.309 13 C -0.048 4.048 14 N 0.047 4.953 15 C -0.468 4.468 16 H 0.122 0.878 17 C -0.166 4.166 18 N -0.485 5.485 19 Si 0.763 3.237 20 H -0.197 1.197 21 H -0.200 1.200 22 H -0.189 1.189 23 C -0.101 4.101 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.143 0.857 30 H 0.164 0.836 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.141 0.859 36 H 0.187 0.813 37 H 0.090 0.910 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.826 -10.214 -0.572 10.922 hybrid contribution 1.338 0.967 -0.429 1.705 sum -2.488 -9.248 -1.001 9.629 Atomic orbital electron populations 1.21661 0.95542 1.00327 1.02546 1.21555 0.96496 0.95952 1.01300 1.21474 0.92250 0.94469 0.93502 0.90362 1.59022 1.66804 1.07784 1.03559 1.21219 0.96722 0.94180 1.01713 1.19122 1.06462 0.95376 0.93189 1.20259 1.04496 0.94491 0.95976 1.19860 1.02743 0.93917 0.95870 1.18372 1.05019 0.87774 0.94890 1.18994 1.06002 0.94193 0.92883 1.21278 1.18404 0.94298 0.96953 1.22090 1.01051 0.99152 0.82547 1.40236 1.41955 1.07573 1.05562 1.19838 1.49404 0.86663 0.90941 0.87767 1.25494 0.95127 0.97969 0.98023 1.69891 1.40018 1.16489 1.22058 0.85717 0.79192 0.79167 0.79579 1.19737 1.20045 1.18854 1.20037 1.00843 0.92857 0.96314 0.93248 0.93887 0.91560 0.92154 0.92457 0.85688 0.83617 0.91751 0.92255 0.87724 0.87687 0.85929 0.81312 0.91017 0.88261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.80 37.16 0.36 -1.15 16 2 C -0.12 -1.24 5.58 -26.73 -0.15 -1.39 16 3 C 0.10 1.22 2.79 -67.72 -0.19 1.03 16 4 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 5 N -0.84 -11.13 8.57 -4.67 -0.04 -11.17 16 6 C -0.10 -1.36 4.99 -27.88 -0.14 -1.50 16 7 C -0.14 -2.46 4.73 -104.60 -0.49 -2.96 16 8 C -0.13 -2.48 9.67 -39.51 -0.38 -2.87 16 9 C -0.10 -2.26 9.95 -39.44 -0.39 -2.65 16 10 C 0.05 1.26 6.75 -83.84 -0.57 0.69 16 11 C -0.11 -2.65 6.37 -105.10 -0.67 -3.32 16 12 C -0.29 -6.65 11.09 -37.57 -0.42 -7.07 16 13 C 0.09 2.19 9.89 -16.63 -0.16 2.03 16 14 N -0.29 -7.67 2.92 -59.74 -0.17 -7.84 16 15 C -0.34 -8.93 9.93 -14.91 -0.15 -9.07 16 16 H 0.10 2.60 7.85 -52.49 -0.41 2.19 16 17 C 0.04 1.05 5.35 -17.49 -0.09 0.95 16 18 N -0.85 -21.95 10.85 55.49 0.60 -21.35 16 19 Si 0.94 18.94 29.57 -169.99 -5.03 13.92 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 23 C -0.08 -1.58 8.41 -39.27 -0.33 -1.91 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.33 3.92 9.00 -39.29 -0.35 3.56 16 30 H 0.35 5.28 7.32 -39.29 -0.29 4.99 16 31 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 32 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 34 H 0.11 2.17 8.06 -52.49 -0.42 1.75 16 35 H 0.12 2.51 8.06 -52.48 -0.42 2.09 16 36 H 0.17 4.30 6.35 -52.49 -0.33 3.97 16 37 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 38 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 314.19 15.07 4.73 4.73 Total: -1.00 -26.95 314.19 -9.24 -36.19 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -5.57 Total: 14.71 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: -3.77 Total: -29.19 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.39 Total: -40.36 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -26.95 -9.24 -36.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229744536.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.119 kcal (2) G-P(sol) polarization free energy of solvation -26.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds