Wall clock time and date at job start Mon Mar 30 2020 07:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46822 * 2 1 4 4 H 1.08994 * 109.47552 * 304.99849 * 3 2 1 5 5 N 1.46898 * 109.47025 * 65.00615 * 3 2 1 6 6 C 1.52997 * 109.46648 * 185.00222 * 3 2 1 7 7 C 1.50700 * 109.47297 * 175.00333 * 6 3 2 8 8 C 1.38753 * 119.81413 * 269.98201 * 7 6 3 9 9 C 1.37905 * 120.64536 * 180.02562 * 8 7 6 10 10 C 1.38958 * 119.91957 * 359.95909 * 9 8 7 11 11 C 1.40690 * 119.45946 * 0.03108 * 10 9 8 12 12 C 1.46664 * 106.07841 * 180.02562 * 11 10 9 13 13 C 1.34302 * 107.05007 * 359.74192 * 12 11 10 14 14 N 1.36997 * 109.92837 * 0.43154 * 13 12 11 15 15 C 1.37213 * 125.08997 * 179.81395 * 14 13 12 16 16 H 1.07994 * 120.00151 * 159.04127 * 15 14 13 17 17 C 1.38856 * 119.99722 * 338.76997 * 15 14 13 18 18 N 1.31436 * 120.00340 * 349.30740 * 17 15 14 19 19 Si 1.86807 * 119.99829 * 169.30186 * 17 15 14 20 20 H 1.48497 * 109.46789 * 94.60288 * 19 17 15 21 21 H 1.48496 * 109.47215 * 214.60478 * 19 17 15 22 22 H 1.48498 * 109.47307 * 334.60486 * 19 17 15 23 23 C 1.37785 * 119.81983 * 89.99452 * 7 6 3 24 24 H 1.08996 * 109.47541 * 60.00057 * 1 2 3 25 25 H 1.09001 * 109.47311 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46906 * 299.99814 * 1 2 3 27 27 H 1.09002 * 109.46906 * 240.00186 * 2 1 3 28 28 H 1.08997 * 109.46863 * 120.00262 * 2 1 3 29 29 H 1.00897 * 111.00395 * 59.99525 * 5 3 2 30 30 H 1.00905 * 110.99745 * 183.95162 * 5 3 2 31 31 H 1.08996 * 109.47519 * 55.00187 * 6 3 2 32 32 H 1.09004 * 109.47257 * 294.99780 * 6 3 2 33 33 H 1.07997 * 119.67751 * 0.02562 * 8 7 6 34 34 H 1.07998 * 120.03737 * 180.02562 * 9 8 7 35 35 H 1.08007 * 126.47437 * 180.02562 * 12 11 10 36 36 H 1.08000 * 125.03543 * 180.26189 * 13 12 11 37 37 H 0.97001 * 120.00118 * 180.02562 * 18 17 15 38 38 H 1.07996 * 120.17114 * 359.96484 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6514 2.0992 1.2553 6 6 3.5647 1.4443 -0.1258 7 6 4.0570 2.8633 -0.2492 8 6 4.1839 3.4428 -1.5035 9 6 4.6332 4.7398 -1.6364 10 6 4.9625 5.4784 -0.5064 11 6 4.8338 4.8914 0.7656 12 6 5.2525 5.9146 1.7294 13 6 5.5983 7.0031 1.0228 14 7 5.4265 6.7651 -0.3154 15 6 5.6827 7.6680 -1.3163 16 1 5.8497 7.3222 -2.3257 17 6 5.7216 9.0267 -1.0325 18 7 5.3102 9.4661 0.1359 19 14 6.3590 10.2301 -2.3113 20 1 5.2178 10.7774 -3.0880 21 1 7.0741 11.3407 -1.6329 22 1 7.2917 9.5287 -3.2296 23 6 4.3787 3.5779 0.8840 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.0422 1.6178 2.0513 30 1 1.9204 3.0717 1.2529 31 1 3.8570 0.8800 -1.0114 32 1 4.0029 0.9835 0.7596 33 1 3.9284 2.8725 -2.3844 34 1 4.7279 5.1812 -2.6175 35 1 5.2820 5.8106 2.8040 36 1 5.9560 7.9297 1.4469 37 1 5.3371 10.4153 0.3340 38 1 4.2783 3.1239 1.8587 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229744536.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:13 Heat of formation + Delta-G solvation = 20.179785 kcal Electronic energy + Delta-G solvation = -18636.711942 eV Core-core repulsion = 15863.680994 eV Total energy + Delta-G solvation = -2773.030948 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.80890 -39.07996 -36.96365 -35.03833 -32.85105 -32.21683 -31.11514 -29.77370 -28.07943 -26.58365 -24.34979 -23.16631 -21.81978 -21.52841 -20.91325 -19.39278 -17.56089 -17.06739 -16.77115 -16.29913 -15.74777 -15.50920 -15.27213 -14.86650 -14.77365 -14.55049 -14.05220 -13.79808 -13.60249 -13.37235 -13.21525 -12.95402 -12.82449 -12.56944 -12.38451 -12.18250 -12.11345 -11.83307 -11.58648 -11.50956 -11.32008 -11.04902 -10.33410 -9.51910 -8.76288 -8.70546 -8.40471 -6.26030 0.48073 0.93967 1.33665 1.38252 1.49614 2.08567 2.21514 2.89889 3.04833 3.25076 3.82962 3.90085 4.08121 4.22977 4.35037 4.42138 4.48654 4.56588 4.64857 4.74649 4.79685 4.88046 4.95671 5.03154 5.12144 5.17595 5.23292 5.30164 5.37346 5.37723 5.43063 5.49204 5.59641 5.75379 5.78691 5.95960 6.30930 6.38405 6.43911 6.55240 6.70209 7.12707 7.54096 8.40949 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.038116 B = 0.004419 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.418882 B = 6334.617195 C = 6605.501247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 C 0.099 3.901 4 H 0.063 0.937 5 N -0.845 5.845 6 C -0.093 4.093 7 C -0.125 4.125 8 C -0.118 4.118 9 C -0.130 4.130 10 C 0.017 3.983 11 C -0.136 4.136 12 C -0.285 4.285 13 C 0.056 3.944 14 N -0.314 5.314 15 C -0.375 4.375 16 H 0.103 0.897 17 C 0.000 4.000 18 N -0.884 5.884 19 Si 1.012 2.988 20 H -0.266 1.266 21 H -0.267 1.267 22 H -0.259 1.259 23 C -0.080 4.080 24 H 0.043 0.957 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.341 0.659 30 H 0.338 0.662 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.138 0.862 34 H 0.104 0.896 35 H 0.146 0.854 36 H 0.157 0.843 37 H 0.284 0.716 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.622 -12.936 -0.750 13.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.148 4.148 3 C -0.013 4.013 4 H 0.081 0.919 5 N -0.374 5.374 6 C -0.132 4.132 7 C -0.127 4.127 8 C -0.138 4.138 9 C -0.151 4.151 10 C -0.094 4.094 11 C -0.142 4.142 12 C -0.310 4.310 13 C -0.078 4.078 14 N 0.021 4.979 15 C -0.502 4.502 16 H 0.121 0.879 17 C -0.205 4.205 18 N -0.517 5.517 19 Si 0.832 3.168 20 H -0.191 1.191 21 H -0.192 1.192 22 H -0.183 1.183 23 C -0.099 4.099 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.154 0.846 30 H 0.150 0.850 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.156 0.844 34 H 0.122 0.878 35 H 0.164 0.836 36 H 0.174 0.826 37 H 0.094 0.906 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.339 -12.642 -1.105 13.411 hybrid contribution 1.398 1.499 -0.237 2.063 sum -2.942 -11.143 -1.341 11.602 Atomic orbital electron populations 1.21640 0.95564 1.01081 1.01688 1.21525 0.96405 0.94361 1.02476 1.21454 0.91417 0.95699 0.92754 0.91914 1.59009 1.67034 1.07128 1.04266 1.21269 0.97222 0.91355 1.03374 1.19593 1.03887 0.97132 0.92075 1.20720 1.01872 0.93296 0.97895 1.20102 1.04426 0.95283 0.95270 1.18958 1.06087 0.87694 0.96650 1.19358 1.06950 0.95720 0.92145 1.21595 1.17430 0.93874 0.98101 1.22097 1.03067 0.99605 0.83044 1.40419 1.43358 1.08412 1.05692 1.20156 1.51081 0.87700 0.91283 0.87929 1.26498 0.94655 0.99170 1.00151 1.69990 1.40803 1.17071 1.23801 0.84663 0.78646 0.76604 0.76905 1.19146 1.19172 1.18256 1.20335 0.99853 0.91428 0.98271 0.93783 0.92364 0.92764 0.90765 0.91462 0.84583 0.84950 0.89939 0.90732 0.84427 0.87753 0.83607 0.82589 0.90588 0.85685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.80 71.98 0.71 -1.89 16 2 C -0.11 -1.94 5.58 30.59 0.17 -1.77 16 3 C 0.10 2.21 2.79 44.91 0.13 2.33 16 4 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 5 N -0.85 -20.16 8.57 -168.70 -1.45 -21.60 16 6 C -0.09 -2.17 4.99 29.85 0.15 -2.02 16 7 C -0.13 -4.06 4.73 -19.85 -0.09 -4.16 16 8 C -0.12 -4.19 9.67 22.31 0.22 -3.97 16 9 C -0.13 -5.72 9.95 22.36 0.22 -5.49 16 10 C 0.02 0.84 6.75 38.93 0.26 1.10 16 11 C -0.14 -6.32 6.37 -20.17 -0.13 -6.45 16 12 C -0.29 -13.64 11.09 23.57 0.26 -13.38 16 13 C 0.06 2.99 9.89 82.99 0.82 3.81 16 14 N -0.31 -17.41 2.92 -342.90 -1.00 -18.41 16 15 C -0.38 -20.57 9.93 84.00 0.83 -19.74 16 16 H 0.10 5.39 7.85 -2.91 -0.02 5.37 16 17 C 0.00 0.00 5.35 84.90 0.45 0.45 16 18 N -0.88 -47.35 10.85 21.65 0.23 -47.12 16 19 Si 1.01 39.56 29.57 68.60 2.03 41.58 16 20 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 21 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 22 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 23 C -0.08 -2.96 8.41 22.47 0.19 -2.77 16 24 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.05 1.12 7.75 -2.39 -0.02 1.10 16 27 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.34 6.99 9.00 -89.70 -0.81 6.19 16 30 H 0.34 9.54 7.32 -89.69 -0.66 8.89 16 31 H 0.08 1.70 8.08 -2.39 -0.02 1.68 16 32 H 0.07 1.58 8.08 -2.38 -0.02 1.56 16 33 H 0.14 3.94 8.06 -2.91 -0.02 3.91 16 34 H 0.10 4.43 8.06 -2.91 -0.02 4.41 16 35 H 0.15 6.00 8.06 -2.91 -0.02 5.98 16 36 H 0.16 8.50 6.35 -2.91 -0.02 8.48 16 37 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 38 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -60.71 314.19 3.60 -57.11 By element: Atomic # 1 Polarization: 42.78 SS G_CDS: -0.40 Total: 42.37 kcal Atomic # 6 Polarization: -58.13 SS G_CDS: 4.19 Total: -53.94 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -2.21 Total: -87.13 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.58 kcal Total: -60.71 3.60 -57.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229744536.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.290 kcal (2) G-P(sol) polarization free energy of solvation -60.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds