Wall clock time and date at job start Mon Mar 30 2020 07:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47309 * 2 1 4 4 H 1.08997 * 109.47347 * 305.00091 * 3 2 1 5 5 N 1.46898 * 109.46912 * 65.00459 * 3 2 1 6 6 C 1.53004 * 109.47243 * 184.99945 * 3 2 1 7 7 C 1.50699 * 109.47267 * 174.99833 * 6 3 2 8 8 C 1.38751 * 119.67446 * 90.00017 * 7 6 3 9 9 C 1.37781 * 120.36614 * 180.02562 * 8 7 6 10 10 C 1.39518 * 119.65475 * 359.97438 * 9 8 7 11 11 C 1.46667 * 133.97088 * 179.97438 * 10 9 8 12 12 C 1.34303 * 107.04746 * 180.02562 * 11 10 9 13 13 N 1.36997 * 109.93423 * 359.94968 * 12 11 10 14 14 C 1.37206 * 125.08945 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99572 * 158.45984 * 14 13 12 16 16 C 1.38847 * 120.00158 * 338.45911 * 14 13 12 17 17 N 1.31440 * 120.00226 * 160.82373 * 16 14 13 18 18 Si 1.86803 * 119.99998 * 340.82078 * 16 14 13 19 19 H 1.48508 * 109.46869 * 94.10049 * 18 16 14 20 20 H 1.48498 * 109.47451 * 214.09908 * 18 16 14 21 21 H 1.48500 * 109.47105 * 334.10158 * 18 16 14 22 22 C 1.38117 * 109.81903 * 0.06768 * 13 12 11 23 23 C 1.37899 * 119.68151 * 269.98405 * 7 6 3 24 24 H 1.08997 * 109.47133 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46523 * 299.99822 * 1 2 3 26 26 H 1.08994 * 109.47046 * 59.99623 * 1 2 3 27 27 H 1.09003 * 109.46996 * 239.99965 * 2 1 3 28 28 H 1.09001 * 109.47434 * 120.00434 * 2 1 3 29 29 H 1.00902 * 111.00345 * 59.99991 * 5 3 2 30 30 H 1.00898 * 110.99819 * 183.95257 * 5 3 2 31 31 H 1.09007 * 109.46867 * 55.00428 * 6 3 2 32 32 H 1.08997 * 109.47502 * 295.00397 * 6 3 2 33 33 H 1.07999 * 119.81588 * 0.02562 * 8 7 6 34 34 H 1.07998 * 120.17048 * 179.70918 * 9 8 7 35 35 H 1.07997 * 126.47187 * 0.07529 * 11 10 9 36 36 H 1.08002 * 125.02720 * 180.02562 * 12 11 10 37 37 H 0.97006 * 120.00217 * 180.02562 * 17 16 14 38 38 H 1.08002 * 120.03826 * 0.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 7 1.6515 2.0992 1.2553 6 6 3.5649 1.4443 -0.1257 7 6 4.0571 2.8633 -0.2493 8 6 4.3803 3.5803 0.8938 9 6 4.8311 4.8786 0.7975 10 6 4.9626 5.4723 -0.4582 11 6 5.3990 6.7946 -0.9188 12 6 5.3153 6.7921 -2.2592 13 7 4.8618 5.5756 -2.6966 14 6 4.6616 5.2344 -4.0104 15 1 4.6436 4.1945 -4.3014 16 6 4.4821 6.2259 -4.9656 17 7 4.6652 5.9533 -6.2383 18 14 3.9801 7.9474 -4.4420 19 1 5.1929 8.7893 -4.2817 20 1 3.0978 8.5423 -5.4778 21 1 3.2507 7.8789 -3.1503 22 6 4.6356 4.7444 -1.6170 23 6 4.1822 3.4364 -1.4973 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.0424 1.6178 2.0513 30 1 1.9205 3.0716 1.2529 31 1 3.8571 0.8800 -1.0114 32 1 4.0031 0.9835 0.7596 33 1 4.2778 3.1180 1.8645 34 1 5.0773 5.4354 1.6896 35 1 5.7265 7.6150 -0.2974 36 1 5.5691 7.6254 -2.8977 37 1 4.5402 6.6461 -6.9057 38 1 3.9278 2.8694 -2.3806 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229749069.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:32 Heat of formation + Delta-G solvation = 41.342470 kcal Electronic energy + Delta-G solvation = -18828.896113 eV Core-core repulsion = 16056.782848 eV Total energy + Delta-G solvation = -2772.113265 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.39941 -37.89756 -35.73142 -33.34699 -31.68043 -30.97070 -29.54094 -29.12910 -26.54253 -24.83487 -23.48140 -21.58602 -20.42985 -20.34131 -19.76676 -17.57086 -16.09588 -15.98685 -15.50703 -14.87755 -14.51716 -14.25479 -14.00773 -13.72217 -13.34071 -13.19304 -12.95973 -12.63948 -12.33037 -12.19095 -12.08913 -11.57698 -11.28671 -11.14777 -11.03919 -10.81751 -10.72321 -10.51430 -10.40954 -10.10933 -9.95442 -9.31028 -8.82674 -8.44074 -7.35112 -6.94093 -6.90660 -4.36645 1.91057 2.39811 2.88887 3.05623 3.14249 3.61098 3.82486 4.28243 4.55168 4.77307 4.82297 4.99076 5.19321 5.37762 5.41018 5.52289 5.60559 5.70901 5.80204 5.86666 5.96263 6.00386 6.05963 6.12007 6.23604 6.26827 6.37178 6.42017 6.48496 6.72539 6.79396 6.88334 7.19506 7.28132 7.33694 7.39221 7.57978 7.66087 7.79620 7.86893 8.17162 8.79172 9.09118 10.16994 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.022921 B = 0.005774 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.293827 B = 4847.840996 C = 5564.977485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.095 3.905 4 H 0.081 0.919 5 N -0.841 5.841 6 C -0.103 4.103 7 C -0.103 4.103 8 C -0.166 4.166 9 C -0.075 4.075 10 C -0.124 4.124 11 C -0.247 4.247 12 C 0.000 4.000 13 N -0.291 5.291 14 C -0.344 4.344 15 H 0.120 0.880 16 C 0.068 3.932 17 N -0.836 5.836 18 Si 0.889 3.111 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.248 1.248 22 C 0.063 3.937 23 C -0.093 4.093 24 H 0.043 0.957 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.331 0.669 30 H 0.348 0.652 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.130 0.870 36 H 0.148 0.852 37 H 0.285 0.715 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.229 -5.531 10.571 12.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.017 4.017 4 H 0.099 0.901 5 N -0.370 5.370 6 C -0.142 4.142 7 C -0.105 4.105 8 C -0.186 4.186 9 C -0.094 4.094 10 C -0.129 4.129 11 C -0.272 4.272 12 C -0.132 4.132 13 N 0.046 4.954 14 C -0.471 4.471 15 H 0.137 0.863 16 C -0.143 4.143 17 N -0.466 5.466 18 Si 0.715 3.285 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.172 1.172 22 C -0.049 4.049 23 C -0.113 4.113 24 H 0.062 0.938 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.143 0.857 30 H 0.162 0.838 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.147 0.853 36 H 0.165 0.835 37 H 0.096 0.904 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.046 -5.731 9.691 11.964 hybrid contribution 0.965 1.125 -0.088 1.485 sum -3.081 -4.606 9.604 11.088 Atomic orbital electron populations 1.21658 0.95475 1.00403 1.02553 1.21552 0.96572 0.95773 1.01399 1.21500 0.91980 0.94757 0.93488 0.90116 1.59002 1.66876 1.07577 1.03589 1.21282 0.96944 0.93867 1.02141 1.19108 1.03681 0.95247 0.92458 1.20359 1.06734 0.94970 0.96506 1.20235 0.99675 0.94463 0.95009 1.18970 1.07040 0.94611 0.92327 1.21157 1.15909 0.96993 0.93146 1.21551 1.06053 0.90370 0.95265 1.40392 1.41699 1.08487 1.04829 1.19441 1.51584 0.96892 0.79229 0.86271 1.25295 0.94432 0.99874 0.94714 1.69724 1.39921 1.36066 1.00841 0.86679 0.79740 0.82236 0.79813 1.19506 1.20985 1.17200 1.18186 1.06301 0.93754 0.86611 1.19753 1.02395 0.92541 0.96638 0.93823 0.91641 0.93127 0.91978 0.92462 0.85711 0.83834 0.91345 0.91886 0.87898 0.87514 0.85260 0.83490 0.90410 0.87254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.80 37.16 0.36 -1.19 16 2 C -0.11 -1.26 5.58 -26.73 -0.15 -1.41 16 3 C 0.09 1.22 2.79 -67.71 -0.19 1.03 16 4 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 5 N -0.84 -10.31 8.57 -4.67 -0.04 -10.35 16 6 C -0.10 -1.41 4.98 -27.88 -0.14 -1.55 16 7 C -0.10 -1.77 4.73 -104.56 -0.49 -2.26 16 8 C -0.17 -2.73 8.34 -39.56 -0.33 -3.06 16 9 C -0.08 -1.37 10.10 -39.27 -0.40 -1.77 16 10 C -0.12 -2.70 6.37 -105.09 -0.67 -3.37 16 11 C -0.25 -5.32 11.09 -37.57 -0.42 -5.74 16 12 C 0.00 0.01 8.32 -16.63 -0.14 -0.13 16 13 N -0.29 -7.36 2.76 -59.74 -0.16 -7.53 16 14 C -0.34 -9.24 10.35 -14.92 -0.15 -9.40 16 15 H 0.12 3.33 8.06 -52.49 -0.42 2.91 16 16 C 0.07 1.79 5.44 -17.49 -0.10 1.69 16 17 N -0.84 -22.43 13.96 55.49 0.77 -21.66 16 18 Si 0.89 20.06 24.67 -169.99 -4.19 15.87 16 19 H -0.27 -5.73 6.67 56.52 0.38 -5.35 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.25 -5.77 6.71 56.52 0.38 -5.39 16 22 C 0.06 1.49 6.75 -83.84 -0.57 0.92 16 23 C -0.09 -1.93 9.58 -39.44 -0.38 -2.31 16 24 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.74 7.75 -51.93 -0.40 0.34 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.33 3.50 9.00 -39.29 -0.35 3.15 16 30 H 0.35 4.67 7.31 -39.29 -0.29 4.39 16 31 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 32 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.10 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.13 2.37 8.06 -52.49 -0.42 1.94 16 36 H 0.15 3.30 4.39 -52.49 -0.23 3.06 16 37 H 0.29 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.11 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 308.58 15.07 4.65 4.65 Total: -1.00 -27.20 308.58 -8.25 -35.44 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -5.52 Total: 12.13 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: -3.75 Total: -28.56 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.57 Total: -39.54 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.19 Total: 15.87 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.20 -8.25 -35.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229749069.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.787 kcal (2) G-P(sol) polarization free energy of solvation -27.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds