Wall clock time and date at job start Mon Mar 30 2020 07:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47309 * 2 1 4 4 H 1.08997 * 109.47347 * 305.00091 * 3 2 1 5 5 N 1.46898 * 109.46912 * 65.00459 * 3 2 1 6 6 C 1.53004 * 109.47243 * 184.99945 * 3 2 1 7 7 C 1.50699 * 109.47267 * 174.99833 * 6 3 2 8 8 C 1.38751 * 119.67446 * 90.00017 * 7 6 3 9 9 C 1.37781 * 120.36614 * 180.02562 * 8 7 6 10 10 C 1.39518 * 119.65475 * 359.97438 * 9 8 7 11 11 C 1.46667 * 133.97088 * 179.97438 * 10 9 8 12 12 C 1.34303 * 107.04746 * 180.02562 * 11 10 9 13 13 N 1.36997 * 109.93423 * 359.94968 * 12 11 10 14 14 C 1.37206 * 125.08945 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99572 * 158.45984 * 14 13 12 16 16 C 1.38847 * 120.00158 * 338.45911 * 14 13 12 17 17 N 1.31440 * 120.00226 * 160.82373 * 16 14 13 18 18 Si 1.86803 * 119.99998 * 340.82078 * 16 14 13 19 19 H 1.48508 * 109.46869 * 94.10049 * 18 16 14 20 20 H 1.48498 * 109.47451 * 214.09908 * 18 16 14 21 21 H 1.48500 * 109.47105 * 334.10158 * 18 16 14 22 22 C 1.38117 * 109.81903 * 0.06768 * 13 12 11 23 23 C 1.37899 * 119.68151 * 269.98405 * 7 6 3 24 24 H 1.08997 * 109.47133 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46523 * 299.99822 * 1 2 3 26 26 H 1.08994 * 109.47046 * 59.99623 * 1 2 3 27 27 H 1.09003 * 109.46996 * 239.99965 * 2 1 3 28 28 H 1.09001 * 109.47434 * 120.00434 * 2 1 3 29 29 H 1.00902 * 111.00345 * 59.99991 * 5 3 2 30 30 H 1.00898 * 110.99819 * 183.95257 * 5 3 2 31 31 H 1.09007 * 109.46867 * 55.00428 * 6 3 2 32 32 H 1.08997 * 109.47502 * 295.00397 * 6 3 2 33 33 H 1.07999 * 119.81588 * 0.02562 * 8 7 6 34 34 H 1.07998 * 120.17048 * 179.70918 * 9 8 7 35 35 H 1.07997 * 126.47187 * 0.07529 * 11 10 9 36 36 H 1.08002 * 125.02720 * 180.02562 * 12 11 10 37 37 H 0.97006 * 120.00217 * 180.02562 * 17 16 14 38 38 H 1.08002 * 120.03826 * 0.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 7 1.6515 2.0992 1.2553 6 6 3.5649 1.4443 -0.1257 7 6 4.0571 2.8633 -0.2493 8 6 4.3803 3.5803 0.8938 9 6 4.8311 4.8786 0.7975 10 6 4.9626 5.4723 -0.4582 11 6 5.3990 6.7946 -0.9188 12 6 5.3153 6.7921 -2.2592 13 7 4.8618 5.5756 -2.6966 14 6 4.6616 5.2344 -4.0104 15 1 4.6436 4.1945 -4.3014 16 6 4.4821 6.2259 -4.9656 17 7 4.6652 5.9533 -6.2383 18 14 3.9801 7.9474 -4.4420 19 1 5.1929 8.7893 -4.2817 20 1 3.0978 8.5423 -5.4778 21 1 3.2507 7.8789 -3.1503 22 6 4.6356 4.7444 -1.6170 23 6 4.1822 3.4364 -1.4973 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.0424 1.6178 2.0513 30 1 1.9205 3.0716 1.2529 31 1 3.8571 0.8800 -1.0114 32 1 4.0031 0.9835 0.7596 33 1 4.2778 3.1180 1.8645 34 1 5.0773 5.4354 1.6896 35 1 5.7265 7.6150 -0.2974 36 1 5.5691 7.6254 -2.8977 37 1 4.5402 6.6461 -6.9057 38 1 3.9278 2.8694 -2.3806 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229749069.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:32 Heat of formation + Delta-G solvation = 25.700245 kcal Electronic energy + Delta-G solvation = -18829.574411 eV Core-core repulsion = 16056.782848 eV Total energy + Delta-G solvation = -2772.791563 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.06995 -39.19881 -37.05911 -35.18882 -33.22387 -32.09626 -30.98152 -30.67435 -27.85274 -26.68502 -24.66097 -23.08851 -22.09886 -21.59528 -21.14272 -19.34432 -17.87796 -17.18338 -17.01328 -16.24372 -16.09969 -15.70408 -15.33919 -15.08551 -14.81896 -14.65607 -14.38247 -14.02328 -13.93311 -13.61485 -13.30198 -13.01333 -12.85142 -12.56997 -12.35377 -12.26853 -12.00191 -11.88654 -11.72496 -11.60386 -11.35318 -11.12326 -10.45378 -9.51511 -9.00543 -8.86440 -8.57564 -6.35928 0.33980 0.84600 1.09922 1.24589 1.34839 1.85859 1.99028 2.56209 2.78513 3.15659 3.79039 3.82851 3.94107 4.08569 4.19427 4.28564 4.41022 4.44016 4.49374 4.62765 4.71394 4.79773 4.83412 4.91924 5.02672 5.11316 5.15059 5.19356 5.21374 5.31281 5.40075 5.44026 5.54965 5.70959 5.76420 5.85024 6.14973 6.17535 6.34928 6.40592 6.74629 6.92496 7.24188 8.26648 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.022921 B = 0.005774 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.293827 B = 4847.840996 C = 5564.977485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C 0.101 3.899 4 H 0.050 0.950 5 N -0.839 5.839 6 C -0.100 4.100 7 C -0.077 4.077 8 C -0.154 4.154 9 C -0.070 4.070 10 C -0.146 4.146 11 C -0.234 4.234 12 C -0.024 4.024 13 N -0.322 5.322 14 C -0.365 4.365 15 H 0.082 0.918 16 C 0.028 3.972 17 N -0.879 5.879 18 Si 0.950 3.050 19 H -0.245 1.245 20 H -0.275 1.275 21 H -0.260 1.260 22 C 0.036 3.964 23 C -0.134 4.134 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.036 0.964 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.346 0.654 30 H 0.342 0.658 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.166 0.834 36 H 0.153 0.847 37 H 0.292 0.708 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.350 -5.597 14.440 15.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.149 4.149 3 C -0.011 4.011 4 H 0.069 0.931 5 N -0.370 5.370 6 C -0.140 4.140 7 C -0.079 4.079 8 C -0.173 4.173 9 C -0.089 4.089 10 C -0.151 4.151 11 C -0.260 4.260 12 C -0.155 4.155 13 N 0.012 4.988 14 C -0.492 4.492 15 H 0.100 0.900 16 C -0.179 4.179 17 N -0.511 5.511 18 Si 0.773 3.227 19 H -0.170 1.170 20 H -0.201 1.201 21 H -0.185 1.185 22 C -0.074 4.074 23 C -0.155 4.155 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.160 0.840 30 H 0.155 0.845 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.165 0.835 34 H 0.161 0.839 35 H 0.184 0.816 36 H 0.170 0.830 37 H 0.102 0.898 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.155 -5.809 13.576 15.340 hybrid contribution 0.992 0.938 -1.029 1.709 sum -3.163 -4.871 12.547 13.826 Atomic orbital electron populations 1.21634 0.95394 1.01179 1.01696 1.21525 0.96583 0.94342 1.02421 1.21366 0.90990 0.95803 0.92947 0.93149 1.58943 1.67066 1.07243 1.03712 1.21370 0.97656 0.91574 1.03371 1.19574 1.00316 0.96693 0.91323 1.20845 1.04335 0.94299 0.97840 1.20700 0.98255 0.95192 0.94738 1.19412 1.07714 0.94797 0.93155 1.21654 1.13877 0.97812 0.92641 1.21882 1.07007 0.90161 0.96450 1.40396 1.44362 1.09731 1.04315 1.19193 1.53325 0.95672 0.81024 0.89997 1.25978 0.94081 1.03406 0.94471 1.69786 1.41859 1.37650 1.01819 0.85754 0.80039 0.78105 0.78761 1.17048 1.20083 1.18454 1.18816 1.06704 0.94769 0.87139 1.19909 1.05321 0.92386 0.97861 0.92259 0.92044 0.94429 0.91774 0.90586 0.84036 0.84486 0.91669 0.88986 0.83474 0.83863 0.81646 0.83024 0.89774 0.89094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.80 71.98 0.71 -2.10 16 2 C -0.11 -2.16 5.58 30.59 0.17 -1.99 16 3 C 0.10 2.41 2.79 44.92 0.13 2.54 16 4 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 5 N -0.84 -17.97 8.57 -168.68 -1.45 -19.41 16 6 C -0.10 -2.51 4.98 29.85 0.15 -2.36 16 7 C -0.08 -2.52 4.73 -19.82 -0.09 -2.61 16 8 C -0.15 -4.43 8.34 22.28 0.19 -4.24 16 9 C -0.07 -2.30 10.10 22.47 0.23 -2.07 16 10 C -0.15 -6.12 6.37 -20.17 -0.13 -6.25 16 11 C -0.23 -9.71 11.09 23.57 0.26 -9.45 16 12 C -0.02 -1.15 8.32 82.99 0.69 -0.46 16 13 N -0.32 -17.01 2.76 -342.91 -0.95 -17.96 16 14 C -0.37 -21.06 10.35 84.00 0.87 -20.19 16 15 H 0.08 5.10 8.06 -2.91 -0.02 5.08 16 16 C 0.03 1.53 5.44 84.90 0.46 1.99 16 17 N -0.88 -49.73 13.96 21.64 0.30 -49.43 16 18 Si 0.95 42.49 24.67 68.60 1.69 44.18 16 19 H -0.25 -9.94 6.67 99.48 0.66 -9.27 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.26 -12.01 6.71 99.48 0.67 -11.34 16 22 C 0.04 1.76 6.75 38.92 0.26 2.02 16 23 C -0.13 -5.76 9.58 22.36 0.21 -5.55 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.06 1.27 7.75 -2.39 -0.02 1.25 16 26 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.35 5.74 9.00 -89.69 -0.81 4.94 16 30 H 0.34 8.10 7.31 -89.70 -0.66 7.44 16 31 H 0.06 1.71 8.08 -2.38 -0.02 1.69 16 32 H 0.09 1.83 8.08 -2.39 -0.02 1.81 16 33 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 34 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 35 H 0.17 5.45 8.06 -2.91 -0.02 5.43 16 36 H 0.15 6.76 4.39 -2.91 -0.01 6.75 16 37 H 0.29 14.97 8.31 -92.70 -0.77 14.20 16 38 H 0.09 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -63.18 308.58 3.22 -59.96 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: -0.48 Total: 33.40 kcal Atomic # 6 Polarization: -54.83 SS G_CDS: 4.10 Total: -50.73 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -2.09 Total: -86.80 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.69 Total: 44.18 kcal Total: -63.18 3.22 -59.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229749069.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.656 kcal (2) G-P(sol) polarization free energy of solvation -63.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds