Wall clock time and date at job start Mon Mar 30 2020 07:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31606 * 1 3 3 Si 1.86797 * 120.00394 * 2 1 4 4 H 1.48505 * 109.47012 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47282 * 119.99746 * 3 2 1 6 6 H 1.48505 * 109.47556 * 240.00143 * 3 2 1 7 7 C 1.38777 * 120.00012 * 179.72597 * 2 1 3 8 8 H 1.08004 * 120.00480 * 179.97438 * 7 2 1 9 9 N 1.36829 * 119.99679 * 359.97438 * 7 2 1 10 10 C 1.39402 * 119.99951 * 185.13126 * 9 7 2 11 11 C 1.39286 * 120.10428 * 84.19003 * 10 9 7 12 12 F 1.35097 * 120.06083 * 359.95895 * 11 10 9 13 13 C 1.38233 * 119.87768 * 179.97438 * 11 10 9 14 14 C 1.38350 * 120.08126 * 0.02562 * 13 11 10 15 15 C 1.38297 * 120.20563 * 359.96948 * 14 13 11 16 16 C 1.38195 * 120.12202 * 359.79660 * 15 14 13 17 17 Br 1.89101 * 120.03943 * 180.25632 * 16 15 14 18 18 H 0.96993 * 119.99972 * 180.02562 * 1 2 3 19 19 H 0.96996 * 119.99772 * 5.13025 * 9 7 2 20 20 H 1.07996 * 119.95978 * 179.97438 * 13 11 10 21 21 H 1.07999 * 119.89701 * 180.02562 * 14 13 11 22 22 H 1.07998 * 119.93403 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1039 1.6963 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0099 -1.2018 0.0057 8 1 3.0900 -1.2019 0.0053 9 7 1.3257 -2.3867 0.0119 10 6 2.0185 -3.5911 0.1257 11 6 2.3788 -4.0739 1.3815 12 9 2.0582 -3.3754 2.4926 13 6 3.0653 -5.2689 1.4889 14 6 3.3946 -5.9841 0.3513 15 6 3.0385 -5.5079 -0.8973 16 6 2.3478 -4.3166 -1.0142 17 35 1.8558 -3.6713 -2.7222 18 1 -0.4850 -0.8400 0.0004 19 1 0.3587 -2.3887 -0.0628 20 1 3.3456 -5.6443 2.4619 21 1 3.9306 -6.9176 0.4387 22 1 3.2974 -6.0700 -1.7824 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232125575.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:38 Heat of formation + Delta-G solvation = -4.575513 kcal Electronic energy + Delta-G solvation = -11949.497086 eV Core-core repulsion = 9465.686977 eV Total energy + Delta-G solvation = -2483.810110 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 258.970 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.14943 -38.63405 -35.06198 -31.87678 -31.14763 -28.89517 -27.76222 -23.93321 -21.96240 -21.49988 -17.69870 -17.04884 -16.23803 -15.95323 -14.99642 -14.51466 -13.94022 -13.62959 -13.33644 -12.84037 -12.20555 -11.78999 -11.28970 -10.81572 -10.70983 -10.28492 -10.06511 -9.58075 -9.49465 -9.26383 -8.24957 -8.12955 -7.42379 -6.29365 -3.34594 1.40050 1.58800 2.22932 3.46971 3.50231 3.67089 3.87023 4.53195 4.74316 5.08463 5.16552 5.34735 5.50793 5.59507 5.95371 6.31563 6.39023 6.51890 6.65045 7.14940 7.72224 8.54619 8.99889 9.80821 9.88153 11.16457 Molecular weight = 258.97amu Principal moments of inertia in cm(-1) A = 0.021351 B = 0.011571 C = 0.008223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.122916 B = 2419.322919 C = 3404.400216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.026 4.026 3 Si 1.081 2.919 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.335 4.335 8 H 0.070 0.930 9 N -0.676 5.676 10 C 0.200 3.800 11 C 0.079 3.921 12 F -0.130 7.130 13 C -0.143 4.143 14 C -0.121 4.121 15 C -0.103 4.103 16 C -0.092 4.092 17 Br -0.042 7.042 18 H 0.258 0.742 19 H 0.383 0.617 20 H 0.129 0.871 21 H 0.130 0.870 22 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.478 -11.520 -2.917 13.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.226 4.226 3 Si 0.910 3.090 4 H -0.207 1.207 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.463 4.463 8 H 0.088 0.912 9 N -0.313 5.313 10 C 0.097 3.903 11 C 0.055 3.945 12 F -0.108 7.108 13 C -0.163 4.163 14 C -0.140 4.140 15 C -0.124 4.124 16 C -0.176 4.176 17 Br 0.044 6.956 18 H 0.069 0.931 19 H 0.220 0.780 20 H 0.147 0.853 21 H 0.148 0.852 22 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.261 -9.446 -3.516 11.369 hybrid contribution 0.019 -1.785 0.651 1.901 sum 5.281 -11.231 -2.865 12.737 Atomic orbital electron populations 1.70880 1.06114 1.28738 1.51028 1.25911 0.96869 1.01122 0.98687 0.83246 0.74381 0.75112 0.76222 1.20743 1.21874 1.21761 1.19931 0.92087 0.84213 1.50118 0.91248 1.39857 1.05773 0.99710 1.86006 1.17398 0.94626 0.88777 0.89461 1.18604 1.01270 0.91234 0.83365 1.91480 1.90792 1.78512 1.50013 1.21114 1.00553 0.94692 0.99973 1.20720 1.01928 1.00185 0.91190 1.20977 0.98494 0.94760 0.98138 1.22872 1.04199 0.98882 0.91597 1.96613 1.91760 1.89172 1.18051 0.93067 0.77959 0.85266 0.85231 0.85442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.91 13.70 55.49 0.76 -27.15 14 2 C -0.03 -0.75 5.50 -17.45 -0.10 -0.85 14 3 Si 1.08 25.63 29.92 -169.99 -5.09 20.54 14 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 14 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 14 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 14 7 C -0.34 -9.31 9.91 -15.12 -0.15 -9.46 14 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 14 9 N -0.68 -17.13 4.36 -9.54 -0.04 -17.17 14 10 C 0.20 4.39 5.87 -83.72 -0.49 3.90 14 11 C 0.08 1.60 7.32 -39.19 -0.29 1.31 14 12 F -0.13 -2.88 17.08 2.25 0.04 -2.84 14 13 C -0.14 -2.25 10.02 -39.54 -0.40 -2.65 14 14 C -0.12 -1.66 10.04 -39.52 -0.40 -2.06 14 15 C -0.10 -1.58 9.78 -39.58 -0.39 -1.96 14 16 C -0.09 -1.76 6.25 -39.29 -0.25 -2.00 14 17 Br -0.04 -0.78 33.09 -68.01 -2.25 -3.03 14 18 H 0.26 7.68 6.78 -40.82 -0.28 7.40 14 19 H 0.38 9.97 6.87 -40.82 -0.28 9.69 14 20 H 0.13 1.67 8.06 -52.49 -0.42 1.25 14 21 H 0.13 1.30 8.06 -52.49 -0.42 0.88 14 22 H 0.13 1.61 8.06 -52.49 -0.42 1.19 14 LS Contribution 229.79 15.07 3.46 3.46 Total: -1.00 -30.21 229.79 -6.60 -36.81 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -1.03 Total: 3.15 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -2.45 Total: -13.77 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.72 Total: -44.32 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.04 Total: -2.84 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.09 Total: 20.54 kcal Atomic # 35 Polarization: -0.78 SS G_CDS: -2.25 Total: -3.03 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -30.21 -6.60 -36.81 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232125575.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.231 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds