Wall clock time and date at job start Mon Mar 30 2020 07:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31606 * 1 3 3 Si 1.86797 * 120.00394 * 2 1 4 4 H 1.48505 * 109.47012 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47282 * 119.99746 * 3 2 1 6 6 H 1.48505 * 109.47556 * 240.00143 * 3 2 1 7 7 C 1.38777 * 120.00012 * 179.72597 * 2 1 3 8 8 H 1.08004 * 120.00480 * 179.97438 * 7 2 1 9 9 N 1.36829 * 119.99679 * 359.97438 * 7 2 1 10 10 C 1.39402 * 119.99951 * 185.13126 * 9 7 2 11 11 C 1.39286 * 120.10428 * 84.19003 * 10 9 7 12 12 F 1.35097 * 120.06083 * 359.95895 * 11 10 9 13 13 C 1.38233 * 119.87768 * 179.97438 * 11 10 9 14 14 C 1.38350 * 120.08126 * 0.02562 * 13 11 10 15 15 C 1.38297 * 120.20563 * 359.96948 * 14 13 11 16 16 C 1.38195 * 120.12202 * 359.79660 * 15 14 13 17 17 Br 1.89101 * 120.03943 * 180.25632 * 16 15 14 18 18 H 0.96993 * 119.99972 * 180.02562 * 1 2 3 19 19 H 0.96996 * 119.99772 * 5.13025 * 9 7 2 20 20 H 1.07996 * 119.95978 * 179.97438 * 13 11 10 21 21 H 1.07999 * 119.89701 * 180.02562 * 14 13 11 22 22 H 1.07998 * 119.93403 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1039 1.6963 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0099 -1.2018 0.0057 8 1 3.0900 -1.2019 0.0053 9 7 1.3257 -2.3867 0.0119 10 6 2.0185 -3.5911 0.1257 11 6 2.3788 -4.0739 1.3815 12 9 2.0582 -3.3754 2.4926 13 6 3.0653 -5.2689 1.4889 14 6 3.3946 -5.9841 0.3513 15 6 3.0385 -5.5079 -0.8973 16 6 2.3478 -4.3166 -1.0142 17 35 1.8558 -3.6713 -2.7222 18 1 -0.4850 -0.8400 0.0004 19 1 0.3587 -2.3887 -0.0628 20 1 3.3456 -5.6443 2.4619 21 1 3.9306 -6.9176 0.4387 22 1 3.2974 -6.0700 -1.7824 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232125575.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:38 Heat of formation + Delta-G solvation = -23.126063 kcal Electronic energy + Delta-G solvation = -11950.301499 eV Core-core repulsion = 9465.686977 eV Total energy + Delta-G solvation = -2484.614522 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 258.970 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.76254 -40.08392 -36.85724 -33.58060 -32.75133 -30.32374 -29.38505 -25.93843 -23.37088 -23.00173 -19.68112 -18.61639 -17.80716 -17.43940 -16.66007 -16.16779 -15.70349 -15.27267 -14.84001 -14.34225 -13.66022 -13.26501 -13.01366 -12.66672 -12.27547 -11.91910 -11.68838 -11.51482 -11.23610 -11.00636 -9.68945 -9.63023 -9.40012 -8.47598 -5.50281 0.02813 0.19094 0.77776 1.55259 1.64953 1.81315 2.49715 2.65629 3.27220 3.34618 3.52986 3.92278 4.20760 4.28820 4.51127 4.92709 5.15198 5.20921 5.25064 5.50467 5.85031 6.37606 6.97283 7.76843 7.90159 9.00889 Molecular weight = 258.97amu Principal moments of inertia in cm(-1) A = 0.021351 B = 0.011571 C = 0.008223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.122916 B = 2419.322919 C = 3404.400216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.083 4.083 3 Si 1.124 2.876 4 H -0.288 1.288 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.327 4.327 8 H 0.060 0.940 9 N -0.692 5.692 10 C 0.157 3.843 11 C 0.048 3.952 12 F -0.151 7.151 13 C -0.129 4.129 14 C -0.089 4.089 15 C -0.094 4.094 16 C -0.104 4.104 17 Br -0.048 7.048 18 H 0.245 0.755 19 H 0.371 0.629 20 H 0.165 0.835 21 H 0.187 0.813 22 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.707 -13.992 -2.930 16.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.275 4.275 3 Si 0.948 3.052 4 H -0.214 1.214 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.457 4.457 8 H 0.078 0.922 9 N -0.331 5.331 10 C 0.057 3.943 11 C 0.025 3.975 12 F -0.130 7.130 13 C -0.149 4.149 14 C -0.107 4.107 15 C -0.114 4.114 16 C -0.187 4.187 17 Br 0.037 6.963 18 H 0.056 0.944 19 H 0.207 0.793 20 H 0.182 0.818 21 H 0.204 0.796 22 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.543 -11.999 -3.528 14.605 hybrid contribution -0.550 -1.332 0.636 1.575 sum 6.993 -13.331 -2.891 15.329 Atomic orbital electron populations 1.70980 1.07084 1.27981 1.54659 1.27174 0.96962 1.04334 0.99079 0.82702 0.73596 0.71646 0.77264 1.21383 1.20485 1.20040 1.20010 0.91637 0.85528 1.48500 0.92194 1.39720 1.05236 1.00461 1.87637 1.17796 0.96618 0.88859 0.91023 1.18986 1.03056 0.93197 0.82250 1.91420 1.91321 1.79411 1.50867 1.21559 0.98325 0.92357 1.02616 1.21407 0.99031 1.00923 0.89348 1.21473 0.96373 0.93078 1.00491 1.22958 1.05285 0.99753 0.90663 1.96599 1.91991 1.89679 1.17999 0.94419 0.79294 0.81779 0.79558 0.81946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.32 13.70 21.64 0.30 -60.02 14 2 C -0.08 -4.85 5.50 84.86 0.47 -4.38 14 3 Si 1.12 52.63 29.92 68.60 2.05 54.68 14 4 H -0.29 -13.64 7.11 99.48 0.71 -12.93 14 5 H -0.28 -12.28 7.11 99.48 0.71 -11.58 14 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 14 7 C -0.33 -18.72 9.91 84.04 0.83 -17.89 14 8 H 0.06 3.45 7.83 -2.91 -0.02 3.43 14 9 N -0.69 -36.29 4.36 -184.08 -0.80 -37.09 14 10 C 0.16 6.87 5.87 38.39 0.23 7.10 14 11 C 0.05 1.89 7.32 22.52 0.16 2.06 14 12 F -0.15 -6.82 17.08 44.97 0.77 -6.06 14 13 C -0.13 -3.51 10.02 22.30 0.22 -3.29 14 14 C -0.09 -1.89 10.04 22.31 0.22 -1.67 14 15 C -0.09 -2.45 9.78 22.27 0.22 -2.23 14 16 C -0.10 -3.80 6.25 22.46 0.14 -3.66 14 17 Br -0.05 -1.78 33.09 -20.37 -0.67 -2.45 14 18 H 0.25 15.43 6.78 -92.71 -0.63 14.80 14 19 H 0.37 20.47 6.87 -92.71 -0.64 19.83 14 20 H 0.16 3.35 8.06 -2.91 -0.02 3.32 14 21 H 0.19 2.07 8.06 -2.91 -0.02 2.05 14 22 H 0.16 3.16 8.06 -2.91 -0.02 3.14 14 Total: -1.00 -69.00 229.79 4.90 -64.10 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.76 Total: 10.81 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: 2.49 Total: -23.97 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -0.51 Total: -97.12 kcal Atomic # 9 Polarization: -6.82 SS G_CDS: 0.77 Total: -6.06 kcal Atomic # 14 Polarization: 52.63 SS G_CDS: 2.05 Total: 54.68 kcal Atomic # 35 Polarization: -1.78 SS G_CDS: -0.67 Total: -2.45 kcal Total: -69.00 4.90 -64.10 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232125575.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.977 kcal (2) G-P(sol) polarization free energy of solvation -69.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds