Wall clock time and date at job start Mon Mar 30 2020 07:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31595 * 1 3 3 Si 1.86805 * 120.00097 * 2 1 4 4 H 1.48498 * 109.46909 * 270.00052 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.99962 * 3 2 1 6 6 H 1.48494 * 109.47142 * 149.99887 * 3 2 1 7 7 C 1.38785 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00281 * 179.97438 * 7 2 1 9 9 N 1.36850 * 120.00034 * 359.97438 * 7 2 1 10 10 C 1.39315 * 120.00151 * 180.02562 * 9 7 2 11 11 C 1.39042 * 120.07842 * 359.44997 * 10 9 7 12 12 C 1.38256 * 119.89463 * 179.72293 * 11 10 9 13 13 F 1.35100 * 119.97245 * 180.27382 * 12 11 10 14 14 C 1.38583 * 120.05445 * 0.55632 * 12 11 10 15 15 C 1.38269 * 120.16018 * 359.71816 * 14 12 11 16 16 C 1.38151 * 120.10603 * 0.02562 * 15 14 12 17 17 Br 1.89096 * 120.03020 * 179.97438 * 16 15 14 18 18 H 0.97000 * 120.00377 * 359.97438 * 1 2 3 19 19 H 0.96996 * 119.99582 * 359.72578 * 9 7 2 20 20 H 1.08003 * 120.05490 * 359.97438 * 11 10 9 21 21 H 1.08003 * 119.91726 * 179.70448 * 14 12 11 22 22 H 1.07998 * 119.94715 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0464 -1.4001 5 1 1.4474 2.6526 0.7000 6 1 3.5475 1.4402 0.7000 7 6 2.0099 -1.2019 -0.0005 8 1 3.0899 -1.2019 -0.0010 9 7 1.3257 -2.3871 -0.0005 10 6 2.0223 -3.5936 -0.0005 11 6 3.4126 -3.5955 -0.0121 12 6 4.1001 -4.7950 -0.0062 13 9 5.4511 -4.7987 -0.0119 14 6 3.4046 -5.9936 -0.0006 15 6 2.0219 -5.9944 0.0052 16 6 1.3282 -4.7996 0.0047 17 35 -0.5627 -4.8032 0.0119 18 1 -0.4851 0.8400 0.0004 19 1 0.3557 -2.3870 0.0039 20 1 3.9548 -2.6614 -0.0215 21 1 3.9438 -6.9294 -0.0008 22 1 1.4833 -6.9305 0.0092 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232246475.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:02 Heat of formation + Delta-G solvation = -38.005178 kcal Electronic energy + Delta-G solvation = -11713.867089 eV Core-core repulsion = 9228.607360 eV Total energy + Delta-G solvation = -2485.259729 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 258.970 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.77935 -40.08891 -36.86779 -33.90246 -32.73565 -30.40399 -29.29905 -26.71247 -23.41431 -22.74618 -19.79559 -18.96863 -17.18681 -16.71576 -16.64235 -16.45978 -15.83888 -15.45213 -14.62222 -14.37234 -14.03522 -13.48855 -13.04259 -12.70753 -12.51515 -12.16054 -12.11722 -11.84750 -11.43688 -11.01932 -10.70552 -9.50702 -8.71996 -8.58131 -5.86090 0.30171 0.67282 0.97322 1.40666 1.46380 1.53209 2.21678 2.65299 3.13055 3.16807 3.63496 4.00091 4.35218 4.58820 4.79846 5.12569 5.20613 5.22424 5.46069 5.46874 5.71158 6.14861 6.70197 7.28955 7.45979 8.58694 Molecular weight = 258.97amu Principal moments of inertia in cm(-1) A = 0.019054 B = 0.010438 C = 0.006760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.187197 B = 2681.864982 C = 4141.203309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.020 4.020 3 Si 1.001 2.999 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.332 4.332 8 H 0.108 0.892 9 N -0.560 5.560 10 C 0.225 3.775 11 C -0.270 4.270 12 C 0.160 3.840 13 F -0.147 7.147 14 C -0.262 4.262 15 C 0.007 3.993 16 C -0.235 4.235 17 Br -0.068 7.068 18 H 0.280 0.720 19 H 0.402 0.598 20 H 0.124 0.876 21 H 0.155 0.845 22 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.241 -8.552 0.037 8.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.221 4.221 3 Si 0.823 3.177 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.462 4.462 8 H 0.126 0.874 9 N -0.162 5.162 10 C 0.100 3.900 11 C -0.296 4.296 12 C 0.139 3.861 13 F -0.125 7.125 14 C -0.285 4.285 15 C -0.014 4.014 16 C -0.321 4.321 17 Br 0.016 6.984 18 H 0.089 0.911 19 H 0.239 0.761 20 H 0.141 0.859 21 H 0.172 0.828 22 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.430 -8.043 0.041 8.055 hybrid contribution 0.357 1.034 -0.010 1.094 sum 0.786 -7.010 0.031 7.054 Atomic orbital electron populations 1.69799 1.07436 1.29752 1.48416 1.26255 0.96525 1.03130 0.96160 0.84793 0.78083 0.76043 0.78758 1.19575 1.20240 1.18374 1.20111 0.93650 0.83371 1.49021 0.87420 1.41392 1.08639 1.02337 1.63857 1.17430 0.91126 0.85716 0.95693 1.20284 0.92466 0.97666 1.19206 1.17542 0.75887 0.94492 0.98176 1.91423 1.29812 1.97557 1.93729 1.20676 0.93918 0.96599 1.17335 1.20718 0.93086 0.95865 0.91697 1.21067 0.88929 0.95006 1.27093 1.96472 1.04675 1.98852 1.98409 0.91063 0.76076 0.85853 0.82762 0.82507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.13 13.05 21.64 0.28 -48.84 14 2 C -0.02 -1.01 5.50 84.86 0.47 -0.54 14 3 Si 1.00 39.97 29.55 68.60 2.03 41.99 14 4 H -0.27 -10.54 7.11 99.48 0.71 -9.83 14 5 H -0.28 -10.86 7.11 99.48 0.71 -10.15 14 6 H -0.26 -9.95 7.11 99.48 0.71 -9.24 14 7 C -0.33 -17.14 9.56 84.04 0.80 -16.34 14 8 H 0.11 5.31 5.68 -2.91 -0.02 5.30 14 9 N -0.56 -28.10 5.38 -184.25 -0.99 -29.09 14 10 C 0.23 10.12 6.61 38.37 0.25 10.37 14 11 C -0.27 -11.49 9.28 22.47 0.21 -11.28 14 12 C 0.16 5.90 7.30 22.36 0.16 6.07 14 13 F -0.15 -5.17 17.27 44.97 0.78 -4.39 14 14 C -0.26 -8.30 10.02 22.36 0.22 -8.07 14 15 C 0.01 0.22 9.78 22.26 0.22 0.43 14 16 C -0.24 -9.17 6.25 22.47 0.14 -9.03 14 17 Br -0.07 -2.46 32.12 -20.37 -0.65 -3.12 14 18 H 0.28 14.05 8.31 -92.71 -0.77 13.28 14 19 H 0.40 20.68 6.28 -92.71 -0.58 20.10 14 20 H 0.12 5.38 5.96 -2.91 -0.02 5.36 14 21 H 0.15 3.85 8.06 -2.91 -0.02 3.82 14 22 H 0.16 3.93 8.06 -2.91 -0.02 3.91 14 Total: -1.00 -53.91 225.33 4.60 -49.31 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.69 Total: 22.54 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: 2.48 Total: -28.39 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -0.71 Total: -77.94 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.78 Total: -4.39 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 41.99 kcal Atomic # 35 Polarization: -2.46 SS G_CDS: -0.65 Total: -3.12 kcal Total: -53.91 4.60 -49.31 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232246475.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.301 kcal (2) G-P(sol) polarization free energy of solvation -53.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds