Wall clock time and date at job start Mon Mar 30 2020 08:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38340 * 120.00477 * 2 1 4 4 Cl 1.73604 * 120.01894 * 359.97438 * 3 2 1 5 5 C 1.38450 * 119.96593 * 179.97438 * 3 2 1 6 6 Cl 1.73591 * 120.01933 * 180.02562 * 5 3 2 7 7 C 1.38342 * 119.95877 * 359.97438 * 5 3 2 8 8 C 1.38216 * 119.99890 * 359.74721 * 7 5 3 9 9 C 1.38209 * 119.99499 * 179.97438 * 2 1 3 10 10 C 1.50692 * 119.98531 * 359.97438 * 9 2 1 11 11 H 1.09001 * 109.47238 * 39.99926 * 10 9 2 12 12 N 1.46897 * 109.47661 * 160.00018 * 10 9 2 13 13 C 1.50701 * 109.47316 * 280.00506 * 10 9 2 14 14 H 1.08001 * 119.99863 * 335.47317 * 13 10 9 15 15 C 1.37875 * 120.00178 * 155.47760 * 13 10 9 16 16 N 1.31515 * 120.00165 * 7.07998 * 15 13 10 17 17 Si 1.86800 * 120.00095 * 187.08075 * 15 13 10 18 18 H 1.48495 * 109.47323 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.47195 * 300.00075 * 17 15 13 20 20 H 1.48502 * 109.47068 * 59.99679 * 17 15 13 21 21 H 1.09002 * 109.47273 * 270.02921 * 1 2 3 22 22 H 1.09000 * 109.47197 * 30.01992 * 1 2 3 23 23 H 1.09004 * 109.47667 * 150.02075 * 1 2 3 24 24 H 1.07992 * 120.00280 * 180.02562 * 7 5 3 25 25 H 1.08002 * 119.97933 * 180.27639 * 8 7 5 26 26 H 1.00905 * 110.99840 * 66.85322 * 12 10 9 27 27 H 1.00899 * 111.00679 * 190.80790 * 12 10 9 28 28 H 0.97001 * 119.99845 * 355.34601 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.1980 0.0000 4 17 1.3314 2.7018 -0.0007 5 6 3.5833 1.1971 0.0005 6 17 4.4527 2.6995 0.0012 7 6 4.2733 -0.0020 0.0016 8 6 3.5805 -1.1980 0.0074 9 6 2.1979 -1.1970 0.0005 10 6 1.4440 -2.5018 0.0017 11 1 0.5803 -2.4230 -0.6586 12 7 2.3256 -3.5772 -0.4716 13 6 0.9795 -2.8123 1.4013 14 1 1.5029 -2.3954 2.2490 15 6 -0.1137 -3.6288 1.5996 16 7 -0.6659 -4.2479 0.5791 17 14 -0.8106 -3.8556 3.3179 18 1 -1.9758 -4.7744 3.2621 19 1 0.2331 -4.4321 4.2032 20 1 -1.2432 -2.5402 3.8542 21 1 -0.3634 0.0005 1.0277 22 1 -0.3633 0.8898 -0.5141 23 1 -0.3634 -0.8902 -0.5135 24 1 5.3532 -0.0035 0.0024 25 1 4.1196 -2.1339 0.0128 26 1 3.0745 -3.7454 0.1834 27 1 1.8029 -4.4221 -0.6479 28 1 -0.3474 -4.0780 -0.3213 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238462017.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:39 Heat of formation + Delta-G solvation = -6.489806 kcal Electronic energy + Delta-G solvation = -15069.193164 eV Core-core repulsion = 12363.897200 eV Total energy + Delta-G solvation = -2705.295964 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.37278 -36.52191 -36.24128 -34.87427 -32.31667 -31.68844 -29.35662 -26.61749 -25.69352 -23.22179 -21.37960 -20.23884 -17.24341 -16.62345 -15.92698 -15.03359 -14.73930 -14.00699 -13.89408 -13.14554 -12.95429 -12.83025 -12.51133 -12.32721 -11.83572 -11.65732 -11.49154 -11.19555 -10.90250 -10.77429 -10.59392 -10.49184 -10.26791 -9.82577 -9.55440 -8.81245 -8.30402 -8.09963 -7.46456 -6.57785 -4.38726 1.47695 1.58033 2.16024 2.54340 3.30364 3.33172 3.51013 3.96093 4.35327 5.00737 5.09480 5.32717 5.57490 5.57638 5.76340 5.90377 6.05776 6.19844 6.30374 6.44677 6.63663 6.72774 6.75405 7.11359 7.30675 7.72496 8.09824 8.29906 8.50526 8.59398 9.33077 10.74497 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.027486 B = 0.006719 C = 0.006056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.473542 B = 4166.415016 C = 4622.308253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.062 4.062 3 C -0.033 4.033 4 Cl -0.067 7.067 5 C -0.050 4.050 6 Cl -0.074 7.074 7 C -0.112 4.112 8 C -0.096 4.096 9 C -0.009 4.009 10 C 0.222 3.778 11 H 0.060 0.940 12 N -0.855 5.855 13 C -0.621 4.621 14 H 0.051 0.949 15 C 0.032 3.968 16 N -0.901 5.901 17 Si 1.065 2.935 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.285 1.285 21 H 0.079 0.921 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.131 0.869 25 H 0.137 0.863 26 H 0.324 0.676 27 H 0.335 0.665 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.939 8.786 -1.134 10.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.063 4.063 3 C -0.060 4.060 4 Cl -0.038 7.038 5 C -0.077 4.077 6 Cl -0.046 7.046 7 C -0.131 4.131 8 C -0.115 4.115 9 C -0.011 4.011 10 C 0.113 3.887 11 H 0.078 0.922 12 N -0.383 5.383 13 C -0.661 4.661 14 H 0.069 0.931 15 C -0.175 4.175 16 N -0.536 5.536 17 Si 0.893 3.107 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.212 1.212 21 H 0.097 0.903 22 H 0.078 0.922 23 H 0.096 0.904 24 H 0.149 0.851 25 H 0.154 0.846 26 H 0.134 0.866 27 H 0.146 0.854 28 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.919 8.728 -0.918 10.061 hybrid contribution 0.974 0.685 0.131 1.198 sum 5.893 9.413 -0.787 11.133 Atomic orbital electron populations 1.20777 0.89814 1.02502 1.03327 1.19541 0.97169 0.89961 0.99655 1.20531 0.90028 0.87358 1.08098 1.98324 1.76765 1.31762 1.96943 1.20511 0.90071 0.87552 1.09580 1.98330 1.76385 1.32678 1.97182 1.20912 0.99933 0.90271 1.01944 1.21062 0.94177 0.97263 0.98951 1.20292 0.93335 0.95544 0.91894 1.18224 0.90373 0.84517 0.95589 0.92200 1.59561 1.15854 1.11807 1.51077 1.22410 1.16873 1.34904 0.91906 0.93099 1.25858 0.93732 0.92362 1.05502 1.70876 1.44576 1.38033 1.00157 0.83581 0.76537 0.76644 0.73974 1.20657 1.21378 1.21155 0.90251 0.92167 0.90384 0.85078 0.84556 0.86560 0.85362 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.00 9.01 36.00 0.32 -1.68 15 2 C -0.06 -1.19 5.87 -104.60 -0.61 -1.81 15 3 C -0.03 -0.58 6.32 -39.47 -0.25 -0.83 15 4 Cl -0.07 -1.06 26.30 -51.86 -1.36 -2.43 15 5 C -0.05 -0.83 6.32 -39.47 -0.25 -1.08 15 6 Cl -0.07 -1.09 27.96 -51.86 -1.45 -2.54 15 7 C -0.11 -1.80 9.83 -39.55 -0.39 -2.19 15 8 C -0.10 -1.72 9.27 -39.58 -0.37 -2.09 15 9 C -0.01 -0.19 5.06 -104.63 -0.53 -0.72 15 10 C 0.22 4.96 2.01 -70.02 -0.14 4.82 15 11 H 0.06 1.46 5.30 -51.93 -0.28 1.18 15 12 N -0.86 -17.61 8.52 -6.65 -0.06 -17.66 15 13 C -0.62 -15.44 8.28 -34.44 -0.29 -15.73 15 14 H 0.05 1.32 7.81 -52.49 -0.41 0.91 15 15 C 0.03 0.82 5.45 -17.82 -0.10 0.72 15 16 N -0.90 -24.28 13.63 55.43 0.76 -23.53 15 17 Si 1.06 23.37 29.91 -169.99 -5.08 18.29 15 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 19 H -0.29 -6.12 7.11 56.52 0.40 -5.72 15 20 H -0.29 -6.08 7.11 56.52 0.40 -5.68 15 21 H 0.08 1.52 8.14 -51.93 -0.42 1.09 15 22 H 0.06 0.98 6.90 -51.93 -0.36 0.62 15 23 H 0.08 1.55 6.12 -51.93 -0.32 1.23 15 24 H 0.13 1.75 8.06 -52.49 -0.42 1.33 15 25 H 0.14 2.29 6.43 -52.49 -0.34 1.95 15 26 H 0.32 6.33 7.62 -39.29 -0.30 6.03 15 27 H 0.33 7.16 8.44 -39.29 -0.33 6.83 15 28 H 0.27 7.19 6.22 -40.82 -0.25 6.94 15 LS Contribution 266.13 15.07 4.01 4.01 Total: -1.00 -25.56 266.13 -8.01 -33.58 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -2.23 Total: 10.87 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -2.60 Total: -20.58 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.70 Total: -41.19 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.08 Total: 18.29 kcal Atomic # 17 Polarization: -2.15 SS G_CDS: -2.81 Total: -4.97 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -25.56 -8.01 -33.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238462017.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.086 kcal (2) G-P(sol) polarization free energy of solvation -25.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds