Wall clock time and date at job start Mon Mar 30 2020 08:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38340 * 120.00477 * 2 1 4 4 Cl 1.73604 * 120.01894 * 359.97438 * 3 2 1 5 5 C 1.38450 * 119.96593 * 179.97438 * 3 2 1 6 6 Cl 1.73591 * 120.01933 * 180.02562 * 5 3 2 7 7 C 1.38342 * 119.95877 * 359.97438 * 5 3 2 8 8 C 1.38216 * 119.99890 * 359.74721 * 7 5 3 9 9 C 1.38209 * 119.99499 * 179.97438 * 2 1 3 10 10 C 1.50692 * 119.98531 * 359.97438 * 9 2 1 11 11 H 1.09001 * 109.47238 * 39.99926 * 10 9 2 12 12 N 1.46897 * 109.47661 * 160.00018 * 10 9 2 13 13 C 1.50701 * 109.47316 * 280.00506 * 10 9 2 14 14 H 1.08001 * 119.99863 * 335.47317 * 13 10 9 15 15 C 1.37875 * 120.00178 * 155.47760 * 13 10 9 16 16 N 1.31515 * 120.00165 * 7.07998 * 15 13 10 17 17 Si 1.86800 * 120.00095 * 187.08075 * 15 13 10 18 18 H 1.48495 * 109.47323 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.47195 * 300.00075 * 17 15 13 20 20 H 1.48502 * 109.47068 * 59.99679 * 17 15 13 21 21 H 1.09002 * 109.47273 * 270.02921 * 1 2 3 22 22 H 1.09000 * 109.47197 * 30.01992 * 1 2 3 23 23 H 1.09004 * 109.47667 * 150.02075 * 1 2 3 24 24 H 1.07992 * 120.00280 * 180.02562 * 7 5 3 25 25 H 1.08002 * 119.97933 * 180.27639 * 8 7 5 26 26 H 1.00905 * 110.99840 * 66.85322 * 12 10 9 27 27 H 1.00899 * 111.00679 * 190.80790 * 12 10 9 28 28 H 0.97001 * 119.99845 * 355.34601 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.1980 0.0000 4 17 1.3314 2.7018 -0.0007 5 6 3.5833 1.1971 0.0005 6 17 4.4527 2.6995 0.0012 7 6 4.2733 -0.0020 0.0016 8 6 3.5805 -1.1980 0.0074 9 6 2.1979 -1.1970 0.0005 10 6 1.4440 -2.5018 0.0017 11 1 0.5803 -2.4230 -0.6586 12 7 2.3256 -3.5772 -0.4716 13 6 0.9795 -2.8123 1.4013 14 1 1.5029 -2.3954 2.2490 15 6 -0.1137 -3.6288 1.5996 16 7 -0.6659 -4.2479 0.5791 17 14 -0.8106 -3.8556 3.3179 18 1 -1.9758 -4.7744 3.2621 19 1 0.2331 -4.4321 4.2032 20 1 -1.2432 -2.5402 3.8542 21 1 -0.3634 0.0005 1.0277 22 1 -0.3633 0.8898 -0.5141 23 1 -0.3634 -0.8902 -0.5135 24 1 5.3532 -0.0035 0.0024 25 1 4.1196 -2.1339 0.0128 26 1 3.0745 -3.7454 0.1834 27 1 1.8029 -4.4221 -0.6479 28 1 -0.3474 -4.0780 -0.3213 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238462017.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:38 Heat of formation + Delta-G solvation = -20.369346 kcal Electronic energy + Delta-G solvation = -15069.795026 eV Core-core repulsion = 12363.897200 eV Total energy + Delta-G solvation = -2705.897826 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.80544 -37.90146 -37.53780 -36.52731 -33.75704 -33.49853 -30.84887 -28.10739 -27.48234 -24.92176 -22.81900 -21.79940 -19.08646 -18.10983 -17.37219 -16.55724 -16.20537 -15.68575 -15.45883 -14.70923 -14.50836 -14.36049 -14.16766 -13.80731 -13.35275 -13.27162 -12.78686 -12.70553 -12.50343 -12.17592 -12.01065 -11.92112 -11.81620 -11.48759 -11.36973 -10.72778 -9.69438 -9.58867 -9.24075 -8.55142 -6.39944 0.06815 0.18351 0.84619 1.20461 1.53576 1.57590 1.77450 2.46463 2.60739 3.14012 3.66327 3.83220 4.10268 4.21026 4.36047 4.36471 4.56573 4.72407 4.80356 4.96586 5.03092 5.19366 5.30099 5.64635 5.76477 5.85354 6.09228 6.54130 6.54849 6.82685 7.37377 8.73252 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.027486 B = 0.006719 C = 0.006056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.473542 B = 4166.415016 C = 4622.308253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.077 4.077 3 C -0.040 4.040 4 Cl -0.051 7.051 5 C -0.050 4.050 6 Cl -0.051 7.051 7 C -0.101 4.101 8 C -0.098 4.098 9 C -0.038 4.038 10 C 0.228 3.772 11 H 0.034 0.966 12 N -0.843 5.843 13 C -0.619 4.619 14 H 0.038 0.962 15 C -0.009 4.009 16 N -0.926 5.926 17 Si 1.103 2.897 18 H -0.286 1.286 19 H -0.275 1.275 20 H -0.276 1.276 21 H 0.069 0.931 22 H 0.079 0.921 23 H 0.056 0.944 24 H 0.165 0.835 25 H 0.146 0.854 26 H 0.331 0.669 27 H 0.329 0.671 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.371 10.035 -0.642 12.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.079 4.079 3 C -0.067 4.067 4 Cl -0.022 7.022 5 C -0.077 4.077 6 Cl -0.022 7.022 7 C -0.119 4.119 8 C -0.116 4.116 9 C -0.039 4.039 10 C 0.118 3.882 11 H 0.052 0.948 12 N -0.370 5.370 13 C -0.658 4.658 14 H 0.056 0.944 15 C -0.210 4.210 16 N -0.563 5.563 17 Si 0.926 3.074 18 H -0.212 1.212 19 H -0.201 1.201 20 H -0.201 1.201 21 H 0.087 0.913 22 H 0.098 0.902 23 H 0.075 0.925 24 H 0.183 0.817 25 H 0.164 0.836 26 H 0.142 0.858 27 H 0.140 0.860 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.375 9.993 -0.428 11.861 hybrid contribution 0.615 0.419 -0.058 0.747 sum 6.991 10.412 -0.485 12.551 Atomic orbital electron populations 1.20675 0.90022 1.02384 1.02592 1.19596 0.97285 0.90512 1.00502 1.20588 0.90722 0.87521 1.07871 1.98326 1.76583 1.30474 1.96849 1.20701 0.89953 0.88852 1.08236 1.98342 1.75696 1.31204 1.96990 1.21216 1.01480 0.89170 1.00046 1.21191 0.93252 0.98610 0.98566 1.20199 0.94484 0.94730 0.94486 1.17997 0.90258 0.86208 0.93702 0.94848 1.59504 1.15449 1.11144 1.50916 1.22565 1.16431 1.34030 0.92810 0.94387 1.26891 0.94239 0.92298 1.07590 1.70962 1.45548 1.39544 1.00200 0.83076 0.76129 0.76909 0.71244 1.21194 1.20060 1.20138 0.91270 0.90227 0.92489 0.81742 0.83638 0.85751 0.86028 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.77 9.01 71.23 0.64 -3.13 15 2 C -0.08 -2.96 5.87 -19.85 -0.12 -3.08 15 3 C -0.04 -1.34 6.32 22.34 0.14 -1.20 15 4 Cl -0.05 -1.53 26.30 -2.72 -0.07 -1.60 15 5 C -0.05 -1.54 6.32 22.35 0.14 -1.40 15 6 Cl -0.05 -1.34 27.96 -2.72 -0.08 -1.42 15 7 C -0.10 -2.94 9.83 22.29 0.22 -2.72 15 8 C -0.10 -3.34 9.27 22.27 0.21 -3.14 15 9 C -0.04 -1.52 5.06 -19.87 -0.10 -1.62 15 10 C 0.23 10.35 2.01 43.42 0.09 10.44 15 11 H 0.03 1.70 5.30 -2.39 -0.01 1.69 15 12 N -0.84 -34.82 8.52 -174.97 -1.49 -36.31 15 13 C -0.62 -31.07 8.28 25.60 0.21 -30.85 15 14 H 0.04 1.97 7.81 -2.91 -0.02 1.95 15 15 C -0.01 -0.45 5.45 84.65 0.46 0.01 15 16 N -0.93 -50.89 13.63 21.45 0.29 -50.59 15 17 Si 1.10 47.10 29.91 68.60 2.05 49.15 15 18 H -0.29 -12.40 7.11 99.48 0.71 -11.70 15 19 H -0.28 -11.12 7.11 99.48 0.71 -10.41 15 20 H -0.28 -11.25 7.11 99.48 0.71 -10.54 15 21 H 0.07 2.69 8.14 -2.39 -0.02 2.67 15 22 H 0.08 2.58 6.90 -2.39 -0.02 2.56 15 23 H 0.06 2.36 6.12 -2.38 -0.01 2.34 15 24 H 0.17 3.68 8.06 -2.91 -0.02 3.66 15 25 H 0.15 4.61 6.43 -2.91 -0.02 4.60 15 26 H 0.33 12.78 7.62 -89.69 -0.68 12.10 15 27 H 0.33 14.29 8.44 -89.69 -0.76 13.53 15 28 H 0.26 14.42 6.22 -92.71 -0.58 13.84 15 Total: -1.00 -53.74 266.13 2.57 -51.17 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: -0.02 Total: 26.29 kcal Atomic # 6 Polarization: -38.58 SS G_CDS: 1.89 Total: -36.68 kcal Atomic # 7 Polarization: -85.70 SS G_CDS: -1.20 Total: -86.90 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.05 Total: 49.15 kcal Atomic # 17 Polarization: -2.87 SS G_CDS: -0.15 Total: -3.02 kcal Total: -53.74 2.57 -51.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238462017.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.798 kcal (2) G-P(sol) polarization free energy of solvation -53.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds