Wall clock time and date at job start Mon Mar 30 2020 08:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38346 * 120.00111 * 2 1 4 4 Cl 1.73596 * 120.01961 * 359.97438 * 3 2 1 5 5 C 1.38442 * 119.95978 * 180.27932 * 3 2 1 6 6 Cl 1.73599 * 120.01949 * 179.70228 * 5 3 2 7 7 C 1.38353 * 119.96407 * 359.72431 * 5 3 2 8 8 C 1.38203 * 119.99890 * 359.97438 * 7 5 3 9 9 C 1.38204 * 119.99900 * 179.75010 * 2 1 3 10 10 C 1.50700 * 119.98245 * 0.02562 * 9 2 1 11 11 H 1.09004 * 109.47210 * 324.72841 * 10 9 2 12 12 N 1.46899 * 109.47483 * 204.72510 * 10 9 2 13 13 C 1.50702 * 109.46869 * 84.72548 * 10 9 2 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 10 9 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 10 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 10 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 H 1.09001 * 109.47245 * 270.25409 * 1 2 3 22 22 H 1.09005 * 109.47415 * 30.25357 * 1 2 3 23 23 H 1.09011 * 109.47447 * 150.25671 * 1 2 3 24 24 H 1.07993 * 120.00168 * 179.97438 * 7 5 3 25 25 H 1.07998 * 119.98294 * 180.02562 * 8 7 5 26 26 H 1.00903 * 111.00048 * 300.00270 * 12 10 9 27 27 H 1.00904 * 110.99882 * 63.95460 * 12 10 9 28 28 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1987 1.1981 0.0000 4 17 1.3312 2.7018 -0.0007 5 6 3.5831 1.1971 -0.0058 6 17 4.4526 2.6996 -0.0137 7 6 4.2732 -0.0020 -0.0059 8 6 3.5806 -1.1979 0.0004 9 6 2.1979 -1.1969 0.0052 10 6 1.4440 -2.5017 0.0103 11 1 0.5355 -2.3941 0.6030 12 7 2.2880 -3.5527 0.5943 13 6 1.0802 -2.8771 -1.4031 14 1 1.3666 -2.2353 -2.2231 15 6 0.3870 -4.0432 -1.6500 16 7 0.0385 -4.8250 -0.6515 17 14 -0.0572 -4.5124 -3.4027 18 1 1.0351 -5.3305 -3.9881 19 1 -1.3174 -5.2980 -3.4005 20 1 -0.2425 -3.2817 -4.2128 21 1 -0.3634 0.0046 1.0277 22 1 -0.3634 0.8877 -0.5178 23 1 -0.3634 -0.8923 -0.5099 24 1 5.3532 -0.0035 -0.0109 25 1 4.1196 -2.1338 0.0007 26 1 3.1371 -3.6718 0.0624 27 1 2.4925 -3.3559 1.5626 28 1 -0.4494 -5.6452 -0.8252 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238462405.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:41 Heat of formation + Delta-G solvation = 3.629269 kcal Electronic energy + Delta-G solvation = -15002.792640 eV Core-core repulsion = 12297.935472 eV Total energy + Delta-G solvation = -2704.857168 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.42408 -36.52662 -36.27790 -34.46157 -32.35513 -31.72857 -29.16850 -26.58691 -26.13761 -23.20032 -21.33281 -20.05926 -16.62135 -16.58361 -15.82042 -15.11850 -14.45624 -14.28525 -13.97555 -13.54317 -13.05484 -12.59470 -12.44458 -12.01291 -11.89119 -11.54919 -11.31695 -11.16146 -10.90994 -10.78700 -10.65427 -10.55083 -10.49686 -9.85924 -9.35494 -8.53691 -8.36580 -7.99241 -7.25072 -5.98106 -4.14342 1.40690 1.52413 2.12093 2.50589 3.28502 3.36094 3.39034 3.88928 4.42032 4.96235 5.25451 5.32371 5.51740 5.58214 5.73196 5.94787 6.12532 6.16585 6.22871 6.35334 6.62677 6.72699 6.91928 7.13068 7.33948 7.80145 8.03749 8.49314 8.86156 9.01811 9.55259 11.05682 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.028763 B = 0.006355 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.241165 B = 4404.846678 C = 4743.966371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.059 4.059 3 C -0.032 4.032 4 Cl -0.067 7.067 5 C -0.051 4.051 6 Cl -0.074 7.074 7 C -0.107 4.107 8 C -0.114 4.114 9 C -0.056 4.056 10 C 0.254 3.746 11 H 0.057 0.943 12 N -0.810 5.810 13 C -0.532 4.532 14 H 0.054 0.946 15 C 0.087 3.913 16 N -0.843 5.843 17 Si 0.885 3.115 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.101 0.899 24 H 0.131 0.869 25 H 0.132 0.868 26 H 0.319 0.681 27 H 0.300 0.700 28 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.247 10.364 2.530 11.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.061 4.061 3 C -0.059 4.059 4 Cl -0.038 7.038 5 C -0.078 4.078 6 Cl -0.045 7.045 7 C -0.126 4.126 8 C -0.133 4.133 9 C -0.060 4.060 10 C 0.145 3.855 11 H 0.075 0.925 12 N -0.337 5.337 13 C -0.571 4.571 14 H 0.073 0.927 15 C -0.121 4.121 16 N -0.477 5.477 17 Si 0.712 3.288 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.120 0.880 24 H 0.149 0.851 25 H 0.150 0.850 26 H 0.132 0.868 27 H 0.111 0.889 28 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.523 9.940 2.439 11.189 hybrid contribution 0.670 0.802 -0.894 1.375 sum 5.193 10.741 1.546 12.031 Atomic orbital electron populations 1.20944 0.89774 1.04644 1.02458 1.19667 0.97316 0.89860 0.99252 1.20685 0.90100 0.87533 1.07605 1.98327 1.76726 1.31828 1.96899 1.20523 0.90139 0.87591 1.09575 1.98334 1.76375 1.32610 1.97171 1.20876 0.99914 0.90258 1.01511 1.21081 0.94346 0.97352 1.00472 1.21899 0.94038 0.98463 0.91553 1.18320 0.90974 0.79557 0.96693 0.92501 1.59169 1.21661 1.49780 1.03068 1.20732 1.38402 1.07538 0.90432 0.92736 1.24925 0.94830 0.96034 0.96314 1.70095 1.35798 1.11752 1.30081 0.86742 0.77917 0.78641 0.85506 1.20675 1.21215 1.19903 0.91368 0.91802 0.88050 0.85078 0.85026 0.86803 0.88917 0.93269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.12 8.82 36.00 0.32 -1.80 15 2 C -0.06 -1.09 5.88 -104.60 -0.62 -1.71 15 3 C -0.03 -0.54 6.32 -39.47 -0.25 -0.79 15 4 Cl -0.07 -1.02 26.31 -51.86 -1.36 -2.38 15 5 C -0.05 -0.82 6.32 -39.46 -0.25 -1.07 15 6 Cl -0.07 -1.05 27.96 -51.86 -1.45 -2.50 15 7 C -0.11 -1.65 9.83 -39.55 -0.39 -2.04 15 8 C -0.11 -1.94 9.27 -39.58 -0.37 -2.31 15 9 C -0.06 -1.09 4.98 -104.62 -0.52 -1.62 15 10 C 0.25 5.71 2.17 -70.02 -0.15 5.56 15 11 H 0.06 1.40 7.00 -51.93 -0.36 1.03 15 12 N -0.81 -17.36 8.12 -6.65 -0.05 -17.42 15 13 C -0.53 -13.49 7.92 -34.44 -0.27 -13.76 15 14 H 0.05 1.42 7.74 -52.49 -0.41 1.01 15 15 C 0.09 2.27 5.39 -17.82 -0.10 2.17 15 16 N -0.84 -23.12 12.76 55.43 0.71 -22.41 15 17 Si 0.88 20.40 29.54 -169.99 -5.02 15.38 15 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 19 H -0.29 -6.60 7.11 56.52 0.40 -6.19 15 20 H -0.27 -6.30 7.11 56.52 0.40 -5.89 15 21 H 0.07 1.09 8.14 -51.93 -0.42 0.66 15 22 H 0.06 1.01 6.91 -51.93 -0.36 0.65 15 23 H 0.10 1.99 6.14 -51.92 -0.32 1.67 15 24 H 0.13 1.68 8.06 -52.49 -0.42 1.26 15 25 H 0.13 2.07 6.29 -52.49 -0.33 1.74 15 26 H 0.32 6.45 7.20 -39.29 -0.28 6.16 15 27 H 0.30 5.71 9.06 -39.29 -0.36 5.36 15 28 H 0.26 6.81 8.31 -40.82 -0.34 6.47 15 LS Contribution 267.77 15.07 4.04 4.04 Total: -1.00 -26.70 267.77 -8.14 -34.84 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -2.40 Total: 7.83 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -2.59 Total: -17.36 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.65 Total: -39.83 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -2.81 Total: -4.88 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -26.70 -8.14 -34.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238462405.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.465 kcal (2) G-P(sol) polarization free energy of solvation -26.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds