Wall clock time and date at job start Mon Mar 30 2020 08:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38346 * 120.00111 * 2 1 4 4 Cl 1.73596 * 120.01961 * 359.97438 * 3 2 1 5 5 C 1.38442 * 119.95978 * 180.27932 * 3 2 1 6 6 Cl 1.73599 * 120.01949 * 179.70228 * 5 3 2 7 7 C 1.38353 * 119.96407 * 359.72431 * 5 3 2 8 8 C 1.38203 * 119.99890 * 359.97438 * 7 5 3 9 9 C 1.38204 * 119.99900 * 179.75010 * 2 1 3 10 10 C 1.50700 * 119.98245 * 0.02562 * 9 2 1 11 11 H 1.09004 * 109.47210 * 324.72841 * 10 9 2 12 12 N 1.46899 * 109.47483 * 204.72510 * 10 9 2 13 13 C 1.50702 * 109.46869 * 84.72548 * 10 9 2 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 10 9 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 10 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 10 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 H 1.09001 * 109.47245 * 270.25409 * 1 2 3 22 22 H 1.09005 * 109.47415 * 30.25357 * 1 2 3 23 23 H 1.09011 * 109.47447 * 150.25671 * 1 2 3 24 24 H 1.07993 * 120.00168 * 179.97438 * 7 5 3 25 25 H 1.07998 * 119.98294 * 180.02562 * 8 7 5 26 26 H 1.00903 * 111.00048 * 300.00270 * 12 10 9 27 27 H 1.00904 * 110.99882 * 63.95460 * 12 10 9 28 28 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1987 1.1981 0.0000 4 17 1.3312 2.7018 -0.0007 5 6 3.5831 1.1971 -0.0058 6 17 4.4526 2.6996 -0.0137 7 6 4.2732 -0.0020 -0.0059 8 6 3.5806 -1.1979 0.0004 9 6 2.1979 -1.1969 0.0052 10 6 1.4440 -2.5017 0.0103 11 1 0.5355 -2.3941 0.6030 12 7 2.2880 -3.5527 0.5943 13 6 1.0802 -2.8771 -1.4031 14 1 1.3666 -2.2353 -2.2231 15 6 0.3870 -4.0432 -1.6500 16 7 0.0385 -4.8250 -0.6515 17 14 -0.0572 -4.5124 -3.4027 18 1 1.0351 -5.3305 -3.9881 19 1 -1.3174 -5.2980 -3.4005 20 1 -0.2425 -3.2817 -4.2128 21 1 -0.3634 0.0046 1.0277 22 1 -0.3634 0.8877 -0.5178 23 1 -0.3634 -0.8923 -0.5099 24 1 5.3532 -0.0035 -0.0109 25 1 4.1196 -2.1338 0.0007 26 1 3.1371 -3.6718 0.0624 27 1 2.4925 -3.3559 1.5626 28 1 -0.4494 -5.6452 -0.8252 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238462405.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:41 Heat of formation + Delta-G solvation = -11.408370 kcal Electronic energy + Delta-G solvation = -15003.444721 eV Core-core repulsion = 12297.935472 eV Total energy + Delta-G solvation = -2705.509249 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.79657 -37.82877 -37.52372 -36.09230 -33.73901 -33.58621 -30.61609 -28.13587 -27.82706 -24.82848 -22.71096 -21.59379 -18.50617 -17.93531 -17.22470 -16.71896 -16.09055 -15.96320 -15.32513 -15.03782 -14.39674 -14.26835 -13.78150 -13.61944 -13.41334 -12.94865 -12.80514 -12.74622 -12.48609 -12.41612 -12.16113 -11.87700 -11.80137 -11.58333 -11.18615 -10.53292 -9.67516 -9.43077 -8.91192 -7.96527 -6.16938 0.05878 0.19321 0.86079 1.22257 1.44392 1.47725 1.55188 2.43291 2.59631 3.27730 3.69470 3.96326 4.19504 4.21700 4.36666 4.48917 4.62380 4.78742 4.85386 5.01749 5.20504 5.24751 5.43085 5.69436 5.73463 5.78399 6.18240 6.67253 7.12520 7.28077 7.55216 9.06214 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.028763 B = 0.006355 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.241165 B = 4404.846678 C = 4743.966371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.073 4.073 3 C -0.040 4.040 4 Cl -0.052 7.052 5 C -0.052 4.052 6 Cl -0.053 7.053 7 C -0.098 4.098 8 C -0.112 4.112 9 C -0.079 4.079 10 C 0.263 3.737 11 H 0.027 0.973 12 N -0.822 5.822 13 C -0.534 4.534 14 H 0.043 0.957 15 C 0.043 3.957 16 N -0.875 5.875 17 Si 0.939 3.061 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.273 1.273 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.163 0.837 25 H 0.143 0.857 26 H 0.326 0.674 27 H 0.314 0.686 28 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.574 11.563 2.233 13.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.074 4.074 3 C -0.067 4.067 4 Cl -0.023 7.023 5 C -0.079 4.079 6 Cl -0.024 7.024 7 C -0.116 4.116 8 C -0.131 4.131 9 C -0.082 4.082 10 C 0.153 3.847 11 H 0.045 0.955 12 N -0.350 5.350 13 C -0.573 4.573 14 H 0.061 0.939 15 C -0.161 4.161 16 N -0.510 5.510 17 Si 0.766 3.234 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.198 1.198 21 H 0.096 0.904 22 H 0.095 0.905 23 H 0.091 0.909 24 H 0.181 0.819 25 H 0.161 0.839 26 H 0.140 0.860 27 H 0.126 0.874 28 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.857 11.154 2.138 12.778 hybrid contribution 0.313 0.563 -0.770 1.003 sum 6.170 11.716 1.368 13.312 Atomic orbital electron populations 1.20851 0.89756 1.03717 1.02858 1.19727 0.97590 0.90299 0.99828 1.20722 0.90730 0.87712 1.07555 1.98329 1.76553 1.30631 1.96819 1.20721 0.90064 0.88801 1.08326 1.98345 1.75756 1.31308 1.96994 1.21168 1.01397 0.89211 0.99837 1.21206 0.93397 0.98663 0.99827 1.21581 0.95047 0.97300 0.94302 1.17899 0.90650 0.81474 0.94682 0.95477 1.58968 1.21986 1.49959 1.04073 1.20958 1.37652 1.06979 0.91720 0.93855 1.25537 0.95073 0.96282 0.99244 1.70201 1.37055 1.12162 1.31618 0.85879 0.77516 0.78147 0.81877 1.20506 1.21166 1.19787 0.90422 0.90528 0.90923 0.81905 0.83917 0.86048 0.87397 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.04 8.82 71.23 0.63 -3.41 15 2 C -0.07 -2.64 5.88 -19.85 -0.12 -2.76 15 3 C -0.04 -1.29 6.32 22.34 0.14 -1.15 15 4 Cl -0.05 -1.50 26.31 -2.72 -0.07 -1.57 15 5 C -0.05 -1.53 6.32 22.35 0.14 -1.39 15 6 Cl -0.05 -1.35 27.96 -2.72 -0.08 -1.43 15 7 C -0.10 -2.73 9.83 22.29 0.22 -2.51 15 8 C -0.11 -3.63 9.27 22.27 0.21 -3.43 15 9 C -0.08 -3.04 4.98 -19.86 -0.10 -3.14 15 10 C 0.26 11.98 2.17 43.42 0.09 12.07 15 11 H 0.03 1.39 7.00 -2.38 -0.02 1.37 15 12 N -0.82 -35.24 8.12 -174.95 -1.42 -36.66 15 13 C -0.53 -27.41 7.92 25.60 0.20 -27.21 15 14 H 0.04 2.27 7.74 -2.91 -0.02 2.25 15 15 C 0.04 2.27 5.39 84.66 0.46 2.72 15 16 N -0.87 -48.69 12.76 21.45 0.27 -48.42 15 17 Si 0.94 42.20 29.54 68.60 2.03 44.23 15 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 15 19 H -0.29 -12.73 7.11 99.48 0.71 -12.02 15 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 15 21 H 0.08 2.49 8.14 -2.39 -0.02 2.47 15 22 H 0.08 2.40 6.91 -2.38 -0.02 2.38 15 23 H 0.07 2.95 6.14 -2.38 -0.01 2.94 15 24 H 0.16 3.50 8.06 -2.91 -0.02 3.47 15 25 H 0.14 4.22 6.29 -2.91 -0.02 4.20 15 26 H 0.33 13.01 7.20 -89.69 -0.65 12.36 15 27 H 0.31 11.89 9.06 -89.69 -0.81 11.08 15 28 H 0.26 13.71 8.31 -92.70 -0.77 12.94 15 Total: -1.00 -56.02 267.77 2.36 -53.66 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -0.24 Total: 20.40 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: 1.87 Total: -30.20 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -1.15 Total: -85.08 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 17 Polarization: -2.85 SS G_CDS: -0.15 Total: -3.00 kcal Total: -56.02 2.36 -53.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238462405.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.247 kcal (2) G-P(sol) polarization free energy of solvation -56.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds